HEADER HYDROLASE 29-JUN-12 2LVA TITLE NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN USP28, TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HT8470A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 28; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UIM DOMAIN RESIDUES 22-132; COMPND 5 SYNONYM: DEUBIQUITINATING ENZYME 28, UBIQUITIN THIOESTERASE 28, COMPND 6 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 28; COMPND 7 EC: 3.4.19.12; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP28, KIAA1515; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28-MHL KEYWDS UIM, UBIQUITIN INTERACTING MOTIF, UBA DOMAIN, NESG, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 3 PSI-BIOLOGY, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.LEMAK,A.YEE,S.HOULISTON,M.GARCIA,S.DHE-PAGANON,G.T.MONTELIONE, AUTHOR 2 C.ARROWSMITH,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 15-MAY-24 2LVA 1 REMARK REVDAT 2 14-JUN-23 2LVA 1 REMARK SEQADV REVDAT 1 18-JUL-12 2LVA 0 JRNL AUTH A.LEMAK,A.YEE,S.HOULISTON,M.GARCIA,S.DHE-PAGANON, JRNL AUTH 2 G.T.MONTELIONE,C.ARROWSMITH JRNL TITL NMR SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF HUMAN JRNL TITL 2 USP28 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000102877. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 450 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N] PROTEIN, REMARK 210 10 MM MOPS, 450 MM SODIUM REMARK 210 CHLORIDE, 10 UM ZNSO4, 1 MM DTT, REMARK 210 0.01 % NAN3, 1 MM BENZAMIDINE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCO; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, FMC, TALOS, PSVS, CYANA REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 GLU A 15 REMARK 465 ASN A 16 REMARK 465 LEU A 17 REMARK 465 TYR A 18 REMARK 465 PHE A 19 REMARK 465 GLN A 20 REMARK 465 GLY A 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 69 92.79 -62.70 REMARK 500 1 ASP A 97 29.09 42.77 REMARK 500 1 ALA A 118 81.99 -157.60 REMARK 500 1 ASP A 119 -71.63 65.17 REMARK 500 1 LEU A 123 37.13 -86.24 REMARK 500 2 ALA A 82 39.70 -140.27 REMARK 500 2 LEU A 88 41.88 -88.21 REMARK 500 2 ILE A 92 75.84 -116.41 REMARK 500 2 THR A 95 93.46 -64.25 REMARK 500 2 GLU A 112 -164.62 -73.88 REMARK 500 2 ASP A 119 92.92 60.60 REMARK 500 2 ARG A 121 142.28 74.42 REMARK 500 2 ARG A 125 24.86 -142.54 REMARK 500 2 THR A 130 96.30 -63.34 REMARK 500 3 ASN A 84 -63.99 -99.02 REMARK 500 3 LYS A 85 86.37 58.95 REMARK 500 3 GLU A 86 48.99 -103.24 REMARK 500 3 ASP A 119 -85.25 63.89 REMARK 500 3 LEU A 123 -76.08 59.38 REMARK 500 3 ASN A 124 -72.37 25.41 REMARK 500 3 ALA A 129 79.44 -104.94 REMARK 500 4 LYS A 64 93.24 -64.90 REMARK 500 4 LYS A 85 110.15 -164.61 REMARK 500 4 ASP A 93 94.85 -65.68 REMARK 500 4 LEU A 94 -29.78 74.13 REMARK 500 4 ILE A 116 60.72 -117.24 REMARK 500 4 LEU A 123 78.43 67.24 REMARK 500 4 ALA A 129 122.35 -172.09 REMARK 500 5 LYS A 64 102.64 -166.16 REMARK 500 5 PRO A 75 -168.70 -74.00 REMARK 500 5 SER A 76 93.13 -69.82 REMARK 500 5 ILE A 92 70.55 50.06 REMARK 500 5 LEU A 94 46.34 -87.49 REMARK 500 5 ASP A 101 -70.51 -54.38 REMARK 500 5 ARG A 121 37.74 -83.57 REMARK 500 5 GLU A 128 105.56 -162.77 REMARK 500 6 LYS A 64 89.46 -61.09 REMARK 500 6 PRO A 75 106.99 -47.10 REMARK 500 6 ALA A 83 38.40 -97.26 REMARK 500 6 LEU A 94 39.96 -148.26 REMARK 500 6 ALA A 118 72.38 -152.65 REMARK 500 7 SER A 67 -87.37 -100.25 REMARK 500 7 GLU A 77 87.83 -69.52 REMARK 500 7 SER A 81 90.23 -66.49 REMARK 500 7 ASN A 84 37.44 -90.66 REMARK 500 7 LEU A 94 16.76 -144.23 REMARK 500 7 THR A 95 -167.12 -78.22 REMARK 500 7 ALA A 118 14.38 -148.50 REMARK 500 7 THR A 130 97.23 -52.99 REMARK 500 8 ALA A 72 38.06 -83.48 REMARK 500 REMARK 500 THIS ENTRY HAS 171 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18560 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-HT8470A RELATED DB: TARGETTRACK DBREF 2LVA A 22 132 UNP Q96RU2 UBP28_HUMAN 22 132 SEQADV 2LVA MET A 4 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA HIS A 5 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA HIS A 6 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA HIS A 7 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA HIS A 8 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA HIS A 9 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA HIS A 10 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA SER A 11 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA SER A 12 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA GLY A 13 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA ARG A 14 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA GLU A 15 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA ASN A 16 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA LEU A 17 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA TYR A 18 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA PHE A 19 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA GLN A 20 UNP Q96RU2 EXPRESSION TAG SEQADV 2LVA GLY A 21 UNP Q96RU2 EXPRESSION TAG SEQRES 1 A 129 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 129 LEU TYR PHE GLN GLY GLN MET LEU LEU ASN GLN LEU ARG SEQRES 3 A 129 GLU ILE THR GLY ILE GLN ASP PRO SER PHE LEU HIS GLU SEQRES 4 A 129 ALA LEU LYS ALA SER ASN GLY ASP ILE THR GLN ALA VAL SEQRES 5 A 129 SER LEU LEU THR ASP GLU ARG VAL LYS GLU PRO SER GLN SEQRES 6 A 129 ASP THR VAL ALA THR GLU PRO SER GLU VAL GLU GLY SER SEQRES 7 A 129 ALA ALA ASN LYS GLU VAL LEU ALA LYS VAL ILE ASP LEU SEQRES 8 A 129 THR HIS ASP ASN LYS ASP ASP LEU GLN ALA ALA ILE ALA SEQRES 9 A 129 LEU SER LEU LEU GLU SER PRO LYS ILE GLN ALA ASP GLY SEQRES 10 A 129 ARG ASP LEU ASN ARG MET HIS GLU ALA THR SER ALA HELIX 1 1 GLN A 22 GLY A 33 1 12 HELIX 2 2 ASP A 36 SER A 47 1 12 HELIX 3 3 ASP A 50 THR A 59 1 10 HELIX 4 4 THR A 59 LYS A 64 1 6 HELIX 5 5 LYS A 99 GLU A 112 1 14 HELIX 6 6 GLY A 120 ASN A 124 5 5 CISPEP 1 GLU A 65 PRO A 66 1 3.12 CISPEP 2 GLU A 65 PRO A 66 2 0.00 CISPEP 3 GLU A 65 PRO A 66 3 4.41 CISPEP 4 GLU A 65 PRO A 66 4 -1.42 CISPEP 5 GLU A 65 PRO A 66 5 -5.02 CISPEP 6 GLU A 65 PRO A 66 6 3.50 CISPEP 7 GLU A 65 PRO A 66 7 -1.61 CISPEP 8 GLU A 65 PRO A 66 8 -6.56 CISPEP 9 GLU A 65 PRO A 66 9 3.70 CISPEP 10 GLU A 65 PRO A 66 10 -3.52 CISPEP 11 GLU A 65 PRO A 66 11 0.59 CISPEP 12 GLU A 65 PRO A 66 12 2.06 CISPEP 13 GLU A 65 PRO A 66 13 3.72 CISPEP 14 GLU A 65 PRO A 66 14 -2.46 CISPEP 15 GLU A 65 PRO A 66 15 6.58 CISPEP 16 GLU A 65 PRO A 66 16 2.11 CISPEP 17 GLU A 65 PRO A 66 17 -6.17 CISPEP 18 GLU A 65 PRO A 66 18 -4.90 CISPEP 19 GLU A 65 PRO A 66 19 5.26 CISPEP 20 GLU A 65 PRO A 66 20 -5.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1