HEADER CELL INVASION 12-JUN-12 2LUD TITLE SOLUTION STRUCTURE OF A CONFORMATIONAL MUTANT OF THE ADHESION PROTEIN TITLE 2 DELTA-BD37 FROM BABESIA DIVERGENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYLPHOSPHATIDYLINOSITOL-ANCHORED MEROZOITE SURFACE COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BABESIA DIVERGENS; SOURCE 3 ORGANISM_TAXID: 32595; SOURCE 4 GENE: BD37; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PIVEX 2.4.A KEYWDS APICOMPLEXA, BABESIA, ERYTHROCYTE BINDING PROTEIN, VACCINE, BD37, KEYWDS 2 CELL INVASION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.MURCIANO,P.BARTHE,S.DELBECQ,C.ROUMESTAND REVDAT 2 26-MAR-14 2LUD 1 REMARK REVDAT 1 12-JUN-13 2LUD 0 JRNL AUTH B.MURCIANO,P.BARTHE,T.SCHETTERS,A.GORENFLOT,C.ROUMESTAND, JRNL AUTH 2 S.DELBECQ JRNL TITL SOLUTION STRUCTURE OF A CONFORMATIONAL MUTANT OF THE JRNL TITL 2 ADHESION PROTEIN DELTA-BD37 FROM BABESIA DIVERGENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.BARTHE,B.MURCIANO,T.SCHETTERS,A.GORENFLOT,S.DELBECQ, REMARK 1 AUTH 2 C.ROUMESTAND REMARK 1 TITL 1H, 15N AND 13C BACKBONE RESONANCE ASSIGNMENTS OF A REMARK 1 TITL 2 CONFORMATIONAL MUTANT OF THE ADHESION PROTEIN DELTA-BD37 REMARK 1 TITL 3 FROM BABESIA DIVERGENS. REMARK 1 REF BIOMOL.NMR ASSIGN. V. 7 241 2013 REMARK 1 REFN ISSN 1874-2718 REMARK 1 PMID 22899250 REMARK 1 DOI 10.1007/S12104-012-9418-6 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RECOORD SCRIPTS REMARK 4 REMARK 4 2LUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-12. REMARK 100 THE RCSB ID CODE IS RCSB102844. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.45 MM [U-100% 15N] EDK-DELTA- REMARK 210 BD37, 90% H2O/10% D2O; 0.38 MM [U REMARK 210 -100% 13C; U-100% 15N] EDK-DELTA- REMARK 210 BD37, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D HNCA; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; 3D HCACO; 3D 1H- REMARK 210 13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 4.44, CINDY 1.8, CYANA 2.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 600 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 89 HZ1 LYS A 92 1.57 REMARK 500 OE1 GLU A 211 HZ1 LYS A 215 1.57 REMARK 500 HG SER A 171 OE1 GLU A 173 1.57 REMARK 500 HH21 ARG A 107 OD2 ASP A 110 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 19 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 70 95.97 61.76 REMARK 500 1 ASP A 118 108.69 -47.32 REMARK 500 1 GLN A 167 -25.21 60.49 REMARK 500 1 SER A 230 32.67 -80.66 REMARK 500 1 ALA A 265 -73.77 -105.59 REMARK 500 1 ILE A 289 -62.00 67.74 REMARK 500 1 HIS A 291 164.67 78.03 REMARK 500 2 ASP A 94 -35.97 -164.22 REMARK 500 2 LYS A 116 60.04 64.62 REMARK 500 2 ASP A 141 -70.66 -64.90 REMARK 500 2 GLU A 163 -71.54 -80.37 REMARK 500 2 SER A 164 31.89 -168.56 REMARK 500 2 ALA A 166 -173.68 61.03 REMARK 500 2 GLN A 167 -63.59 -95.10 REMARK 500 2 THR A 169 22.30 -163.34 REMARK 500 2 SER A 230 36.74 -81.16 REMARK 500 2 PRO A 264 123.29 -35.80 REMARK 500 3 GLU A 163 11.74 -151.56 REMARK 500 3 ALA A 166 -78.67 59.13 REMARK 500 3 SER A 260 78.68 -151.68 REMARK 500 3 SER A 261 -54.65 -130.56 REMARK 500 3 PRO A 264 109.51 -19.16 REMARK 500 4 THR A 161 96.54 -162.48 REMARK 500 4 ALA A 166 -48.65 -154.09 REMARK 500 4 GLN A 167 88.87 66.94 REMARK 500 4 ALA A 265 -90.63 -112.21 REMARK 500 5 LYS A 70 95.24 69.76 REMARK 500 5 LYS A 116 60.10 63.60 REMARK 500 5 ASP A 118 105.35 -45.30 REMARK 500 5 ASP A 141 -71.28 -73.40 REMARK 500 5 SER A 165 141.49 -171.24 REMARK 500 5 THR A 169 -175.96 -171.75 REMARK 500 5 SER A 230 41.98 -81.76 REMARK 500 5 ALA A 265 -152.27 -153.96 REMARK 500 5 ILE A 289 -71.82 -37.69 REMARK 500 6 LYS A 70 99.35 45.56 REMARK 500 6 ASP A 94 -29.90 179.66 REMARK 500 6 VAL A 162 140.74 -170.13 REMARK 500 6 SER A 230 45.18 -82.74 REMARK 500 6 SER A 260 -159.81 -96.32 REMARK 500 6 PRO A 264 98.35 -62.24 REMARK 500 7 LYS A 70 115.34 72.29 REMARK 500 7 ASP A 141 -72.57 -70.75 REMARK 500 7 SER A 164 -32.43 -174.32 REMARK 500 7 SER A 165 -84.39 73.45 REMARK 500 7 ALA A 166 139.08 64.93 REMARK 500 7 SER A 230 41.34 -82.74 REMARK 500 7 GLU A 262 96.53 -69.85 REMARK 500 7 HIS A 291 -62.25 -137.85 REMARK 500 8 ASP A 118 98.45 -42.82 REMARK 500 REMARK 500 THIS ENTRY HAS 128 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 107 0.08 SIDE CHAIN REMARK 500 2 ARG A 76 0.08 SIDE CHAIN REMARK 500 8 ARG A 107 0.09 SIDE CHAIN REMARK 500 12 ARG A 80 0.08 SIDE CHAIN REMARK 500 17 ARG A 83 0.07 SIDE CHAIN REMARK 500 17 ARG A 107 0.10 SIDE CHAIN REMARK 500 18 ARG A 76 0.07 SIDE CHAIN REMARK 500 18 ARG A 107 0.12 SIDE CHAIN REMARK 500 18 ARG A 278 0.11 SIDE CHAIN REMARK 500 19 ARG A 278 0.08 SIDE CHAIN REMARK 500 20 ARG A 83 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 14 LYS A 116 24.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JO7 RELATED DB: PDB REMARK 900 ENTRY CONTAINING SOLUTION STRUCTURE OF THE WILD TYPE OF REMARK 900 THIS MOLECULAR SYSTEM REMARK 900 RELATED ID: 18517 RELATED DB: BMRB DBREF 2LUD A 69 292 UNP Q8T117 Q8T117_BABDI 82 305 SEQADV 2LUD ALA A 248 UNP Q8T117 LYS 261 ENGINEERED MUTATION SEQADV 2LUD ALA A 279 UNP Q8T117 GLU 292 ENGINEERED MUTATION SEQADV 2LUD ALA A 283 UNP Q8T117 ASP 296 ENGINEERED MUTATION SEQRES 1 A 224 VAL LYS THR LEU ASP VAL LEU ARG GLY GLU LEU ARG GLY SEQRES 2 A 224 GLN ARG GLU ALA PHE LEU SER GLU ILE ILE LYS SER ASP SEQRES 3 A 224 GLY PRO PHE THR ILE LEU GLN LEU VAL GLY TYR LEU ARG SEQRES 4 A 224 VAL VAL ASP THR ASP LEU LEU LEU LYS VAL ASP SER THR SEQRES 5 A 224 LYS VAL ASP GLU ALA GLY LYS LYS VAL LYS ALA TYR LEU SEQRES 6 A 224 GLU LYS ILE GLY ILE ARG GLY ASP SER VAL GLU ALA ALA SEQRES 7 A 224 LEU ASP ASN LEU MET ILE LYS VAL TYR GLU ILE THR LYS SEQRES 8 A 224 GLY THR VAL GLU SER SER ALA GLN GLY THR ASP SER GLU SEQRES 9 A 224 GLU LEU LYS THR LEU LEU LEU LYS PHE SER GLU ASP LEU SEQRES 10 A 224 LYS ALA GLU GLN GLU LEU HIS SER GLU ALA LYS GLY GLY SEQRES 11 A 224 GLU ALA LEU LEU SER SER MET LYS THR GLN HIS ASP GLU SEQRES 12 A 224 LEU LEU LYS LYS PHE ALA ALA LEU THR PRO THR PHE LEU SEQRES 13 A 224 THR SER GLU ASP ILE SER GLY TYR LEU THR VAL PRO GLU SEQRES 14 A 224 TYR GLY ALA PRO MET ASN ALA ALA LYS TRP ALA LYS VAL SEQRES 15 A 224 GLU GLY MET ILE HIS GLY LYS LEU GLU SER SER GLU VAL SEQRES 16 A 224 PRO ALA ASN LEU LYS ALA LEU VAL ALA GLU LEU ILE GLU SEQRES 17 A 224 LEU ARG ALA GLN MET MET ALA LEU LEU TYR GLY PRO ILE SEQRES 18 A 224 GLY HIS HIS HELIX 1 1 THR A 71 SER A 93 1 23 HELIX 2 2 THR A 98 LEU A 115 1 18 HELIX 3 3 ASP A 118 GLY A 137 1 20 HELIX 4 4 SER A 142 GLY A 160 1 19 HELIX 5 5 SER A 171 LYS A 196 1 26 HELIX 6 6 GLY A 197 LEU A 219 1 23 HELIX 7 7 ASN A 243 GLU A 259 1 17 HELIX 8 8 ALA A 265 TYR A 286 1 22 CISPEP 1 THR A 220 PRO A 221 1 0.08 CISPEP 2 THR A 220 PRO A 221 2 1.44 CISPEP 3 THR A 220 PRO A 221 3 0.17 CISPEP 4 THR A 220 PRO A 221 4 -3.09 CISPEP 5 THR A 220 PRO A 221 5 2.19 CISPEP 6 THR A 220 PRO A 221 6 -2.86 CISPEP 7 THR A 220 PRO A 221 7 -7.64 CISPEP 8 THR A 220 PRO A 221 8 -2.56 CISPEP 9 THR A 220 PRO A 221 9 1.07 CISPEP 10 THR A 220 PRO A 221 10 0.65 CISPEP 11 THR A 220 PRO A 221 11 -0.22 CISPEP 12 THR A 220 PRO A 221 12 -4.81 CISPEP 13 THR A 220 PRO A 221 13 -2.90 CISPEP 14 THR A 220 PRO A 221 14 -3.47 CISPEP 15 THR A 220 PRO A 221 15 -2.25 CISPEP 16 THR A 220 PRO A 221 16 0.61 CISPEP 17 THR A 220 PRO A 221 17 2.65 CISPEP 18 THR A 220 PRO A 221 18 -0.65 CISPEP 19 THR A 220 PRO A 221 19 -0.84 CISPEP 20 THR A 220 PRO A 221 20 -2.20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1