HEADER HYDROLASE 19-JUN-12 2LUO TITLE NMR SOLUTION STRUCTURE OF APO-MPTPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW MOLECULAR WEIGHT PROTEIN-TYROSINE-PHOSPHATASE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PTPASE; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PTPA, RV2234, MT2293, MTCY427.15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKM263; SOURCE 11 OTHER_DETAILS: ORIGINAL PET16BTEV VECTOR WAS DOUBLE NCOI/BLPID SOURCE 12 DIGESTED AND CLONED INTO THE MODIFIED PKM263 (6XHIS TAG PROTGB1-TEV SOURCE 13 BETWEEN NDE1 AND XHO1) VECTOR KEYWDS LOW MOLECULAR WEIGHT TYROSINE PHOSPHATASE, MPTPA, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.STEHLE,S.SREERAMULU,F.LOEHR,C.RICHTER,K.SAXENA,H.R.A.JONKER, AUTHOR 2 H.SCHWALBE REVDAT 4 14-JUN-23 2LUO 1 REMARK SEQADV REVDAT 3 24-OCT-12 2LUO 1 JRNL REVDAT 2 29-AUG-12 2LUO 1 JRNL REVDAT 1 15-AUG-12 2LUO 0 JRNL AUTH T.STEHLE,S.SREERAMULU,F.LOHR,C.RICHTER,K.SAXENA,H.R.JONKER, JRNL AUTH 2 H.SCHWALBE JRNL TITL THE APO-STRUCTURE OF THE LOW MOLECULAR WEIGHT JRNL TITL 2 PROTEIN-TYROSINE PHOSPHATASE A (MPTPA) FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS ALLOWS FOR BETTER TARGET-SPECIFIC DRUG JRNL TITL 4 DEVELOPMENT. JRNL REF J.BIOL.CHEM. V. 287 34569 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22888002 JRNL DOI 10.1074/JBC.M112.399261 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 2.1, CYANA 3.9, CNS 1.1, ARIA 1.2 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING WITH TORSION ANGLE REMARK 3 DYNAMICS, STRUCTURE DETERMINATION WITH AUTOMATED NOE ASSIGNMENT REMARK 3 USING CYANA, FINAL STRUCTURE REFINEMENT IN EXPLICIT WATER WITH REMARK 3 ADDITIONAL DIFFUSION ANISOTROPY DATA USING ARIA PROTOCOLS WITH REMARK 3 CNS. REMARK 4 REMARK 4 2LUO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000102855. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-100% 13C; U-100% 15N] REMARK 210 MPTPA, 50 MM ARGININE / REMARK 210 GLUTAMINE, 25 MM HEPES, 10 MM REMARK 210 DTT, 90% H2O/10% D2O; 1.0 MM [U- REMARK 210 100% 15N] MPTPA, 50 MM ARGININE / REMARK 210 GLUTAMINE, 25 MM HEPES, 10 MM REMARK 210 DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D (H) REMARK 210 C(NC)H; 3D HCD(CG)CB-TOCSY; 3D REMARK 210 (H)CC(CO)NH-TOCSY; 3D (H)CB(CG) REMARK 210 CCH-TOCSY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 2D REMARK 210 (T1,T2,HETNOE) 1H-15N HSQC; 2D REMARK 210 (IPAP) 1H-15N HSQC; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 900 MHZ; 800 MHZ; 600 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, SPARKY 3.114, CARA REMARK 210 1.8.4.2, CYANA 3.9, CNS 1.1, REMARK 210 ARIA 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SORTED ON LOWEST ENERGY AFTER ARIA WATER REFINEMENT REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG12 VAL A 102 H GLU A 103 1.20 REMARK 500 HH22 ARG A 17 HA ASP A 126 1.26 REMARK 500 HA VAL A 138 HG21 VAL A 141 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 5 -177.89 -68.44 REMARK 500 1 HIS A 6 87.70 -156.84 REMARK 500 1 CYS A 16 -88.79 -120.60 REMARK 500 1 MET A 24 -75.61 -62.87 REMARK 500 1 TRP A 48 -70.41 -44.81 REMARK 500 1 HIS A 49 43.73 -109.65 REMARK 500 1 VAL A 102 -156.09 -75.60 REMARK 500 1 GLU A 125 -175.79 -64.67 REMARK 500 1 PRO A 162 -149.89 -87.70 REMARK 500 2 ASN A 14 24.43 48.47 REMARK 500 2 ILE A 15 47.20 -148.23 REMARK 500 2 CYS A 16 -84.56 -161.68 REMARK 500 2 MET A 24 -75.16 -64.21 REMARK 500 2 TRP A 48 -74.65 -43.87 REMARK 500 2 HIS A 49 42.57 -106.25 REMARK 500 2 SER A 52 -162.67 -79.79 REMARK 500 2 VAL A 102 -163.89 -78.45 REMARK 500 2 THR A 119 -62.10 -157.54 REMARK 500 2 LEU A 122 -26.56 -149.95 REMARK 500 2 ASP A 123 138.33 -171.16 REMARK 500 2 GLU A 125 -163.83 -69.85 REMARK 500 2 PRO A 127 155.19 -37.11 REMARK 500 3 LEU A 5 -179.36 -69.19 REMARK 500 3 HIS A 6 89.73 -158.45 REMARK 500 3 CYS A 16 -86.56 -126.10 REMARK 500 3 MET A 24 -74.47 -65.80 REMARK 500 3 TRP A 48 -74.21 -47.07 REMARK 500 3 SER A 52 -158.18 -81.40 REMARK 500 3 VAL A 87 91.34 -66.22 REMARK 500 3 VAL A 102 -162.36 -76.82 REMARK 500 3 ASP A 126 98.97 -162.55 REMARK 500 3 ASN A 160 43.19 -83.89 REMARK 500 3 PRO A 162 -157.84 -87.30 REMARK 500 4 CYS A 16 -89.64 -125.54 REMARK 500 4 MET A 24 -76.12 -63.33 REMARK 500 4 TRP A 48 -77.64 -50.34 REMARK 500 4 HIS A 49 41.12 -101.97 REMARK 500 4 SER A 52 -159.02 -80.27 REMARK 500 4 VAL A 102 -156.98 -76.24 REMARK 500 4 THR A 119 -40.04 -143.36 REMARK 500 4 VAL A 124 -86.92 -95.81 REMARK 500 4 ASP A 126 121.98 178.03 REMARK 500 4 TYR A 129 -35.44 -142.19 REMARK 500 4 PRO A 162 41.21 -82.39 REMARK 500 5 CYS A 16 -88.21 -147.97 REMARK 500 5 MET A 24 -76.66 -63.73 REMARK 500 5 TRP A 48 -74.87 -45.09 REMARK 500 5 HIS A 49 41.17 -107.39 REMARK 500 5 VAL A 102 -153.09 -75.15 REMARK 500 5 SER A 117 95.52 -63.27 REMARK 500 REMARK 500 THIS ENTRY HAS 200 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18533 RELATED DB: BMRB REMARK 900 RELATED ID: 1U2P RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF MPTPA REMARK 900 RELATED ID: 1U2Q RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF MPTPA WITH GLYCEROL IN THE ACTIVE SITE DBREF 2LUO A 1 163 UNP P65716 PTPA_MYCTU 1 163 SEQADV 2LUO GLY A 0 UNP P65716 EXPRESSION TAG SEQRES 1 A 164 GLY MET SER ASP PRO LEU HIS VAL THR PHE VAL CYS THR SEQRES 2 A 164 GLY ASN ILE CYS ARG SER PRO MET ALA GLU LYS MET PHE SEQRES 3 A 164 ALA GLN GLN LEU ARG HIS ARG GLY LEU GLY ASP ALA VAL SEQRES 4 A 164 ARG VAL THR SER ALA GLY THR GLY ASN TRP HIS VAL GLY SEQRES 5 A 164 SER CYS ALA ASP GLU ARG ALA ALA GLY VAL LEU ARG ALA SEQRES 6 A 164 HIS GLY TYR PRO THR ASP HIS ARG ALA ALA GLN VAL GLY SEQRES 7 A 164 THR GLU HIS LEU ALA ALA ASP LEU LEU VAL ALA LEU ASP SEQRES 8 A 164 ARG ASN HIS ALA ARG LEU LEU ARG GLN LEU GLY VAL GLU SEQRES 9 A 164 ALA ALA ARG VAL ARG MET LEU ARG SER PHE ASP PRO ARG SEQRES 10 A 164 SER GLY THR HIS ALA LEU ASP VAL GLU ASP PRO TYR TYR SEQRES 11 A 164 GLY ASP HIS SER ASP PHE GLU GLU VAL PHE ALA VAL ILE SEQRES 12 A 164 GLU SER ALA LEU PRO GLY LEU HIS ASP TRP VAL ASP GLU SEQRES 13 A 164 ARG LEU ALA ARG ASN GLY PRO SER HELIX 1 1 CYS A 16 GLY A 33 1 18 HELIX 2 2 ASP A 55 HIS A 65 1 11 HELIX 3 3 GLY A 77 ALA A 82 1 6 HELIX 4 4 ASP A 90 GLY A 101 1 12 HELIX 5 5 ARG A 111 ASP A 114 5 4 HELIX 6 6 ASP A 131 GLY A 161 1 31 SHEET 1 A 4 VAL A 38 ALA A 43 0 SHEET 2 A 4 LEU A 5 VAL A 10 1 N VAL A 7 O THR A 41 SHEET 3 A 4 LEU A 85 ALA A 88 1 O LEU A 85 N THR A 8 SHEET 4 A 4 VAL A 107 MET A 109 1 O ARG A 108 N LEU A 86 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1