HEADER ELECTRON TRANSPORT 29-MAY-12 2LTL TITLE SOLUTION NMR STRUCTURE OF NIFU-LIKE PROTEIN FROM SACCHAROMYCES TITLE 2 CEREVISIAE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET TITLE 3 YR313A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NIFU-LIKE PROTEIN, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 17-124; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: NFU1, NUB1, YKL040C, YKL253; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15_NESG KEYWDS NIFU-LIKE PROTEIN, STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, NESG, MITOCHONDRIAL PROTEIN PARTNERSHIP, MPP, PSI- KEYWDS 3 BIOLOGY, PROTEIN STRUCTURE INITIATIVE, ELECTRON TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,R.XIAO,K.HAMILTON,H.JANJUA,R.SHASTRY,E.KOHAN,T.B.ACTON, AUTHOR 2 J.K.EVERETT,H.LEE,Y.J.HUANG,G.T.MONTELIONE,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG),MITOCHONDRIAL PROTEIN PARTNERSHIP (MPP) REVDAT 3 14-JUN-23 2LTL 1 REMARK SEQADV REVDAT 2 01-AUG-12 2LTL 1 AUTHOR KEYWDS REVDAT 1 25-JUL-12 2LTL 0 JRNL AUTH G.LIU,R.XIAO,K.HAMILTON,H.JANJUA,R.SHASTRY,E.KOHAN, JRNL AUTH 2 T.B.ACTON,J.K.EVERETT,H.LEE,Y.J.HUANG,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF NIFU-LIKE PROTEIN FROM JRNL TITL 2 SACCHAROMYCES CEREVISIAE, NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM (NESG) TARGET YR313A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LTL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000102817. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.027 MM [U-100% 13C; U-100% REMARK 210 15N] YR313A.037, 450 MM NACL, 25 REMARK 210 MM NA2PO4, 10 MM DTT, 20 UM REMARK 210 ZNSO4, 1 X PROTEINASE INHIBITORS, REMARK 210 0.02 % NAN3, 5 % D2O, 90% H2O/ REMARK 210 10% D2O; 0.52 MM [U-10% 13C; U- REMARK 210 100% 15N] YR313A.040, 450 MM REMARK 210 NACL, 25 MM NA2PO4, 10 MM DTT, REMARK 210 20 UM ZNSO4, 1 X PROTEINASE REMARK 210 INHIBITORS, 0.02 % NAN3, 5 % D2O, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 3D 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ, PINE, REMARK 210 SPARKY, TALOS+, PALES, REDCAT, REMARK 210 PSVS REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE REMARK 210 DYNAMICS, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 99.40 -66.12 REMARK 500 1 ASP A 36 -58.59 -174.26 REMARK 500 1 LYS A 118 88.63 -53.69 REMARK 500 2 HIS A 5 84.35 -150.92 REMARK 500 2 HIS A 6 87.65 -161.59 REMARK 500 2 MET A 11 119.99 -160.94 REMARK 500 2 GLN A 14 33.32 -84.20 REMARK 500 2 ASP A 36 -156.14 -137.16 REMARK 500 2 GLN A 41 -106.11 -116.28 REMARK 500 2 SER A 117 89.74 -66.96 REMARK 500 2 LYS A 118 93.31 -68.86 REMARK 500 3 HIS A 4 -78.21 -74.32 REMARK 500 3 ASP A 36 -64.30 -93.58 REMARK 500 3 GLN A 41 -156.06 -129.64 REMARK 500 3 THR A 42 -146.76 -67.32 REMARK 500 3 LYS A 118 37.18 -142.30 REMARK 500 4 HIS A 10 97.70 -66.18 REMARK 500 4 GLN A 14 91.99 -65.59 REMARK 500 4 ARG A 43 97.02 -57.50 REMARK 500 4 SER A 117 -87.69 -104.43 REMARK 500 5 HIS A 8 44.14 -158.79 REMARK 500 5 SER A 13 33.90 -79.32 REMARK 500 5 ILE A 116 -59.67 -140.49 REMARK 500 5 LYS A 118 41.20 -87.67 REMARK 500 6 HIS A 5 -73.37 -127.53 REMARK 500 6 HIS A 7 95.64 -64.31 REMARK 500 6 GLU A 38 92.06 -59.29 REMARK 500 6 ASP A 81 -74.68 -73.13 REMARK 500 7 ASN A 12 86.42 -67.33 REMARK 500 7 GLU A 113 -70.46 -69.18 REMARK 500 8 HIS A 8 78.42 -160.78 REMARK 500 8 SER A 9 79.01 -100.60 REMARK 500 8 ARG A 43 67.91 67.47 REMARK 500 8 SER A 117 105.33 -59.42 REMARK 500 9 HIS A 7 94.16 -164.66 REMARK 500 9 ARG A 15 79.38 62.18 REMARK 500 9 GLN A 41 -157.84 -103.97 REMARK 500 9 ILE A 116 69.18 -105.52 REMARK 500 9 SER A 117 157.15 62.72 REMARK 500 9 LYS A 118 11.35 -159.23 REMARK 500 10 HIS A 4 78.54 -113.44 REMARK 500 10 GLN A 14 115.08 -160.66 REMARK 500 10 LEU A 30 118.82 -160.74 REMARK 500 10 ARG A 43 107.58 -55.58 REMARK 500 10 SER A 45 -168.57 -103.44 REMARK 500 10 PRO A 72 1.95 -67.25 REMARK 500 11 ARG A 43 97.83 -51.29 REMARK 500 12 HIS A 6 108.93 -162.13 REMARK 500 12 HIS A 7 73.77 -163.75 REMARK 500 12 HIS A 8 20.31 -163.68 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18487 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-YR313A RELATED DB: TARGETTRACK DBREF 2LTL A 12 119 UNP P32860 NFU1_YEAST 17 124 SEQADV 2LTL MET A 1 UNP P32860 EXPRESSION TAG SEQADV 2LTL GLY A 2 UNP P32860 EXPRESSION TAG SEQADV 2LTL HIS A 3 UNP P32860 EXPRESSION TAG SEQADV 2LTL HIS A 4 UNP P32860 EXPRESSION TAG SEQADV 2LTL HIS A 5 UNP P32860 EXPRESSION TAG SEQADV 2LTL HIS A 6 UNP P32860 EXPRESSION TAG SEQADV 2LTL HIS A 7 UNP P32860 EXPRESSION TAG SEQADV 2LTL HIS A 8 UNP P32860 EXPRESSION TAG SEQADV 2LTL SER A 9 UNP P32860 EXPRESSION TAG SEQADV 2LTL HIS A 10 UNP P32860 EXPRESSION TAG SEQADV 2LTL MET A 11 UNP P32860 EXPRESSION TAG SEQRES 1 A 119 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET ASN SER SEQRES 2 A 119 GLN ARG LEU ILE HIS ILE LYS THR LEU THR THR PRO ASN SEQRES 3 A 119 GLU ASN ALA LEU LYS PHE LEU SER THR ASP GLY GLU MET SEQRES 4 A 119 LEU GLN THR ARG GLY SER LYS SER ILE VAL ILE LYS ASN SEQRES 5 A 119 THR ASP GLU ASN LEU ILE ASN HIS SER LYS LEU ALA GLN SEQRES 6 A 119 GLN ILE PHE LEU GLN CYS PRO GLY VAL GLU SER LEU MET SEQRES 7 A 119 ILE GLY ASP ASP PHE LEU THR ILE ASN LYS ASP ARG MET SEQRES 8 A 119 VAL HIS TRP ASN SER ILE LYS PRO GLU ILE ILE ASP LEU SEQRES 9 A 119 LEU THR LYS GLN LEU ALA TYR GLY GLU ASP VAL ILE SER SEQRES 10 A 119 LYS GLU HELIX 1 1 ASP A 54 SER A 61 1 8 HELIX 2 2 SER A 61 CYS A 71 1 11 HELIX 3 3 HIS A 93 GLY A 112 1 20 SHEET 1 A 5 ILE A 19 LEU A 22 0 SHEET 2 A 5 ALA A 29 SER A 34 -1 O LEU A 33 N LYS A 20 SHEET 3 A 5 PHE A 83 LYS A 88 -1 O ILE A 86 N LEU A 30 SHEET 4 A 5 VAL A 74 ILE A 79 -1 N SER A 76 O ASN A 87 SHEET 5 A 5 ILE A 48 LYS A 51 -1 N ILE A 48 O ILE A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1