data_2LUT # _entry.id 2LUT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2LUT RCSB RCSB102860 BMRB 18540 WWPDB D_1000102860 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 1MKN PDB 'N-half domain' unspecified 1MKC PDB 'C-half domain' unspecified 2LUU PDB . unspecified 18540 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LUT _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-06-21 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lim, J.' 1 'Yang, D.' 2 'Meng, D.' 3 # _citation.id primary _citation.title ;Structural and Functional Characterization of Two Zebrafish Midkine Proteins Reveals Importance of the Conserved Hinge for Heparin Binding and Embryogenesis ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lim, J.' 1 primary 'Yao, S.' 2 primary 'Meng, D.' 3 primary 'Winkler, C.' 4 primary 'Yang, D.' 5 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Midkine-related growth factor' _entity.formula_weight 13548.513 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 24-146' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Midkine-related growth factor Mdk1, Pleiotrophin 1, Uncharacterized protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSKNKKEKNKGGKGGADCAEWLYGSCVANNGDCGQGMREGTCNEQTRKVKCRVPCNWKKEFGADCKYKFGNWGECDAATS TKSRTGTLQKALFNVECQQTVSVTKPCTTKVKNKPKGKKGKGKGN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSKNKKEKNKGGKGGADCAEWLYGSCVANNGDCGQGMREGTCNEQTRKVKCRVPCNWKKEFGADCKYKFGNWGECDAATS TKSRTGTLQKALFNVECQQTVSVTKPCTTKVKNKPKGKKGKGKGN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LYS n 1 4 ASN n 1 5 LYS n 1 6 LYS n 1 7 GLU n 1 8 LYS n 1 9 ASN n 1 10 LYS n 1 11 GLY n 1 12 GLY n 1 13 LYS n 1 14 GLY n 1 15 GLY n 1 16 ALA n 1 17 ASP n 1 18 CYS n 1 19 ALA n 1 20 GLU n 1 21 TRP n 1 22 LEU n 1 23 TYR n 1 24 GLY n 1 25 SER n 1 26 CYS n 1 27 VAL n 1 28 ALA n 1 29 ASN n 1 30 ASN n 1 31 GLY n 1 32 ASP n 1 33 CYS n 1 34 GLY n 1 35 GLN n 1 36 GLY n 1 37 MET n 1 38 ARG n 1 39 GLU n 1 40 GLY n 1 41 THR n 1 42 CYS n 1 43 ASN n 1 44 GLU n 1 45 GLN n 1 46 THR n 1 47 ARG n 1 48 LYS n 1 49 VAL n 1 50 LYS n 1 51 CYS n 1 52 ARG n 1 53 VAL n 1 54 PRO n 1 55 CYS n 1 56 ASN n 1 57 TRP n 1 58 LYS n 1 59 LYS n 1 60 GLU n 1 61 PHE n 1 62 GLY n 1 63 ALA n 1 64 ASP n 1 65 CYS n 1 66 LYS n 1 67 TYR n 1 68 LYS n 1 69 PHE n 1 70 GLY n 1 71 ASN n 1 72 TRP n 1 73 GLY n 1 74 GLU n 1 75 CYS n 1 76 ASP n 1 77 ALA n 1 78 ALA n 1 79 THR n 1 80 SER n 1 81 THR n 1 82 LYS n 1 83 SER n 1 84 ARG n 1 85 THR n 1 86 GLY n 1 87 THR n 1 88 LEU n 1 89 GLN n 1 90 LYS n 1 91 ALA n 1 92 LEU n 1 93 PHE n 1 94 ASN n 1 95 VAL n 1 96 GLU n 1 97 CYS n 1 98 GLN n 1 99 GLN n 1 100 THR n 1 101 VAL n 1 102 SER n 1 103 VAL n 1 104 THR n 1 105 LYS n 1 106 PRO n 1 107 CYS n 1 108 THR n 1 109 THR n 1 110 LYS n 1 111 VAL n 1 112 LYS n 1 113 ASN n 1 114 LYS n 1 115 PRO n 1 116 LYS n 1 117 GLY n 1 118 LYS n 1 119 LYS n 1 120 GLY n 1 121 LYS n 1 122 GLY n 1 123 LYS n 1 124 GLY n 1 125 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'leopard danio,zebra danio,zebra fish' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'mdka, mdk1, plei1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Danio rerio' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7955 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pGEX-4T-1 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9W767_DANRE _struct_ref.pdbx_db_accession Q9W767 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KNKKEKNKGGKGGADCAEWLYGSCVANNGDCGQGMREGTCNEQTRKVKCRVPCNWKKEFGADCKYKFGNWGECDAATSTK SRTGTLQKALFNVECQQTVSVTKPCTTKVKNKPKGKKGKGKGN ; _struct_ref.pdbx_align_begin 24 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LUT _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 125 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9W767 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 146 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 125 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2LUT GLY A 1 ? UNP Q9W767 ? ? 'EXPRESSION TAG' 1 1 1 2LUT SER A 2 ? UNP Q9W767 ? ? 'EXPRESSION TAG' 2 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D HN(CO)CA' 1 4 1 '3D HNCA' 1 5 1 '3D MQ-(H)CCH-TOCSY' 1 6 1 '13C/ 15N edited-NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;10 mM sodium phosphate, 0.1 mM sodium azide, 100 mM sodium chloride, 1 mM EDTA, 0.8 mM [U-100% 13C; U-100% 15N] protein, 95% H2O, 5% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model Avance _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2LUT _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'NOE distance refinement using CYANA 2.1. Hydrogen bond restraints using H-D exchange experiment' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LUT _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LUT _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Guntert P.' refinement CYANA 2.1 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 1 2 'Johnson, One Moon Scientific' 'data analysis' NMRView 5.04 3 'Cornilescu, Delaglio and Bax' 'geometry optimization' TALOS ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Independent half-domains enriched with disulfide bonds and separated by linker.' _exptl.entry_id 2LUT _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LUT _struct.title 'NMR solution structure of midkine-a' _struct.pdbx_descriptor 'Midkine-related growth factor' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LUT _struct_keywords.pdbx_keywords HORMONE _struct_keywords.text 'beta sheet, independent half-domains, disulfide bond, HORMONE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 18 SG ? ? ? 1_555 A CYS 42 SG ? ? A CYS 18 A CYS 42 1_555 ? ? ? ? ? ? ? 2.119 ? disulf2 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 51 SG ? ? A CYS 26 A CYS 51 1_555 ? ? ? ? ? ? ? 1.986 ? disulf3 disulf ? ? A CYS 33 SG ? ? ? 1_555 A CYS 55 SG ? ? A CYS 33 A CYS 55 1_555 ? ? ? ? ? ? ? 2.126 ? disulf4 disulf ? ? A CYS 65 SG ? ? ? 1_555 A CYS 97 SG ? ? A CYS 65 A CYS 97 1_555 ? ? ? ? ? ? ? 2.001 ? disulf5 disulf ? ? A CYS 75 SG ? ? ? 1_555 A CYS 107 SG ? ? A CYS 75 A CYS 107 1_555 ? ? ? ? ? ? ? 2.139 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLY A 34 ? CYS A 42 ? GLY A 34 CYS A 42 A 2 GLN A 45 ? VAL A 53 ? GLN A 45 VAL A 53 B 1 TYR A 67 ? LYS A 68 ? TYR A 67 LYS A 68 B 2 LYS A 82 ? LEU A 88 ? LYS A 82 LEU A 88 B 3 THR A 100 ? LYS A 105 ? THR A 100 LYS A 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 40 ? N GLY A 40 O ARG A 47 ? O ARG A 47 B 1 2 N LYS A 68 ? N LYS A 68 O THR A 87 ? O THR A 87 B 2 3 N GLY A 86 ? N GLY A 86 O VAL A 101 ? O VAL A 101 # _atom_sites.entry_id 2LUT _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 ASN 4 4 4 ASN ASN A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 LYS 10 10 10 LYS LYS A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 CYS 18 18 18 CYS CYS A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 TRP 21 21 21 TRP TRP A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 CYS 33 33 33 CYS CYS A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 MET 37 37 37 MET MET A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 CYS 42 42 42 CYS CYS A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 ARG 47 47 47 ARG ARG A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 CYS 51 51 51 CYS CYS A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 PRO 54 54 54 PRO PRO A . n A 1 55 CYS 55 55 55 CYS CYS A . n A 1 56 ASN 56 56 56 ASN ASN A . n A 1 57 TRP 57 57 57 TRP TRP A . n A 1 58 LYS 58 58 58 LYS LYS A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 CYS 65 65 65 CYS CYS A . n A 1 66 LYS 66 66 66 LYS LYS A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 GLY 70 70 70 GLY GLY A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 TRP 72 72 72 TRP TRP A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 CYS 75 75 75 CYS CYS A . n A 1 76 ASP 76 76 76 ASP ASP A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 SER 80 80 80 SER SER A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 THR 87 87 87 THR THR A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 GLN 89 89 89 GLN GLN A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 ASN 94 94 94 ASN ASN A . n A 1 95 VAL 95 95 95 VAL VAL A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 CYS 97 97 97 CYS CYS A . n A 1 98 GLN 98 98 98 GLN GLN A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 VAL 103 103 103 VAL VAL A . n A 1 104 THR 104 104 104 THR THR A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 LYS 112 112 112 LYS LYS A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 LYS 121 121 121 LYS LYS A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 LYS 123 123 123 LYS LYS A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 ASN 125 125 125 ASN ASN A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'sodium phosphate-1' 10 ? mM ? 1 'sodium azide-2' 0.1 ? mM ? 1 'sodium chloride-3' 100 ? mM ? 1 EDTA-4 1 ? mM ? 1 entity-5 0.8 ? mM '[U-100% 13C; U-100% 15N]' 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2LUT _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 5 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1869 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 763 _pdbx_nmr_constraints.NOE_long_range_total_count 389 _pdbx_nmr_constraints.NOE_medium_range_total_count 124 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 593 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 54 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 54 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 6 ? ? -171.12 102.79 2 1 ASN A 9 ? ? -176.75 64.20 3 1 ALA A 16 ? ? 63.30 169.11 4 1 ALA A 19 ? ? 64.88 110.77 5 1 GLU A 20 ? ? 58.98 77.91 6 1 ASN A 43 ? ? 68.55 -76.67 7 1 GLU A 44 ? ? -156.54 28.25 8 1 VAL A 53 ? ? -112.71 76.07 9 1 ASN A 56 ? ? 178.92 34.83 10 1 GLU A 60 ? ? -168.37 -74.63 11 1 PHE A 61 ? ? -172.63 -179.11 12 1 ASP A 64 ? ? -156.49 -69.56 13 1 GLN A 89 ? ? -79.20 -74.96 14 1 PRO A 106 ? ? -69.75 74.76 15 1 THR A 109 ? ? -176.03 146.33 16 1 VAL A 111 ? ? 51.71 88.80 17 2 SER A 2 ? ? -161.23 -60.86 18 2 LYS A 3 ? ? 60.36 83.33 19 2 GLU A 7 ? ? -179.05 146.94 20 2 LYS A 8 ? ? -178.03 -179.40 21 2 LYS A 10 ? ? -162.43 -62.32 22 2 ALA A 16 ? ? 68.90 -77.42 23 2 ASN A 30 ? ? -156.54 34.63 24 2 ASP A 32 ? ? -135.47 -54.85 25 2 ASN A 43 ? ? 64.58 -82.86 26 2 GLU A 44 ? ? -144.82 31.95 27 2 ASN A 56 ? ? 63.80 62.25 28 2 LYS A 58 ? ? -56.03 177.09 29 2 LYS A 59 ? ? -172.89 -173.72 30 2 GLU A 60 ? ? 63.22 -169.93 31 2 PHE A 61 ? ? 63.15 104.11 32 2 ALA A 63 ? ? 69.10 -77.13 33 2 ASP A 64 ? ? -174.52 -70.66 34 2 ASN A 71 ? ? -163.72 30.44 35 2 TRP A 72 ? ? 65.94 121.82 36 2 GLN A 89 ? ? -112.31 -74.42 37 2 LEU A 92 ? ? -140.94 16.27 38 2 PHE A 93 ? ? -89.08 -74.80 39 2 ASN A 94 ? ? -179.44 -48.72 40 2 PRO A 106 ? ? -69.74 71.65 41 2 LYS A 121 ? ? 57.89 93.61 42 3 GLU A 7 ? ? -174.94 121.89 43 3 LYS A 10 ? ? -170.30 145.98 44 3 ALA A 16 ? ? -124.62 -169.85 45 3 ASN A 30 ? ? -55.11 -72.81 46 3 ASN A 43 ? ? 63.58 -85.59 47 3 ALA A 63 ? ? -53.02 -70.58 48 3 ASP A 64 ? ? -107.96 -73.09 49 3 ASN A 71 ? ? -174.52 124.94 50 3 PHE A 93 ? ? 58.21 176.76 51 3 VAL A 95 ? ? -175.69 139.70 52 3 PRO A 106 ? ? -69.75 78.79 53 3 LYS A 112 ? ? -149.05 32.12 54 3 LYS A 121 ? ? 69.12 -75.56 55 4 LYS A 6 ? ? -163.64 113.06 56 4 LYS A 8 ? ? -172.33 133.81 57 4 ASP A 17 ? ? 62.26 162.29 58 4 ALA A 19 ? ? -51.62 -75.76 59 4 ASN A 43 ? ? 63.37 -82.39 60 4 GLU A 44 ? ? -144.43 41.21 61 4 VAL A 53 ? ? -113.18 75.88 62 4 ASN A 56 ? ? 60.52 80.43 63 4 LYS A 58 ? ? 58.76 177.54 64 4 ASP A 64 ? ? -123.80 -56.34 65 4 ASN A 71 ? ? 66.23 147.35 66 4 GLN A 89 ? ? -113.34 -74.73 67 4 PHE A 93 ? ? -152.00 20.24 68 4 ASN A 94 ? ? 51.44 70.37 69 4 LYS A 116 ? ? -151.80 84.82 70 4 LYS A 119 ? ? -164.77 29.18 71 4 LYS A 121 ? ? 61.75 -177.87 72 5 SER A 2 ? ? 62.59 165.56 73 5 GLU A 20 ? ? -176.74 60.62 74 5 ASP A 32 ? ? -148.43 -42.52 75 5 ASN A 43 ? ? 64.62 -79.08 76 5 GLU A 44 ? ? -149.57 30.66 77 5 ASN A 56 ? ? 179.88 -41.15 78 5 LYS A 59 ? ? 63.32 171.03 79 5 GLN A 89 ? ? -96.22 -75.75 80 5 ASN A 94 ? ? -56.28 100.76 81 5 VAL A 95 ? ? -175.44 149.54 82 5 PRO A 106 ? ? -69.77 75.28 83 5 VAL A 111 ? ? 51.30 81.10 84 6 SER A 2 ? ? -173.14 119.47 85 6 LYS A 5 ? ? -156.27 86.47 86 6 ALA A 16 ? ? -142.06 53.79 87 6 ASP A 17 ? ? 64.56 154.43 88 6 ASP A 32 ? ? -145.25 -74.81 89 6 ASN A 43 ? ? 65.98 -82.75 90 6 GLU A 44 ? ? -145.68 41.93 91 6 LYS A 58 ? ? -106.62 59.56 92 6 PHE A 61 ? ? -163.19 105.30 93 6 ALA A 63 ? ? -165.75 -52.90 94 6 ASP A 64 ? ? -129.58 -58.77 95 6 ASN A 71 ? ? 65.30 116.27 96 6 GLN A 89 ? ? -95.43 -73.51 97 6 PHE A 93 ? ? -179.21 142.28 98 6 ASN A 94 ? ? -54.16 101.91 99 6 VAL A 95 ? ? -175.30 138.61 100 6 PRO A 106 ? ? -69.68 73.34 101 6 LYS A 110 ? ? -118.86 -169.77 102 6 LYS A 112 ? ? -140.54 38.19 103 6 LYS A 118 ? ? -166.83 -56.87 104 6 LYS A 123 ? ? 62.22 170.61 105 7 ASN A 4 ? ? -113.15 73.33 106 7 LYS A 8 ? ? -176.50 100.85 107 7 ALA A 16 ? ? -163.35 63.47 108 7 ASP A 17 ? ? -169.85 108.58 109 7 ASN A 30 ? ? 179.71 -34.31 110 7 ASN A 43 ? ? 64.48 -80.06 111 7 GLU A 44 ? ? -147.29 28.37 112 7 VAL A 53 ? ? -112.89 71.90 113 7 ASN A 56 ? ? 178.79 -34.04 114 7 LYS A 58 ? ? -176.93 -55.61 115 7 ASP A 64 ? ? -103.37 -61.72 116 7 ASN A 71 ? ? -176.42 38.05 117 7 TRP A 72 ? ? 65.26 149.27 118 7 GLN A 89 ? ? -93.83 -75.59 119 7 LEU A 92 ? ? -98.05 50.95 120 7 ASN A 94 ? ? -109.54 61.70 121 7 VAL A 95 ? ? 64.88 153.87 122 7 PRO A 106 ? ? -69.83 74.31 123 7 LYS A 110 ? ? -174.26 148.05 124 7 LYS A 121 ? ? 69.05 -75.64 125 8 LYS A 3 ? ? -133.25 -58.05 126 8 LYS A 5 ? ? -158.33 -63.23 127 8 LYS A 8 ? ? -165.42 102.46 128 8 ASP A 17 ? ? -145.82 -74.93 129 8 GLU A 20 ? ? -177.28 67.24 130 8 ASP A 32 ? ? -148.73 -75.49 131 8 ASN A 43 ? ? 61.59 -83.13 132 8 GLU A 44 ? ? -140.65 26.37 133 8 VAL A 53 ? ? -111.65 78.68 134 8 TRP A 57 ? ? 51.62 82.07 135 8 ALA A 63 ? ? -165.22 -48.24 136 8 ASN A 71 ? ? 179.94 124.41 137 8 GLN A 89 ? ? -174.56 -36.78 138 8 LEU A 92 ? ? -148.44 26.23 139 8 PHE A 93 ? ? -177.19 149.33 140 8 VAL A 95 ? ? -174.22 135.66 141 8 LYS A 110 ? ? 64.64 155.15 142 9 ASN A 9 ? ? 62.17 99.01 143 9 ALA A 19 ? ? 64.06 156.24 144 9 GLU A 20 ? ? 36.78 50.37 145 9 ASN A 29 ? ? -52.05 -74.19 146 9 ASN A 30 ? ? -152.14 80.57 147 9 ASP A 32 ? ? -150.35 -42.24 148 9 ASN A 43 ? ? 68.89 -75.20 149 9 GLU A 44 ? ? -155.84 23.47 150 9 ASN A 56 ? ? 175.20 -77.52 151 9 TRP A 57 ? ? 62.39 -84.02 152 9 ASP A 64 ? ? 69.33 -75.79 153 9 ASN A 71 ? ? 56.05 -176.68 154 9 LEU A 92 ? ? -95.57 35.27 155 9 PHE A 93 ? ? 52.08 -169.56 156 9 ASN A 94 ? ? 72.47 -69.26 157 9 PRO A 106 ? ? -69.71 73.54 158 9 THR A 109 ? ? -161.40 115.97 159 9 VAL A 111 ? ? 51.48 81.74 160 9 ASN A 113 ? ? -158.19 84.77 161 9 LYS A 118 ? ? -125.15 -53.96 162 9 LYS A 119 ? ? -161.11 58.68 163 9 LYS A 123 ? ? 61.38 177.66 164 10 ASN A 4 ? ? -132.21 -65.25 165 10 LYS A 5 ? ? 59.73 174.91 166 10 LYS A 6 ? ? -166.45 -39.79 167 10 GLU A 7 ? ? 59.30 -173.39 168 10 ASN A 9 ? ? -172.42 95.19 169 10 ASP A 17 ? ? 62.28 161.24 170 10 GLU A 20 ? ? -176.69 58.90 171 10 ASN A 30 ? ? -159.01 -40.77 172 10 ASN A 43 ? ? 63.95 -82.90 173 10 GLU A 44 ? ? -142.75 29.78 174 10 VAL A 53 ? ? -114.24 70.75 175 10 ASN A 56 ? ? 64.80 62.82 176 10 LYS A 58 ? ? -165.59 32.04 177 10 LYS A 59 ? ? -179.21 141.73 178 10 GLU A 60 ? ? -176.92 136.70 179 10 PHE A 61 ? ? -123.18 -68.86 180 10 ASP A 64 ? ? 51.61 -168.96 181 10 ASN A 71 ? ? 66.82 127.57 182 10 GLN A 89 ? ? -174.68 -36.63 183 10 ASN A 94 ? ? -54.82 106.23 184 10 VAL A 111 ? ? 51.58 81.69 185 10 LYS A 112 ? ? -69.18 -71.68 186 10 PRO A 115 ? ? -69.72 -86.19 187 10 LYS A 116 ? ? 52.04 -169.73 188 10 LYS A 121 ? ? -58.64 103.05 #