HEADER HYDROLASE 14-MAY-12 2LT5 TITLE ZYMOGEN-FLG OF THE ONCONASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN P-30; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ONCONASE; COMPND 5 EC: 3.1.27.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RANA PIPIENS; SOURCE 3 ORGANISM_COMMON: NORTHERN LEOPARD FROG; SOURCE 4 ORGANISM_TAXID: 8404; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PONCYP KEYWDS RIBONUCLEASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.VILANOVA,M.CALLIS,D.V.LAURENTS,M.RIBO,M.BRUIX,S.SERRANO REVDAT 4 14-JUN-23 2LT5 1 REMARK REVDAT 3 20-FEB-13 2LT5 1 REMARK REVDAT 2 30-JAN-13 2LT5 1 JRNL REVDAT 1 24-OCT-12 2LT5 0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.SERRANO,M.CALLIS,M.VILANOVA,A.BENITO,D.V.LAURENTS,M.RIBO, REMARK 1 AUTH 2 M.BRUIX REMARK 1 TITL (1)H, (13)C AND (15)N RESONANCE ASSIGNMENTS OF THE ONCONASE REMARK 1 TITL 2 FL-G ZYMOGEN. REMARK 1 REF BIOMOL.NMR ASSIGN. 2012 REMARK 1 REFN ESSN 1874-270X REMARK 1 PMID 22392335 REMARK 1 DOI 10.1007/S12104-012-9367-0 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, AMBER 9.0 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CASE, DARDEN, CHEATHAM, REMARK 3 III, SIMMERLING, WANG, DUKE, LUO, AND KOLLMAN REMARK 3 (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: GIBBS BOLTZMANN MINIMIZATION REMARK 4 REMARK 4 2LT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102801. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308; 303 REMARK 210 PH : NULL; NULL REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 25 UL BUFFER 10X, 200 UL H2O MQ, REMARK 210 2 UL DSS, 2 UL NAN3, 2.8 MM [U- REMARK 210 100% 15N, 13C] ONC_FLG, 90% H2O/ REMARK 210 10% D2O; 25 UL BUFFER 10X, 200 REMARK 210 UL [U-100% 2H] D2O, 2 UL DSS, 2 REMARK 210 UL NAN3, 1.8 MM [U-100% 15N] ONC_ REMARK 210 FLG, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D CBCANH; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACO; 3D 1H-13C NOESY; 3D REMARK 210 1H-15N NOESY; 3D HNCO; 2D 1H-13C REMARK 210 HSQC; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1.3, SPARKY 3.113, TALOS REMARK 210 TALOS +, CYANA 2.1 REMARK 210 METHOD USED : ENERGY MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 ARG A 88 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 58 22.64 -147.75 REMARK 500 1 THR A 62 108.20 -162.43 REMARK 500 1 ASP A 68 -19.03 -146.09 REMARK 500 2 HIS A 58 25.19 -155.15 REMARK 500 2 THR A 62 115.76 -161.98 REMARK 500 2 ASP A 68 -27.76 -154.67 REMARK 500 3 HIS A 58 22.64 -149.95 REMARK 500 3 THR A 62 114.71 -163.65 REMARK 500 3 ASP A 68 -43.01 -147.86 REMARK 500 4 VAL A 27 -44.60 -130.10 REMARK 500 4 PHE A 40 20.53 -145.36 REMARK 500 4 SER A 44 71.89 43.47 REMARK 500 4 LEU A 45 2.80 -67.60 REMARK 500 4 HIS A 58 22.82 -148.84 REMARK 500 4 THR A 62 104.19 -162.38 REMARK 500 4 ASP A 68 -33.36 -151.03 REMARK 500 5 HIS A 58 21.96 -147.88 REMARK 500 5 THR A 62 105.76 -161.26 REMARK 500 5 ASP A 68 -20.07 -160.55 REMARK 500 6 LYS A 13 170.28 -56.81 REMARK 500 6 VAL A 27 -55.49 -124.28 REMARK 500 6 PHE A 40 19.60 -144.64 REMARK 500 6 SER A 44 72.04 48.50 REMARK 500 6 LEU A 45 0.22 -68.59 REMARK 500 6 HIS A 58 14.91 -141.70 REMARK 500 6 ASP A 68 -22.05 -148.28 REMARK 500 7 VAL A 27 -54.49 -121.28 REMARK 500 7 SER A 44 71.83 40.35 REMARK 500 7 HIS A 58 22.81 -147.45 REMARK 500 7 THR A 62 109.73 -162.32 REMARK 500 7 ASP A 68 -29.88 -152.89 REMARK 500 8 PHE A 40 8.95 -150.81 REMARK 500 8 HIS A 58 22.27 -146.52 REMARK 500 8 THR A 62 107.48 -163.26 REMARK 500 8 ASP A 68 -26.23 -152.16 REMARK 500 8 PRO A 91 0.41 -69.37 REMARK 500 9 LEU A 45 75.31 55.13 REMARK 500 9 HIS A 58 21.25 -154.39 REMARK 500 9 THR A 62 109.88 -162.67 REMARK 500 9 ASP A 68 -26.44 -153.16 REMARK 500 9 CYS A 78 62.45 39.55 REMARK 500 10 PHE A 40 14.53 -140.62 REMARK 500 10 HIS A 58 23.65 -153.04 REMARK 500 10 THR A 62 114.41 -160.18 REMARK 500 10 ASP A 68 -17.01 -169.43 REMARK 500 10 PRO A 91 0.73 -69.56 REMARK 500 11 HIS A 58 22.85 -152.34 REMARK 500 11 THR A 62 112.29 -162.80 REMARK 500 11 ASP A 68 -38.68 -153.25 REMARK 500 11 HIS A 77 0.54 -61.79 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 7 TYR A 5 0.07 SIDE CHAIN REMARK 500 20 TYR A 5 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17973 RELATED DB: BMRB DBREF 2LT5 A 1 32 UNP P22069 RNP30_RANPI 73 104 DBREF 2LT5 A 50 104 UNP P22069 RNP30_RANPI 2 56 SEQADV 2LT5 GLY A 33 UNP P22069 LINKER SEQADV 2LT5 SER A 34 UNP P22069 LINKER SEQADV 2LT5 GLY A 35 UNP P22069 LINKER SEQADV 2LT5 GLY A 36 UNP P22069 LINKER SEQADV 2LT5 SER A 37 UNP P22069 LINKER SEQADV 2LT5 GLY A 38 UNP P22069 LINKER SEQADV 2LT5 ILE A 39 UNP P22069 LINKER SEQADV 2LT5 PHE A 40 UNP P22069 LINKER SEQADV 2LT5 LEU A 41 UNP P22069 LINKER SEQADV 2LT5 GLU A 42 UNP P22069 LINKER SEQADV 2LT5 THR A 43 UNP P22069 LINKER SEQADV 2LT5 SER A 44 UNP P22069 LINKER SEQADV 2LT5 LEU A 45 UNP P22069 LINKER SEQADV 2LT5 SER A 46 UNP P22069 LINKER SEQADV 2LT5 ALA A 47 UNP P22069 LINKER SEQADV 2LT5 GLY A 48 UNP P22069 LINKER SEQADV 2LT5 SER A 49 UNP P22069 LINKER SEQRES 1 A 120 ARG PRO CYS LYS TYR LYS LEU LYS LYS SER THR ASN LYS SEQRES 2 A 120 PHE CYS VAL THR CYS GLU ASN GLN ALA PRO VAL HIS PHE SEQRES 3 A 120 VAL GLY VAL GLY SER CYS GLY SER GLY GLY SER GLY ILE SEQRES 4 A 120 PHE LEU GLU THR SER LEU SER ALA GLY SER ASP TRP LEU SEQRES 5 A 120 THR PHE GLN LYS LYS HIS ILE THR ASN THR ARG ASP VAL SEQRES 6 A 120 ASP CYS ASP ASN ILE MET SER THR ASN LEU PHE HIS CYS SEQRES 7 A 120 LYS ASP LYS ASN THR PHE ILE TYR SER ARG PRO GLU PRO SEQRES 8 A 120 VAL LYS ALA ILE CYS LYS GLY ILE ILE ALA SER LYS ASN SEQRES 9 A 120 VAL LEU THR THR SER GLU PHE TYR LEU SER ASP CYS ASN SEQRES 10 A 120 VAL THR SER HELIX 1 1 ASP A 50 HIS A 58 1 9 HELIX 2 2 PRO A 89 ALA A 94 1 6 SHEET 1 A 4 TYR A 5 ASN A 12 0 SHEET 2 A 4 PHE A 111 VAL A 118 -1 O ASN A 117 N LYS A 6 SHEET 3 A 4 LYS A 81 TYR A 86 -1 N PHE A 84 O SER A 114 SHEET 4 A 4 ILE A 59 THR A 60 1 N THR A 60 O ILE A 85 SHEET 1 B 2 PHE A 14 CYS A 18 0 SHEET 2 B 2 PRO A 23 VAL A 29 -1 O GLY A 28 N CYS A 15 SSBOND 1 CYS A 3 CYS A 78 1555 1555 2.03 SSBOND 2 CYS A 15 CYS A 32 1555 1555 2.04 SSBOND 3 CYS A 18 CYS A 96 1555 1555 2.03 SSBOND 4 CYS A 67 CYS A 116 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1