HEADER OXIDOREDUCTASE 21-JUN-12 2LUS TITLE NMR STRUCTURE OF CARCINOSCORPIUS ROTUNDICAUDA THIOREDOXIN RELATED TITLE 2 PROTEIN 16 AND ITS ROLE IN REGULATING TRANSCRIPTION FACTOR NF-KB TITLE 3 ACTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXION; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARCINOSCORPIUS ROTUNDICAUDA; SOURCE 3 ORGANISM_COMMON: MANGROVE HORSESHOE CRAB; SOURCE 4 ORGANISM_TAXID: 6848; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-22B KEYWDS CR-TRP16, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.K.GIRI,J.FAN,S.KUNCHITHAPADAM,J.SIVARAMAN REVDAT 2 19-JUN-13 2LUS 1 JRNL REVDAT 1 11-JUL-12 2LUS 0 JRNL AUTH P.K.GIRI,F.JING-SONG,M.K.SHANMUGAM,J.L.DING,G.SETHI, JRNL AUTH 2 K.SWAMINATHAN,J.SIVARAMAN JRNL TITL NMR STRUCTURE OF CARCINOSCORPIUS ROTUNDICAUDA JRNL TITL 2 THIOREDOXIN-RELATED PROTEIN 16 AND ITS ROLE IN REGULATING JRNL TITL 3 TRANSCRIPTION FACTOR NF-KB ACTIVITY. JRNL REF J.BIOL.CHEM. V. 287 29417 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22763700 JRNL DOI 10.1074/JBC.M112.379859 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LUS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUN-12. REMARK 100 THE RCSB ID CODE IS RCSB102859. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 100 MM [U-100% 15N] SODIUM REMARK 210 CHLORIDE, 5 MM [U-100% 15N] DTT, REMARK 210 1 MM [U-100% 15N] EDTA, 5 % [U- REMARK 210 100% 15N] GLYCEROL, 95% H2O/5% REMARK 210 D2O; 100 MM [U-100% 13C; U-100% REMARK 210 15N] SODIUM CHLORIDE, 5 MM [U- REMARK 210 100% 13C; U-100% 15N] DTT, 1 MM REMARK 210 [U-100% 13C; U-100% 15N] EDTA, 5 REMARK 210 % [U-100% 13C; U-100% 15N] REMARK 210 GLYCEROL, 95% H2O/5% D2O; 100 MM REMARK 210 [U-100% 15N] SODIUM CHLORIDE, 5 REMARK 210 MM [U-100% 15N] DTT, 1 MM [U-100% REMARK 210 15N] EDTA, 8 MG/ML [U-100% 15N] REMARK 210 PF1 PHAGE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D HCCH-TOCSY; 2D 1H- REMARK 210 15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, X-PLOR_NIH, REMARK 210 TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 124 H GLY A 126 1.33 REMARK 500 O SER A 94 H ALA A 97 1.41 REMARK 500 O ALA A 60 H PHE A 62 1.46 REMARK 500 O LEU A 55 H ALA A 60 1.47 REMARK 500 H LYS A 116 O THR A 120 1.47 REMARK 500 OD1 ASP A 25 H ASP A 27 1.50 REMARK 500 O SER A 34 H HIS A 36 1.53 REMARK 500 O SER A 68 H ASP A 70 1.54 REMARK 500 HG SER A 72 OD2 ASP A 75 1.55 REMARK 500 O LYS A 116 H GLY A 119 1.57 REMARK 500 O LYS A 24 H LYS A 26 1.57 REMARK 500 O ALA A 35 H TRP A 37 1.57 REMARK 500 O ASP A 70 N SER A 72 2.01 REMARK 500 O LEU A 112 O MET A 124 2.14 REMARK 500 O SER A 68 N ASP A 70 2.15 REMARK 500 O PRO A 91 N ARG A 93 2.16 REMARK 500 OD1 ASP A 25 N ILE A 28 2.17 REMARK 500 O VAL A 67 OD2 ASP A 70 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 5 122.51 -33.87 REMARK 500 1 ASN A 13 24.74 -79.72 REMARK 500 1 ALA A 19 -24.31 -38.62 REMARK 500 1 LYS A 24 -101.51 28.00 REMARK 500 1 ASP A 25 -69.70 56.07 REMARK 500 1 LYS A 26 13.10 41.63 REMARK 500 1 ASP A 27 -72.68 -144.71 REMARK 500 1 SER A 34 79.26 167.52 REMARK 500 1 ALA A 35 36.44 -65.95 REMARK 500 1 HIS A 36 25.12 -60.12 REMARK 500 1 CYS A 41 40.47 155.84 REMARK 500 1 ALA A 60 94.22 5.36 REMARK 500 1 PRO A 61 37.35 -60.04 REMARK 500 1 VAL A 67 -166.35 -129.12 REMARK 500 1 SER A 68 149.93 83.59 REMARK 500 1 SER A 69 68.25 -47.12 REMARK 500 1 ARG A 71 -11.46 -31.46 REMARK 500 1 SER A 83 3.25 127.79 REMARK 500 1 ASP A 86 62.67 -115.70 REMARK 500 1 TRP A 87 -109.80 -157.19 REMARK 500 1 TYR A 92 -26.23 -29.76 REMARK 500 1 SER A 94 63.16 -105.98 REMARK 500 1 PRO A 96 -25.33 -38.05 REMARK 500 1 ILE A 106 -115.20 -71.69 REMARK 500 1 THR A 107 -3.55 72.05 REMARK 500 1 ILE A 122 -64.75 -131.70 REMARK 500 1 MET A 124 -101.82 -79.19 REMARK 500 1 ASN A 125 49.45 -61.56 REMARK 500 1 ARG A 127 -86.27 -43.70 REMARK 500 1 PHE A 138 -23.91 -36.51 REMARK 500 2 PHE A 3 121.30 62.57 REMARK 500 2 GLN A 5 121.67 -33.65 REMARK 500 2 ASN A 13 21.88 -73.08 REMARK 500 2 LYS A 24 -84.12 27.16 REMARK 500 2 ASP A 25 94.53 45.74 REMARK 500 2 LYS A 26 -21.91 -37.08 REMARK 500 2 ASP A 27 7.12 159.13 REMARK 500 2 SER A 34 81.85 151.18 REMARK 500 2 ALA A 35 68.13 -57.84 REMARK 500 2 CYS A 41 45.94 156.72 REMARK 500 2 PRO A 46 -11.95 -48.78 REMARK 500 2 ALA A 60 94.72 6.94 REMARK 500 2 PRO A 61 37.50 -59.79 REMARK 500 2 VAL A 67 -152.17 -129.73 REMARK 500 2 SER A 68 149.72 71.29 REMARK 500 2 SER A 69 66.24 -41.43 REMARK 500 2 ARG A 71 -9.50 -32.49 REMARK 500 2 SER A 83 3.76 165.05 REMARK 500 2 TRP A 87 -111.48 -153.29 REMARK 500 2 PRO A 91 108.94 -46.36 REMARK 500 REMARK 500 THIS ENTRY HAS 599 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18539 RELATED DB: BMRB DBREF 2LUS A 1 143 UNP A3E0V9 A3E0V9_CARRO 1 143 SEQRES 1 A 143 MET GLU PHE ILE GLN GLY ILE LYS LEU VAL LYS LYS ASN SEQRES 2 A 143 ARG CYS GLU VAL ASN ALA ASN GLU ALA LEU LYS ASP LYS SEQRES 3 A 143 ASP ILE ILE GLY PHE TYR PHE SER ALA HIS TRP CYS PRO SEQRES 4 A 143 PRO CYS ARG GLY PHE THR PRO ILE LEU ALA ASP MET TYR SEQRES 5 A 143 SER GLU LEU VAL ASP ASP SER ALA PRO PHE GLU ILE ILE SEQRES 6 A 143 PHE VAL SER SER ASP ARG SER GLU ASP ASP MET PHE GLN SEQRES 7 A 143 TYR MET MET GLU SER HIS GLY ASP TRP LEU ALA ILE PRO SEQRES 8 A 143 TYR ARG SER GLY PRO ALA SER ASN VAL THR ALA LYS TYR SEQRES 9 A 143 GLY ILE THR GLY ILE PRO ALA LEU VAL ILE VAL LYS LYS SEQRES 10 A 143 ASP GLY THR LEU ILE SER MET ASN GLY ARG GLY GLU VAL SEQRES 11 A 143 GLN SER LEU GLY PRO ARG ALA PHE GLN ASN TRP ALA ARG HELIX 1 1 ALA A 19 LEU A 23 1 5 HELIX 2 2 PHE A 44 ASP A 58 1 15 HELIX 3 3 SER A 72 GLU A 82 1 11 HELIX 4 4 GLY A 95 GLY A 105 1 11 HELIX 5 5 GLY A 126 GLY A 134 1 9 HELIX 6 6 ALA A 137 ALA A 142 1 6 SHEET 1 A 2 LYS A 8 LYS A 11 0 SHEET 2 A 2 CYS A 15 ASN A 18 -1 O VAL A 17 N LEU A 9 SHEET 1 B 4 PHE A 62 PHE A 66 0 SHEET 2 B 4 ILE A 28 PHE A 33 1 N GLY A 30 O GLU A 63 SHEET 3 B 4 ALA A 111 LYS A 116 -1 O VAL A 113 N PHE A 31 SHEET 4 B 4 LEU A 121 SER A 123 -1 O SER A 123 N ILE A 114 CISPEP 1 ILE A 109 PRO A 110 1 -0.11 CISPEP 2 ILE A 109 PRO A 110 2 0.14 CISPEP 3 ILE A 109 PRO A 110 3 0.38 CISPEP 4 ILE A 109 PRO A 110 4 0.19 CISPEP 5 ILE A 109 PRO A 110 5 -0.01 CISPEP 6 ILE A 109 PRO A 110 6 -0.09 CISPEP 7 ILE A 109 PRO A 110 7 0.05 CISPEP 8 ILE A 109 PRO A 110 8 0.31 CISPEP 9 ILE A 109 PRO A 110 9 0.42 CISPEP 10 ILE A 109 PRO A 110 10 0.09 CISPEP 11 ILE A 109 PRO A 110 11 0.29 CISPEP 12 ILE A 109 PRO A 110 12 0.07 CISPEP 13 ILE A 109 PRO A 110 13 0.11 CISPEP 14 ILE A 109 PRO A 110 14 0.14 CISPEP 15 ILE A 109 PRO A 110 15 -0.01 CISPEP 16 ILE A 109 PRO A 110 16 0.03 CISPEP 17 ILE A 109 PRO A 110 17 0.09 CISPEP 18 ILE A 109 PRO A 110 18 0.06 CISPEP 19 ILE A 109 PRO A 110 19 0.04 CISPEP 20 ILE A 109 PRO A 110 20 0.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1