HEADER TRANSCRIPTION 14-MAY-12 2LT3 TITLE SOLUTION NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF CDNL FROM TITLE 2 MYXOCOCCUS XANTHUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, CARD FAMILY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS; SOURCE 3 ORGANISM_TAXID: 246197; SOURCE 4 STRAIN: DK 1622; SOURCE 5 GENE: MXAN_2627; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CDNL, CARD, TRCF-RID, PF02559, RNA POLYMERASE, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.MIRASSOU,D.GARCIA-MORENO,S.PADMANABHAN,M.A.JIMENEZ REVDAT 3 14-JUN-23 2LT3 1 REMARK SEQADV REVDAT 2 15-OCT-14 2LT3 1 JRNL REVDAT 1 13-NOV-13 2LT3 0 JRNL AUTH A.GALLEGO-GARCIA,Y.MIRASSOU,D.GARCIA-MORENO,M.ELIAS-ARNANZ, JRNL AUTH 2 M.A.JIMENEZ,S.PADMANABHAN JRNL TITL STRUCTURAL INSIGHTS INTO RNA POLYMERASE RECOGNITION AND JRNL TITL 2 ESSENTIAL FUNCTION OF MYXOCOCCUS XANTHUS CDNL. JRNL REF PLOS ONE V. 9 08946 2014 JRNL REFN ESSN 1932-6203 JRNL PMID 25272012 JRNL DOI 10.1371/JOURNAL.PONE.0108946 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.MIRASSOU,D.GARCIA-MORENO,C.M.SANTIVERI,J.SANTORO, REMARK 1 AUTH 2 M.ELIAS-ARNANZ,S.PADMANABHAN,M.A.JIMENEZ REMARK 1 TITL 1H, 13C AND 15N BACKBONE AND SIDE CHAIN RESONANCE REMARK 1 TITL 2 ASSIGNMENTS OF THE C-TERMINAL DOMAIN OF CDNL FROM MYXOCOCCUS REMARK 1 TITL 3 XANTHUS. REMARK 1 REF BIOMOL.NMR ASSIGN. V. 3 9 2009 REMARK 1 REFN ISSN 1874-2718 REMARK 1 PMID 19636935 REMARK 1 DOI 10.1007/S12104-008-9128-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, AMBER REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, ... AND KOLLM REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102799. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1-2 MM [U-100% 13C; U-100% 15N] REMARK 210 CDNLCT, 100 MM SODIUM CHLORIDE, REMARK 210 50 MM SODIUM PHOSPHATE, 2 MM REMARK 210 BETA-MERCAPTOETHANOL, 0.05 % REMARK 210 SODIUM AZIDE, 0.2 MM DSS, 90% REMARK 210 H2O/10% D2O; 2 MM [U-100% 13C; U- REMARK 210 100% 15N] CDNLCT, 100 MM SODIUM REMARK 210 CHLORIDE, 50 MM SODIUM PHOSPHATE, REMARK 210 2 MM BETA-MERCAPTOETHANOL, 0.05 REMARK 210 % SODIUM AZIDE, 0.2 MM DSS, 100% REMARK 210 D2O; 1.5 MM CDNLCT, 100 MM REMARK 210 SODIUM CHLORIDE, 50 MM SODIUM REMARK 210 PHOSPHATE, 2 MM BETA- REMARK 210 MERCAPTOETHANOL, 0.05 % SODIUM REMARK 210 AZIDE, 0.2 MM DSS, 90% H2O/10% REMARK 210 D2O; 1.5 MM CDNLCT, 100 MM REMARK 210 SODIUM CHLORIDE, 50 MM SODIUM REMARK 210 PHOSPHATE, 2 MM BETA- REMARK 210 MERCAPTOETHANOL, 0.05 % SODIUM REMARK 210 AZIDE, 0.2 MM DSS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HN(CO)CA; 3D HNCO; REMARK 210 3D HBHANH; 3D HBHA(CO)NH; 3D REMARK 210 HA(CA)NH; 2D 1H-13C HSQC; 3D 1H- REMARK 210 15N NOESY; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY; 2D 1H-1H COSY; 2D 1H- REMARK 210 1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, TALOS, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 6 ARG A 61 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 10 -82.29 -117.68 REMARK 500 1 GLU A 11 -34.50 -142.10 REMARK 500 1 ILE A 12 105.20 -59.82 REMARK 500 1 SER A 31 108.90 -40.68 REMARK 500 1 CYS A 97 -164.66 -168.78 REMARK 500 2 HIS A 3 79.33 -104.40 REMARK 500 2 ARG A 10 -70.80 -88.84 REMARK 500 2 GLU A 11 -36.21 -170.65 REMARK 500 2 SER A 31 104.19 -52.39 REMARK 500 2 CYS A 97 -165.01 -167.55 REMARK 500 3 ARG A 10 -80.95 -120.46 REMARK 500 3 GLU A 11 -32.65 -141.65 REMARK 500 3 SER A 31 106.15 -44.71 REMARK 500 3 ASP A 96 29.37 47.83 REMARK 500 3 CYS A 97 -166.14 -161.17 REMARK 500 4 ARG A 10 -66.63 -93.02 REMARK 500 4 GLU A 11 -40.62 -172.02 REMARK 500 5 LEU A 9 -168.47 -77.76 REMARK 500 5 ARG A 10 -84.80 -128.54 REMARK 500 5 GLU A 11 -38.33 -138.83 REMARK 500 5 ILE A 12 109.89 -59.95 REMARK 500 5 SER A 31 104.14 -45.42 REMARK 500 5 CYS A 97 -169.76 -160.87 REMARK 500 5 ILE A 109 -68.04 -98.41 REMARK 500 6 ARG A 10 -75.75 -124.16 REMARK 500 6 GLU A 11 -35.28 -147.80 REMARK 500 6 ILE A 109 -67.67 -96.41 REMARK 500 7 HIS A 3 -50.55 -120.21 REMARK 500 7 ARG A 10 -85.62 -135.82 REMARK 500 7 GLU A 11 -48.75 -160.87 REMARK 500 7 SER A 31 104.23 -51.38 REMARK 500 7 CYS A 97 -167.04 -163.41 REMARK 500 7 ILE A 109 -67.99 -91.91 REMARK 500 7 ASN A 111 70.59 59.76 REMARK 500 8 ARG A 10 -84.15 -119.45 REMARK 500 8 GLU A 11 -30.60 -146.15 REMARK 500 8 SER A 31 105.22 -39.06 REMARK 500 8 ASP A 96 24.55 45.38 REMARK 500 8 CYS A 97 -164.96 -166.00 REMARK 500 9 ARG A 10 -87.31 -130.99 REMARK 500 9 GLU A 11 -50.68 -160.45 REMARK 500 9 ILE A 109 -67.51 -95.43 REMARK 500 9 ASN A 111 69.84 60.36 REMARK 500 10 ARG A 10 -78.68 -111.77 REMARK 500 10 GLU A 11 -32.82 -151.79 REMARK 500 10 ILE A 12 109.89 -59.10 REMARK 500 10 SER A 31 104.27 -45.40 REMARK 500 10 LEU A 93 -70.13 -59.10 REMARK 500 10 ASN A 111 78.85 53.95 REMARK 500 11 ARG A 10 -86.31 -114.88 REMARK 500 REMARK 500 THIS ENTRY HAS 108 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 41 0.07 SIDE CHAIN REMARK 500 7 TYR A 41 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2LT4 RELATED DB: PDB REMARK 900 RELATED ID: 18151 RELATED DB: BMRB REMARK 900 CDNL REMARK 900 RELATED ID: 15977 RELATED DB: BMRB DBREF 2LT3 A 5 113 UNP Q1D927 Q1D927_MYXXD 56 164 SEQADV 2LT3 GLY A 1 UNP Q1D927 EXPRESSION TAG SEQADV 2LT3 SER A 2 UNP Q1D927 EXPRESSION TAG SEQADV 2LT3 HIS A 3 UNP Q1D927 EXPRESSION TAG SEQADV 2LT3 MET A 4 UNP Q1D927 EXPRESSION TAG SEQRES 1 A 113 GLY SER HIS MET GLY SER VAL GLY LEU ARG GLU ILE ILE SEQRES 2 A 113 SER GLU GLU ASP VAL LYS GLN VAL TYR SER ILE LEU LYS SEQRES 3 A 113 GLU LYS ASP ILE SER VAL ASP SER THR THR TRP ASN ARG SEQRES 4 A 113 ARG TYR ARG GLU TYR MET GLU LYS ILE LYS THR GLY SER SEQRES 5 A 113 VAL PHE GLU ILE ALA GLU VAL LEU ARG ASP LEU TYR LEU SEQRES 6 A 113 LEU LYS GLY ASP LYS ASP LEU SER PHE GLY GLU ARG LYS SEQRES 7 A 113 MET LEU ASP THR ALA ARG SER LEU LEU ILE LYS GLU LEU SEQRES 8 A 113 SER LEU ALA LYS ASP CYS SER GLU ASP GLU ILE GLU SER SEQRES 9 A 113 ASP LEU LYS LYS ILE PHE ASN LEU ALA HELIX 1 1 SER A 14 LYS A 26 1 13 HELIX 2 2 ASP A 33 ILE A 48 1 16 HELIX 3 3 SER A 52 GLY A 68 1 17 HELIX 4 4 SER A 73 ASP A 96 1 24 HELIX 5 5 GLU A 99 PHE A 110 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1