HEADER DE NOVO PROTEIN 29-JUN-12 2LV8 TITLE SOLUTION NMR STRUCTURE DE NOVO DESIGNED ROSSMANN 2X2 FOLD PROTEIN, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED ROSSMANN 2X2 FOLD PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET29B+ KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,R.KOGA,N.KOGA,R.XIAO,K.PEDERSON,K.HAMILTON,C.CICCOSANTI, AUTHOR 2 T.B.ACTON,J.K.EVERETT,D.BAKER,G.T.MONTELIONE,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 6 15-MAY-24 2LV8 1 REMARK REVDAT 5 14-JUN-23 2LV8 1 REMARK REVDAT 4 23-JAN-13 2LV8 1 JRNL REVDAT 3 07-NOV-12 2LV8 1 JRNL REVDAT 2 31-OCT-12 2LV8 1 JRNL REVDAT 1 08-AUG-12 2LV8 0 JRNL AUTH N.KOGA,R.TATSUMI-KOGA,G.LIU,R.XIAO,T.B.ACTON,G.T.MONTELIONE, JRNL AUTH 2 D.BAKER JRNL TITL PRINCIPLES FOR DESIGNING IDEAL PROTEIN STRUCTURES. JRNL REF NATURE V. 491 222 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 23135467 JRNL DOI 10.1038/NATURE11600 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1, PSVS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), BHATTACHARYA, MONTELIONE (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000102875. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.073 MM [U-100% 13C; U-100% REMARK 210 15N] OR16.004, 1 X PROTEINASE REMARK 210 INHIBITORS, 0.02 % NAN3, 10 MM REMARK 210 DTT, 5 MM CACL2, 200 MM NACL, 20 REMARK 210 MM MES PH 6.5, 10 % D2O, 50 UM REMARK 210 DSS, 90% H2O/10% D2O; 0.867 MM REMARK 210 [U-100% 13C; U-100% 15N] REMARK 210 OR16.006, 1 X PROTEINASE REMARK 210 INHIBITORS, 0.02 % NAN3, 10 MM REMARK 210 DTT, 5 MM CACL2, 200 MM NACL, 20 REMARK 210 MM MES PH 6.5, 10 % D2O, 50 UM REMARK 210 DSS, 90% H2O/10% D2O; 0.859 MM REMARK 210 [U-100% 13C; U-100% 15N] REMARK 210 OR16.013, 1 X PROTEINASE REMARK 210 INHIBITORS, 0.02 % NAN3, 10 MM REMARK 210 DTT, 5 MM CACL2, 200 MM NACL, 20 REMARK 210 MM MES PH 6.5, 10 % D2O, 50 UM REMARK 210 DSS, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 3D C(CO)NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ, SPARKY, REMARK 210 TALOS+, PALES, REDCAT, PSVS REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE REMARK 210 DYNAMICS, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 33 -73.18 -95.67 REMARK 500 1 SER A 102 -164.92 -76.03 REMARK 500 1 LEU A 103 -71.76 -61.91 REMARK 500 2 SER A 49 85.08 -69.02 REMARK 500 2 GLN A 50 86.89 -158.40 REMARK 500 2 HIS A 106 81.70 -65.57 REMARK 500 3 SER A 49 0.08 -67.46 REMARK 500 3 GLN A 50 87.46 -54.81 REMARK 500 3 HIS A 107 41.01 -87.93 REMARK 500 3 HIS A 109 33.42 -158.60 REMARK 500 4 SER A 49 45.51 -78.50 REMARK 500 4 ASN A 51 77.26 60.08 REMARK 500 4 HIS A 106 98.32 -62.87 REMARK 500 4 HIS A 107 92.17 -69.41 REMARK 500 4 HIS A 109 86.88 -65.23 REMARK 500 5 GLN A 50 89.18 -58.64 REMARK 500 5 ASN A 51 76.75 55.42 REMARK 500 5 SER A 102 117.66 59.92 REMARK 500 5 HIS A 105 45.93 -152.06 REMARK 500 5 HIS A 106 96.67 -66.86 REMARK 500 6 LYS A 33 -63.20 -109.48 REMARK 500 6 GLN A 50 96.47 -60.84 REMARK 500 6 THR A 84 -53.09 -129.45 REMARK 500 6 LEU A 103 50.82 -95.69 REMARK 500 6 HIS A 106 85.98 -68.13 REMARK 500 7 ASP A 11 99.49 -69.14 REMARK 500 7 LYS A 33 -62.30 -103.88 REMARK 500 7 SER A 102 -26.41 78.05 REMARK 500 8 LYS A 33 -67.01 -107.83 REMARK 500 8 GLU A 75 14.00 59.53 REMARK 500 8 THR A 84 -60.61 -92.38 REMARK 500 8 LEU A 103 -34.87 -164.10 REMARK 500 8 HIS A 108 -169.54 -108.45 REMARK 500 9 ASN A 26 -2.22 72.17 REMARK 500 9 LEU A 103 -55.91 75.22 REMARK 500 10 LYS A 33 -59.54 -122.48 REMARK 500 10 SER A 49 83.78 -68.55 REMARK 500 10 HIS A 106 90.19 -68.92 REMARK 500 11 HIS A 105 13.74 -149.98 REMARK 500 11 HIS A 109 44.29 -88.66 REMARK 500 12 SER A 49 0.70 -68.43 REMARK 500 12 GLU A 75 19.70 55.96 REMARK 500 12 SER A 102 37.51 -86.70 REMARK 500 12 HIS A 108 99.03 -177.35 REMARK 500 13 HIS A 109 97.96 -69.65 REMARK 500 14 ASN A 26 71.84 57.16 REMARK 500 14 LYS A 33 -73.39 -107.76 REMARK 500 14 SER A 102 -47.10 75.37 REMARK 500 14 GLU A 104 34.10 -92.32 REMARK 500 15 GLN A 50 95.61 -60.94 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KPO RELATED DB: PDB REMARK 900 NMR STRUCTURE REFINED WITHOUT RDC DATA REMARK 900 RELATED ID: 16562 RELATED DB: BMRB REMARK 900 NMR DATA EXCLUDED RDC REMARK 900 RELATED ID: 18558 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-OR16 RELATED DB: TARGETTRACK DBREF 2LV8 A 1 110 PDB 2LV8 2LV8 1 110 SEQRES 1 A 110 MET LEU LEU TYR VAL LEU ILE ILE SER ASN ASP LYS LYS SEQRES 2 A 110 LEU ILE GLU GLU ALA ARG LYS MET ALA GLU LYS ALA ASN SEQRES 3 A 110 LEU GLU LEU ARG THR VAL LYS THR GLU ASP GLU LEU LYS SEQRES 4 A 110 LYS TYR LEU GLU GLU PHE ARG LYS GLU SER GLN ASN ILE SEQRES 5 A 110 LYS VAL LEU ILE LEU VAL SER ASN ASP GLU GLU LEU ASP SEQRES 6 A 110 LYS ALA LYS GLU LEU ALA GLN LYS MET GLU ILE ASP VAL SEQRES 7 A 110 ARG THR ARG LYS VAL THR SER PRO ASP GLU ALA LYS ARG SEQRES 8 A 110 TRP ILE LYS GLU PHE SER GLU GLU GLY GLY SER LEU GLU SEQRES 9 A 110 HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 11 ASN A 26 1 16 HELIX 2 2 THR A 34 LYS A 47 1 14 HELIX 3 3 ASN A 60 MET A 74 1 15 HELIX 4 4 SER A 85 GLU A 99 1 15 SHEET 1 A 4 GLU A 28 VAL A 32 0 SHEET 2 A 4 LEU A 2 ILE A 8 1 N VAL A 5 O GLU A 28 SHEET 3 A 4 ILE A 52 VAL A 58 1 O LYS A 53 N TYR A 4 SHEET 4 A 4 VAL A 78 LYS A 82 1 O ARG A 81 N ILE A 56 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1