HEADER DNA BINDING PROTEIN 22-JUN-12 2LUY TITLE SOLUTION STRUCTURE OF THE TANDEM ZINC FINGER DOMAIN OF FISSION YEAST TITLE 2 STC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEIOTIC CHROMOSOME SEGREGATION PROTEIN P8B7.28C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TANDEM ZINC FINGER DOMAIN, UNP RESIDUES 32-126; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 STRAIN: 972 / ATCC 24843; SOURCE 6 GENE: SPBP8B7.28C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS TANDEM ZINC FINGERS, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.HE,Y.SHI,E.BAYNE,J.WU REVDAT 3 01-MAY-24 2LUY 1 REMARK SEQADV LINK REVDAT 2 12-JUN-13 2LUY 1 JRNL REVDAT 1 08-MAY-13 2LUY 0 JRNL AUTH C.HE,S.S.PILLAI,F.TAGLINI,F.LI,K.RUAN,J.ZHANG,J.WU,Y.SHI, JRNL AUTH 2 E.H.BAYNE JRNL TITL STRUCTURAL ANALYSIS OF STC1 PROVIDES INSIGHTS INTO THE JRNL TITL 2 COUPLING OF RNAI AND CHROMATIN MODIFICATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 E1879 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23613586 JRNL DOI 10.1073/PNAS.1212155110 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LUY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-12. REMARK 100 THE DEPOSITION ID IS D_1000102865. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 200 MM SODIUM CHLORIDE, 20 MM REMARK 210 BIS-TRIS, 0.8 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN, 1.6 MM ZINC REMARK 210 ION, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D HBHA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D C(CO)NH; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HCCH-TOCSY; 3D HCCH-COSY; 2D REMARK 210 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, TALOS, MOLMOL, REMARK 210 PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 30 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 34 -0.49 -164.35 REMARK 500 1 ILE A 51 -6.60 -54.25 REMARK 500 1 ARG A 67 26.52 46.45 REMARK 500 1 ARG A 125 3.34 58.34 REMARK 500 2 MET A 43 -4.39 -54.03 REMARK 500 2 ARG A 44 -85.23 -112.84 REMARK 500 2 ILE A 51 -15.01 -49.40 REMARK 500 2 ARG A 67 18.78 53.21 REMARK 500 2 SER A 74 6.62 -65.89 REMARK 500 2 PRO A 85 108.07 -59.89 REMARK 500 2 GLN A 118 -9.66 -55.99 REMARK 500 2 SER A 123 -70.59 -87.02 REMARK 500 2 GLN A 124 37.74 -140.19 REMARK 500 2 ARG A 125 -96.77 44.57 REMARK 500 3 ASP A 37 5.62 -64.40 REMARK 500 3 MET A 43 1.43 -69.07 REMARK 500 3 ARG A 44 -87.91 -111.35 REMARK 500 3 ARG A 46 35.24 39.39 REMARK 500 3 ILE A 51 -6.02 -52.04 REMARK 500 3 GLN A 84 76.01 -116.68 REMARK 500 3 PRO A 85 26.99 -73.49 REMARK 500 3 GLN A 97 35.20 81.88 REMARK 500 3 CYS A 117 154.76 -41.61 REMARK 500 3 GLN A 124 22.67 -141.84 REMARK 500 3 ARG A 125 -94.19 48.61 REMARK 500 4 ASN A 34 81.20 -150.63 REMARK 500 4 ARG A 44 -76.64 -118.67 REMARK 500 4 ARG A 46 41.77 38.67 REMARK 500 4 ASP A 75 63.97 -150.13 REMARK 500 4 LEU A 113 36.15 -89.00 REMARK 500 4 ASP A 114 59.39 -163.33 REMARK 500 4 CYS A 117 150.23 -42.87 REMARK 500 4 GLN A 118 -9.58 -53.93 REMARK 500 4 SER A 123 -65.49 -106.84 REMARK 500 4 ARG A 125 -169.31 54.59 REMARK 500 5 ILE A 51 -4.38 -54.28 REMARK 500 5 GLN A 84 150.42 -45.16 REMARK 500 5 PRO A 85 161.35 -42.98 REMARK 500 5 GLN A 87 -22.45 -146.28 REMARK 500 5 ARG A 110 -5.53 -56.56 REMARK 500 5 GLN A 124 40.44 -90.78 REMARK 500 6 ASP A 37 8.66 -69.36 REMARK 500 6 ARG A 44 -84.40 -109.62 REMARK 500 6 ILE A 51 -5.85 -56.18 REMARK 500 6 ARG A 67 26.53 42.88 REMARK 500 6 LYS A 86 -70.07 -154.33 REMARK 500 6 GLN A 87 -74.81 -69.29 REMARK 500 6 HIS A 88 73.42 -174.25 REMARK 500 6 GLN A 97 31.86 75.09 REMARK 500 6 GLN A 118 -9.15 -54.29 REMARK 500 REMARK 500 THIS ENTRY HAS 181 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 42 SG REMARK 620 2 CYS A 45 SG 109.5 REMARK 620 3 CYS A 80 SG 92.8 104.6 REMARK 620 4 CYS A 83 SG 123.8 112.3 110.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 93 SG REMARK 620 2 CYS A 96 SG 108.9 REMARK 620 3 CYS A 117 SG 91.2 111.5 REMARK 620 4 CYS A 120 SG 126.6 108.8 108.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18546 RELATED DB: BMRB DBREF 2LUY A 32 126 UNP O94276 YORS_SCHPO 32 126 SEQADV 2LUY HIS A 30 UNP O94276 EXPRESSION TAG SEQADV 2LUY MET A 31 UNP O94276 EXPRESSION TAG SEQADV 2LUY ALA A 38 UNP O94276 CYS 38 ENGINEERED MUTATION SEQRES 1 A 97 HIS MET GLY LYS ASN ASP ASN ASP ALA LEU ILE MET CYS SEQRES 2 A 97 MET ARG CYS ARG LYS VAL LYS GLY ILE ASP SER TYR SER SEQRES 3 A 97 LYS THR GLN TRP SER LYS THR PHE THR PHE VAL ARG GLY SEQRES 4 A 97 ARG THR VAL SER VAL SER ASP PRO LYS VAL ILE CYS ARG SEQRES 5 A 97 THR CYS GLN PRO LYS GLN HIS ASP SER ILE TRP CYS THR SEQRES 6 A 97 ALA CYS GLN GLN THR LYS GLY ILE ASN GLU PHE SER LYS SEQRES 7 A 97 ALA GLN ARG HIS VAL LEU ASP PRO ARG CYS GLN ILE CYS SEQRES 8 A 97 VAL HIS SER GLN ARG ASN HET ZN A 300 1 HET ZN A 301 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 ASN A 34 ASP A 37 5 4 HELIX 2 2 SER A 55 LYS A 61 1 7 HELIX 3 3 SER A 106 VAL A 112 1 7 HELIX 4 4 CYS A 117 HIS A 122 1 6 SHEET 1 A 2 LEU A 39 MET A 41 0 SHEET 2 A 2 VAL A 48 GLY A 50 -1 O LYS A 49 N ILE A 40 SHEET 1 B 2 PHE A 63 VAL A 66 0 SHEET 2 B 2 ARG A 69 SER A 72 -1 O VAL A 71 N THR A 64 SHEET 1 C 2 SER A 90 TRP A 92 0 SHEET 2 C 2 THR A 99 GLY A 101 -1 O LYS A 100 N ILE A 91 LINK SG CYS A 42 ZN ZN A 300 1555 1555 2.30 LINK SG CYS A 45 ZN ZN A 300 1555 1555 2.30 LINK SG CYS A 80 ZN ZN A 300 1555 1555 2.27 LINK SG CYS A 83 ZN ZN A 300 1555 1555 2.33 LINK SG CYS A 93 ZN ZN A 301 1555 1555 2.30 LINK SG CYS A 96 ZN ZN A 301 1555 1555 2.30 LINK SG CYS A 117 ZN ZN A 301 1555 1555 2.28 LINK SG CYS A 120 ZN ZN A 301 1555 1555 2.33 SITE 1 AC1 5 CYS A 42 ARG A 44 CYS A 45 CYS A 80 SITE 2 AC1 5 CYS A 83 SITE 1 AC2 5 CYS A 93 ALA A 95 CYS A 96 CYS A 117 SITE 2 AC2 5 CYS A 120 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1