data_2LT0 # _entry.id 2LT0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2LT0 RCSB RCSB102796 BMRB 18454 WWPDB D_1000102796 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 18454 BMRB unspecified . 2LSZ PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LT0 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-05-09 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zaliznyak, T.' 1 'de los Santos, C.' 2 'Lukin, M.' 3 'El-khateeb, M.' 4 'Bonala, R.' 5 'Johnson, F.' 6 # _citation.id primary _citation.title 'NMR structure of duplex DNA containing the alpha-OH-PdG.dA base pair: a mutagenic intermediate of acrolein.' _citation.journal_abbrev Biopolymers _citation.journal_volume 93 _citation.page_first 391 _citation.page_last 401 _citation.year 2010 _citation.journal_id_ASTM BIPMAA _citation.country US _citation.journal_id_ISSN 0006-3525 _citation.journal_id_CSD 0161 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20049919 _citation.pdbx_database_id_DOI 10.1002/bip.21366 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Zaliznyak, T.' 1 primary 'Lukin, M.' 2 primary 'El-khateeb, M.' 3 primary 'Bonala, R.' 4 primary 'Johnson, F.' 5 primary 'de los Santos, C.' 6 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*TP*AP*CP*(63G)P*CP*AP*TP*GP*C)-3') ; 3390.249 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*AP*TP*GP*AP*GP*TP*AP*CP*G)-3') ; 3398.235 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DT)(DA)(DC)(63G)(DC)(DA)(DT)(DG)(DC)' CGTACXCATGC B ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DT)(DG)(DA)(DG)(DT)(DA)(DC)(DG)' GCATGAGTACG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 63G n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DC n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DA n 2 7 DG n 2 8 DT n 2 9 DA n 2 10 DC n 2 11 DG n # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2LT0 2LT0 1 ? ? ? 2 PDB 2LT0 2LT0 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2LT0 B 1 ? 11 ? 2LT0 1 ? 11 ? 1 11 2 2 2LT0 D 1 ? 11 ? 2LT0 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 63G 'DNA linking' n '(6S)-3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-hydroxy-5,6,7,8-tetrahydropyrimido[1,2-a]purin-10(3H)-one' ? 'C13 H18 N5 O8 P' 403.284 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H COSY' 1 3 1 '2D 1H-1H TOCSY' 1 4 1 '2D 1H-1H COSY45' 1 5 1 '2D DQF-COSY' 2 6 2 '2D 1H-1H NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 ? 6.6 ambient ? 298 K 2 ? 6.6 ambient ? 278 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.5 mM 11 mer duplex oligo, 100% D2O' 1 '100% D2O' '0.5 mM 11 mer duplex oligo, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2LT0 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 26 _pdbx_nmr_ensemble.conformers_submitted_total_number 26 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LT0 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LT0 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Varian collection VNMR ? 1 'Accelrys Software Inc.' 'data analysis' Felix ? 2 'Accelrys Software Inc.' 'chemical shift assignment' Felix ? 3 'Accelrys Software Inc.' 'peak picking' Felix ? 4 'Schwieters, Kuszewski, Tjandra and Clore' refinement X-PLOR_NIH ? 5 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' X-PLOR_NIH ? 6 'Schwieters, Kuszewski, Tjandra and Clore' 'geometry optimization' X-PLOR_NIH ? 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LT0 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LT0 _struct.title 'NMR structure of duplex DNA containing the beta-OH-PdG dA base pair: A mutagenic intermediate of acrolein' _struct.pdbx_descriptor "5'-D(*CP*GP*TP*AP*CP*(63G)P*CP*AP*TP*GP*C)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2LT0 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'acrolein adducts, DNA lesions, damaged DNA structure, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A DC 5 "O3'" ? ? ? 1_555 A 63G 6 P ? ? B DC 5 B 63G 6 1_555 ? ? ? ? ? ? ? 1.616 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 3 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 3 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 4 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 4 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 8 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 8 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 9 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 9 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 2LT0 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT B . n A 1 2 DG 2 2 2 DG GUA B . n A 1 3 DT 3 3 3 DT THY B . n A 1 4 DA 4 4 4 DA ADE B . n A 1 5 DC 5 5 5 DC CYT B . n A 1 6 63G 6 6 6 63G ACR B . n A 1 7 DC 7 7 7 DC CYT B . n A 1 8 DA 8 8 8 DA ADE B . n A 1 9 DT 9 9 9 DT THY B . n A 1 10 DG 10 10 10 DG GUA B . n A 1 11 DC 11 11 11 DC CYT B . n B 2 1 DG 1 1 1 DG GUA D . n B 2 2 DC 2 2 2 DC CYT D . n B 2 3 DA 3 3 3 DA ADE D . n B 2 4 DT 4 4 4 DT THY D . n B 2 5 DG 5 5 5 DG GUA D . n B 2 6 DA 6 6 6 DA ADE D . n B 2 7 DG 7 7 7 DG GUA D . n B 2 8 DT 8 8 8 DT THY D . n B 2 9 DA 9 9 9 DA ADE D . n B 2 10 DC 10 10 10 DC CYT D . n B 2 11 DG 11 11 11 DG GUA D . n # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 63G _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id 63G _pdbx_struct_mod_residue.auth_seq_id 6 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2012-06-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id '11 mer duplex oligo-1' 0.5 ? mM ? 1 '11 mer duplex oligo-2' 0.5 ? mM ? 2 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 4 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 2 18 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 122.68 118.90 3.78 0.60 N 2 1 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.18 106.00 4.18 0.60 N 3 1 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.10 122.90 -4.80 0.60 N 4 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.59 108.30 2.29 0.30 N 5 1 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.57 119.70 7.87 1.20 Y 6 1 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.51 108.30 2.21 0.30 N 7 1 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.10 122.90 -3.80 0.60 N 8 1 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.08 108.30 2.78 0.30 N 9 2 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 103.11 108.00 -4.89 0.70 N 10 2 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.11 106.00 4.11 0.60 N 11 2 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.21 122.90 -4.69 0.60 N 12 2 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.48 119.70 7.78 1.20 Y 13 2 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.28 108.30 1.98 0.30 N 14 2 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.16 108.30 1.86 0.30 N 15 3 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.34 106.00 4.34 0.60 N 16 3 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.09 122.90 -4.81 0.60 N 17 3 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.89 108.30 2.59 0.30 N 18 3 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.10 108.30 1.80 0.30 N 19 3 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 118.92 122.90 -3.98 0.60 N 20 3 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? "C2'" D DG 11 ? ? 101.05 105.90 -4.85 0.80 N 21 3 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.08 108.30 2.78 0.30 N 22 4 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 102.45 108.00 -5.55 0.70 N 23 4 C6 B DT 3 ? ? C5 B DT 3 ? ? C7 B DT 3 ? ? 119.13 122.90 -3.77 0.60 N 24 4 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.00 106.00 4.00 0.60 N 25 4 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.09 122.90 -4.81 0.60 N 26 4 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.01 119.70 7.31 1.20 Y 27 4 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.23 108.30 1.93 0.30 N 28 4 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.12 108.30 1.82 0.30 N 29 4 "O4'" D DT 8 ? ? "C1'" D DT 8 ? ? N1 D DT 8 ? ? 110.28 108.30 1.98 0.30 N 30 5 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.50 106.00 4.50 0.60 N 31 5 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.10 122.90 -4.80 0.60 N 32 5 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.84 108.30 2.54 0.30 N 33 5 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.19 108.30 1.89 0.30 N 34 5 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.77 108.30 2.47 0.30 N 35 5 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.02 122.90 -3.88 0.60 N 36 5 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.66 108.30 2.36 0.30 N 37 6 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 103.35 108.00 -4.65 0.70 N 38 6 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 122.68 118.90 3.78 0.60 N 39 6 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.14 106.00 4.14 0.60 N 40 6 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.29 122.90 -4.61 0.60 N 41 6 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.38 108.30 2.08 0.30 N 42 6 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.18 122.90 -3.72 0.60 N 43 7 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 103.63 108.00 -4.37 0.70 N 44 7 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 122.69 118.90 3.79 0.60 N 45 7 C6 B DT 3 ? ? C5 B DT 3 ? ? C7 B DT 3 ? ? 119.27 122.90 -3.63 0.60 N 46 7 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.13 106.00 4.13 0.60 N 47 7 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.11 122.90 -4.79 0.60 N 48 7 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.12 108.30 1.82 0.30 N 49 7 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.65 119.70 7.95 1.20 Y 50 7 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.83 108.30 2.53 0.30 N 51 7 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 111.05 108.30 2.75 0.30 N 52 7 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.19 122.90 -3.71 0.60 N 53 7 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.61 108.30 2.31 0.30 N 54 8 C6 B DT 3 ? ? C5 B DT 3 ? ? C7 B DT 3 ? ? 119.29 122.90 -3.61 0.60 N 55 8 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.08 106.00 4.08 0.60 N 56 8 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.04 122.90 -4.86 0.60 N 57 8 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 110.52 108.30 2.22 0.30 N 58 8 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.73 119.70 8.03 1.20 Y 59 8 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.28 108.30 1.98 0.30 N 60 8 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.14 122.90 -3.76 0.60 N 61 8 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.93 108.30 2.63 0.30 N 62 9 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.11 106.00 4.11 0.60 N 63 9 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.34 122.90 -4.56 0.60 N 64 9 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 112.00 108.30 3.70 0.30 N 65 9 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.47 108.30 3.17 0.30 N 66 9 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.69 108.30 2.39 0.30 N 67 10 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.07 106.00 4.07 0.60 N 68 10 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.20 122.90 -4.70 0.60 N 69 10 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.94 108.30 2.64 0.30 N 70 10 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.01 122.90 -3.89 0.60 N 71 11 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.33 106.00 4.33 0.60 N 72 11 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.05 122.90 -4.85 0.60 N 73 11 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.65 108.30 2.35 0.30 N 74 11 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.17 108.30 1.87 0.30 N 75 11 "O4'" D DA 6 ? ? "C1'" D DA 6 ? ? N9 D DA 6 ? ? 110.37 108.30 2.07 0.30 N 76 11 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 118.87 122.90 -4.03 0.60 N 77 11 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.30 108.30 2.00 0.30 N 78 12 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 122.59 118.90 3.69 0.60 N 79 12 C6 B DT 3 ? ? C5 B DT 3 ? ? C7 B DT 3 ? ? 119.28 122.90 -3.62 0.60 N 80 12 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.19 106.00 4.19 0.60 N 81 12 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.14 122.90 -4.76 0.60 N 82 12 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.73 108.30 2.43 0.30 N 83 12 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.26 122.90 -3.64 0.60 N 84 13 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.02 106.00 4.02 0.60 N 85 13 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.35 122.90 -4.55 0.60 N 86 13 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.68 108.30 2.38 0.30 N 87 13 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 118.91 122.90 -3.99 0.60 N 88 14 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 122.79 118.90 3.89 0.60 N 89 14 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.16 106.00 4.16 0.60 N 90 14 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.36 122.90 -4.54 0.60 N 91 14 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 111.36 108.30 3.06 0.30 N 92 14 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.30 119.70 7.60 1.20 Y 93 14 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? "C2'" D DG 5 ? ? 100.73 105.90 -5.17 0.80 N 94 14 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 111.20 108.30 2.90 0.30 N 95 15 "O4'" B DC 1 ? ? "C4'" B DC 1 ? ? "C3'" B DC 1 ? ? 110.09 106.00 4.09 0.60 N 96 15 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 103.26 108.00 -4.74 0.70 N 97 15 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.07 106.00 4.07 0.60 N 98 15 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.16 122.90 -4.74 0.60 N 99 15 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.83 108.30 2.53 0.30 N 100 15 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 112.88 108.30 4.58 0.30 N 101 15 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.15 122.90 -3.75 0.60 N 102 16 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 103.79 108.00 -4.21 0.70 N 103 16 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.18 106.00 4.18 0.60 N 104 16 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.20 122.90 -4.70 0.60 N 105 16 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 111.01 108.30 2.71 0.30 N 106 16 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.70 108.30 3.40 0.30 N 107 16 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 118.85 122.90 -4.05 0.60 N 108 16 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.16 108.30 2.86 0.30 N 109 17 C6 B DT 3 ? ? C5 B DT 3 ? ? C7 B DT 3 ? ? 119.28 122.90 -3.62 0.60 N 110 17 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.10 106.00 4.10 0.60 N 111 17 "C3'" B 63G 6 ? ? "O3'" B 63G 6 ? ? P B DC 7 ? ? 127.00 119.70 7.30 1.20 Y 112 17 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? "C2'" B DC 7 ? ? 101.01 105.90 -4.89 0.80 N 113 17 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.39 108.30 2.09 0.30 N 114 17 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.30 122.90 -4.60 0.60 N 115 17 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 111.43 108.30 3.13 0.30 N 116 17 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.89 108.30 2.59 0.30 N 117 17 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.13 119.70 7.43 1.20 Y 118 18 "O4'" B DC 1 ? ? "C4'" B DC 1 ? ? "C3'" B DC 1 ? ? 110.26 106.00 4.26 0.60 N 119 18 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 109.96 106.00 3.96 0.60 N 120 18 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.25 122.90 -4.65 0.60 N 121 18 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.59 108.30 2.29 0.30 N 122 19 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 109.95 106.00 3.95 0.60 N 123 19 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.16 108.30 1.86 0.30 N 124 19 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.28 122.90 -4.62 0.60 N 125 19 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.52 108.30 3.22 0.30 N 126 19 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.52 119.70 7.82 1.20 Y 127 19 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 118.70 122.90 -4.20 0.60 N 128 20 C6 B DT 3 ? ? C5 B DT 3 ? ? C7 B DT 3 ? ? 119.28 122.90 -3.62 0.60 N 129 20 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.28 106.00 4.28 0.60 N 130 20 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.14 108.30 1.84 0.30 N 131 20 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.16 122.90 -4.74 0.60 N 132 20 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 112.10 108.30 3.80 0.30 N 133 20 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.08 122.90 -3.82 0.60 N 134 21 C6 B DT 3 ? ? C5 B DT 3 ? ? C7 B DT 3 ? ? 119.27 122.90 -3.63 0.60 N 135 21 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 109.84 106.00 3.84 0.60 N 136 21 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.04 122.90 -4.86 0.60 N 137 21 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.97 108.30 2.67 0.30 N 138 21 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.80 108.30 2.50 0.30 N 139 21 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.59 108.30 2.29 0.30 N 140 21 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.27 108.30 1.97 0.30 N 141 21 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.22 122.90 -3.68 0.60 N 142 22 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 122.91 118.90 4.01 0.60 N 143 22 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.16 106.00 4.16 0.60 N 144 22 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.35 122.90 -4.55 0.60 N 145 22 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.60 108.30 2.30 0.30 N 146 22 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.39 108.30 2.09 0.30 N 147 22 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.33 119.70 7.63 1.20 Y 148 22 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.12 122.90 -3.78 0.60 N 149 23 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.35 106.00 4.35 0.60 N 150 23 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.06 122.90 -4.84 0.60 N 151 23 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.29 108.30 1.99 0.30 N 152 23 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 111.57 108.30 3.27 0.30 N 153 23 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.64 108.30 2.34 0.30 N 154 23 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.82 108.30 2.52 0.30 N 155 24 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 103.24 108.00 -4.76 0.70 N 156 24 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 122.54 118.90 3.64 0.60 N 157 24 C6 B DT 3 ? ? C5 B DT 3 ? ? C7 B DT 3 ? ? 119.21 122.90 -3.69 0.60 N 158 24 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.07 106.00 4.07 0.60 N 159 24 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.12 122.90 -4.78 0.60 N 160 24 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 112.21 108.30 3.91 0.30 N 161 24 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.49 108.30 3.19 0.30 N 162 24 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 126.95 119.70 7.25 1.20 Y 163 24 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.43 108.30 2.13 0.30 N 164 24 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.79 108.30 2.49 0.30 N 165 24 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.17 108.30 1.87 0.30 N 166 25 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 101.45 108.00 -6.55 0.70 N 167 25 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.18 106.00 4.18 0.60 N 168 25 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.12 122.90 -4.78 0.60 N 169 25 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.23 108.30 1.93 0.30 N 170 25 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.14 122.90 -3.76 0.60 N 171 25 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.96 108.30 3.66 0.30 N 172 26 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 102.64 108.00 -5.36 0.70 N 173 26 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 122.52 118.90 3.62 0.60 N 174 26 "O4'" B DC 5 ? ? "C4'" B DC 5 ? ? "C3'" B DC 5 ? ? 110.06 106.00 4.06 0.60 N 175 26 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 118.34 122.90 -4.56 0.60 N 176 26 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.20 119.70 7.50 1.20 Y 177 26 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.25 108.30 1.95 0.30 N 178 26 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 111.59 108.30 3.29 0.30 N 179 26 C6 D DT 8 ? ? C5 D DT 8 ? ? C7 D DT 8 ? ? 119.22 122.90 -3.68 0.60 N 180 26 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.15 108.30 1.85 0.30 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2LT0 'double helix' 2LT0 'b-form double helix' 2LT0 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.705 -0.260 0.080 -2.371 0.429 -2.368 1 B_DC1:DG11_D B 1 ? D 11 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 -0.745 -0.277 0.089 -4.000 -7.794 0.583 2 B_DG2:DC10_D B 2 ? D 10 ? 19 1 1 A DT 3 1_555 B DA 9 1_555 -0.124 -0.159 0.213 -0.882 -7.968 -6.119 3 B_DT3:DA9_D B 3 ? D 9 ? 20 1 1 A DA 4 1_555 B DT 8 1_555 0.002 -0.199 0.230 11.682 -9.467 -1.872 4 B_DA4:DT8_D B 4 ? D 8 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 0.493 -0.277 0.046 10.408 -17.421 -2.529 5 B_DC5:DG7_D B 5 ? D 7 ? 19 1 1 A DC 7 1_555 B DG 5 1_555 0.642 -0.315 0.043 -1.422 -8.113 -2.870 6 B_DC7:DG5_D B 7 ? D 5 ? 19 1 1 A DA 8 1_555 B DT 4 1_555 0.181 -0.198 0.111 -11.136 -12.774 -1.248 7 B_DA8:DT4_D B 8 ? D 4 ? 20 1 1 A DT 9 1_555 B DA 3 1_555 -0.228 -0.180 0.128 -12.249 -7.224 -0.980 8 B_DT9:DA3_D B 9 ? D 3 ? 20 1 1 A DG 10 1_555 B DC 2 1_555 -0.736 -0.298 0.156 -2.747 -6.828 0.426 9 B_DG10:DC2_D B 10 ? D 2 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.785 -0.323 0.036 1.397 -1.163 -0.309 10 B_DC11:DG1_D B 11 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 0.361 1.054 3.624 -3.649 27.461 18.897 -4.034 -1.408 2.887 55.855 7.422 33.430 1 BB_DC1DG2:DC10DG11_DD B 1 ? D 11 ? B 2 ? D 10 ? 1 A DG 2 1_555 B DC 10 1_555 A DT 3 1_555 B DA 9 1_555 -0.656 -0.613 3.115 -2.005 0.545 35.372 -1.084 0.796 3.137 0.896 3.297 35.431 2 BB_DG2DT3:DA9DC10_DD B 2 ? D 10 ? B 3 ? D 9 ? 1 A DT 3 1_555 B DA 9 1_555 A DA 4 1_555 B DT 8 1_555 0.150 -1.035 2.910 -1.079 7.293 28.962 -3.298 -0.483 2.571 14.292 2.115 29.867 3 BB_DT3DA4:DT8DA9_DD B 3 ? D 9 ? B 4 ? D 8 ? 1 A DA 4 1_555 B DT 8 1_555 A DC 5 1_555 B DG 7 1_555 -0.250 -0.217 3.335 2.432 -0.619 42.771 -0.235 0.589 3.319 -0.847 -3.331 42.841 4 BB_DA4DC5:DG7DT8_DD B 4 ? D 8 ? B 5 ? D 7 ? 1 A DC 5 1_555 B DG 7 1_555 A DC 7 1_555 B DG 5 1_555 1.033 0.893 6.830 3.566 -2.980 73.558 0.943 -0.624 6.832 -2.487 -2.975 73.684 5 BB_DC5DC7:DG5DG7_DD B 5 ? D 7 ? B 7 ? D 5 ? 1 A DC 7 1_555 B DG 5 1_555 A DA 8 1_555 B DT 4 1_555 -0.089 -1.175 3.405 -0.726 8.319 31.565 -3.532 0.032 3.008 14.967 1.306 32.624 6 BB_DC7DA8:DT4DG5_DD B 7 ? D 5 ? B 8 ? D 4 ? 1 A DA 8 1_555 B DT 4 1_555 A DT 9 1_555 B DA 3 1_555 -0.265 -0.844 3.308 -0.438 1.810 30.929 -1.931 0.412 3.258 3.389 0.819 30.984 7 BB_DA8DT9:DA3DT4_DD B 8 ? D 4 ? B 9 ? D 3 ? 1 A DT 9 1_555 B DA 3 1_555 A DG 10 1_555 B DC 2 1_555 0.597 -0.597 2.859 0.511 8.154 29.529 -2.504 -1.045 2.615 15.625 -0.980 30.614 8 BB_DT9DG10:DC2DA3_DD B 9 ? D 3 ? B 10 ? D 2 ? 1 A DG 10 1_555 B DC 2 1_555 A DC 11 1_555 B DG 1 1_555 0.087 -0.265 3.154 -0.180 -4.438 40.835 0.089 -0.142 3.164 -6.338 0.257 41.066 9 BB_DG10DC11:DG1DC2_DD B 10 ? D 2 ? B 11 ? D 1 ? #