HEADER SUGAR BINDING PROTEIN 08-JUN-12 2LU3 TITLE SOLUTION NMR STRUCTURE OF THE APO-FORM OF THE BETA2 CARBOHYDRATE TITLE 2 MODULE OF AMP-ACTIVATED PROTEIN KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 67-163; COMPND 5 SYNONYM: AMPK SUBUNIT BETA-2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PRKAB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PPROEXHTC KEYWDS CARBOHYDRATE BINDING MODULE, GLYCOGEN BINDING, SUGAR BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.GOOLEY,A.KOAY,D.STAPLETON REVDAT 2 14-JUN-23 2LU3 1 REMARK SEQADV REVDAT 1 12-JUN-13 2LU3 0 JRNL AUTH A.KOAY,E.PETRIE,M.GORMAN,A.DI PAOLO,J.MOBBS,M.PARKER, JRNL AUTH 2 D.STAPLETON,P.GOOLEY JRNL TITL STRUCTURE AND CARBOHYDRATE BINDING OF THE BETA2-SUBUNIT OF JRNL TITL 2 AMP-ACTIVATED PROTEIN KINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000102834. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 0.05 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-98% 15N] PROTEIN, 50 REMARK 210 MM SODIUM PHOSPHATE, 0.02 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 0.7 MM [U-98% 13C; U-98% 15N] REMARK 210 PROTEIN, 50 MM SODIUM PHOSPHATE, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O; 0.7 MM PROTEIN, 50 MM REMARK 210 SODIUM PHOSPHATE, 0.02 % SODIUM REMARK 210 AZIDE, 100% D2O; 0.7 MM [U-98% REMARK 210 13C; U-98% 15N] PROTEIN, 50 MM REMARK 210 SODIUM PHOSPHATE, 0.02 % SODIUM REMARK 210 AZIDE, 100% D2O; 0.7 MM [U-10% REMARK 210 13C] PROTEIN, 50 MM SODIUM REMARK 210 PHOSPHATE, 0.02 % SODIUM AZIDE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D H(CCO)NH; REMARK 210 3D C(CO)NH; 3D HCCH-TOCSY; 2D REMARK 210 1H-1H TOCSY; 2D 1H-1H NOESY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D HNHA; 3D HNHB; 3D REMARK 210 HACAHB-COSY; 2D 1H-15N HSQC; 2D REMARK 210 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 6 -70.70 -106.94 REMARK 500 1 GLU A 26 -64.91 -136.84 REMARK 500 1 ILE A 47 106.37 -51.55 REMARK 500 1 ASP A 52 -173.48 -172.68 REMARK 500 1 PRO A 81 82.88 -69.76 REMARK 500 1 SER A 85 171.67 -58.43 REMARK 500 2 GLU A 26 -68.73 -138.87 REMARK 500 2 ILE A 47 105.43 -51.21 REMARK 500 2 PRO A 81 81.67 -69.82 REMARK 500 3 LYS A 12 71.59 -118.24 REMARK 500 3 GLN A 15 179.85 -58.33 REMARK 500 3 GLU A 26 -65.80 -144.53 REMARK 500 3 PRO A 81 87.43 -69.70 REMARK 500 3 PHE A 101 -70.97 -98.93 REMARK 500 4 ARG A 6 59.17 -112.58 REMARK 500 4 LYS A 12 68.34 -119.10 REMARK 500 4 THR A 14 174.44 -54.34 REMARK 500 4 GLN A 15 -179.75 -57.41 REMARK 500 4 GLU A 26 -69.05 -142.04 REMARK 500 4 ILE A 47 106.44 -51.42 REMARK 500 4 ASP A 52 -172.83 -172.96 REMARK 500 4 PRO A 81 81.57 -69.70 REMARK 500 5 ILE A 5 133.89 -172.53 REMARK 500 5 GLU A 26 -64.58 -141.52 REMARK 500 5 ILE A 47 103.81 -51.41 REMARK 500 5 PRO A 81 80.66 -69.75 REMARK 500 6 GLN A 15 -176.20 -58.76 REMARK 500 6 ALA A 17 146.42 -170.15 REMARK 500 6 GLU A 26 -65.05 -140.44 REMARK 500 6 ILE A 47 106.03 -51.41 REMARK 500 6 ASP A 52 -171.92 -174.89 REMARK 500 6 PRO A 81 83.99 -69.81 REMARK 500 7 ALA A 2 -70.74 -98.39 REMARK 500 7 ALA A 17 145.69 -178.45 REMARK 500 7 GLU A 26 -62.06 -144.74 REMARK 500 7 ASP A 52 -170.78 -174.50 REMARK 500 7 PRO A 81 81.95 -69.78 REMARK 500 8 ALA A 17 149.61 -170.85 REMARK 500 8 GLU A 26 -62.14 -136.40 REMARK 500 8 ILE A 47 103.30 -51.40 REMARK 500 8 ASP A 52 -174.28 -173.34 REMARK 500 8 PRO A 81 84.28 -69.70 REMARK 500 9 VAL A 11 71.73 -112.74 REMARK 500 9 LYS A 12 73.61 -157.74 REMARK 500 9 GLN A 15 113.52 -164.13 REMARK 500 9 GLU A 26 -64.51 -144.02 REMARK 500 9 ILE A 47 103.83 -50.76 REMARK 500 9 PRO A 81 83.29 -69.75 REMARK 500 10 MET A 3 63.96 -105.35 REMARK 500 10 SER A 10 94.30 58.24 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18507 RELATED DB: BMRB REMARK 900 RELATED ID: 2LU4 RELATED DB: PDB DBREF 2LU3 A 9 105 UNP Q9QZH4 AAKB2_RAT 67 163 SEQADV 2LU3 GLY A 1 UNP Q9QZH4 EXPRESSION TAG SEQADV 2LU3 ALA A 2 UNP Q9QZH4 EXPRESSION TAG SEQADV 2LU3 MET A 3 UNP Q9QZH4 EXPRESSION TAG SEQADV 2LU3 GLY A 4 UNP Q9QZH4 EXPRESSION TAG SEQADV 2LU3 ILE A 5 UNP Q9QZH4 EXPRESSION TAG SEQADV 2LU3 ARG A 6 UNP Q9QZH4 EXPRESSION TAG SEQADV 2LU3 ASN A 7 UNP Q9QZH4 EXPRESSION TAG SEQADV 2LU3 SER A 8 UNP Q9QZH4 EXPRESSION TAG SEQRES 1 A 105 GLY ALA MET GLY ILE ARG ASN SER ASP SER VAL LYS PRO SEQRES 2 A 105 THR GLN GLN ALA ARG PRO THR VAL ILE ARG TRP SER GLU SEQRES 3 A 105 GLY GLY LYS GLU VAL PHE ILE SER GLY SER PHE ASN ASN SEQRES 4 A 105 TRP SER THR LYS ILE PRO LEU ILE LYS SER HIS ASN ASP SEQRES 5 A 105 PHE VAL ALA ILE LEU ASP LEU PRO GLU GLY GLU HIS GLN SEQRES 6 A 105 TYR LYS PHE PHE VAL ASP GLY GLN TRP VAL HIS ASP PRO SEQRES 7 A 105 SER GLU PRO VAL VAL THR SER GLN LEU GLY THR ILE ASN SEQRES 8 A 105 ASN LEU ILE HIS VAL LYS LYS SER ASP PHE GLU VAL PHE SEQRES 9 A 105 ASP HELIX 1 1 PHE A 37 ASN A 39 5 3 SHEET 1 A 3 ILE A 22 TRP A 24 0 SHEET 2 A 3 PHE A 53 ALA A 55 -1 O PHE A 53 N TRP A 24 SHEET 3 A 3 ILE A 47 LYS A 48 -1 N ILE A 47 O VAL A 54 SHEET 1 B 4 ILE A 44 PRO A 45 0 SHEET 2 B 4 VAL A 31 GLY A 35 -1 N ILE A 33 O ILE A 44 SHEET 3 B 4 TYR A 66 VAL A 70 -1 O LYS A 67 N SER A 34 SHEET 4 B 4 GLN A 73 VAL A 75 -1 O GLN A 73 N VAL A 70 SHEET 1 C 2 GLY A 62 HIS A 64 0 SHEET 2 C 2 ILE A 94 VAL A 96 -1 O VAL A 96 N GLY A 62 SHEET 1 D 2 VAL A 83 THR A 84 0 SHEET 2 D 2 ILE A 90 ASN A 91 -1 O ASN A 91 N VAL A 83 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1