HEADER DE NOVO PROTEIN 30-JUN-12 2LVB TITLE SOLUTION NMR STRUCTURE DE NOVO DESIGNED PFK FOLD PROTEIN, NORTHEAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET OR250 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DE NOVO DESIGNED PFK FOLD PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET29B+ KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, DE NOVO PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.LIU,N.KOGA,R.KOGA,R.XIAO,K.HAMILTON,E.KOHAN,T.B.ACTON,G.KORNHABER, AUTHOR 2 J.K.EVERETT,D.BAKER,G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 5 14-JUN-23 2LVB 1 REMARK REVDAT 4 23-JAN-13 2LVB 1 JRNL REVDAT 3 07-NOV-12 2LVB 1 JRNL REVDAT 2 31-OCT-12 2LVB 1 JRNL REVDAT 1 08-AUG-12 2LVB 0 JRNL AUTH N.KOGA,R.TATSUMI-KOGA,G.LIU,R.XIAO,T.B.ACTON,G.T.MONTELIONE, JRNL AUTH 2 D.BAKER JRNL TITL PRINCIPLES FOR DESIGNING IDEAL PROTEIN STRUCTURES. JRNL REF NATURE V. 491 222 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 23135467 JRNL DOI 10.1038/NATURE11600 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000102878. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.784 MM [U-100% 13C; U-100% REMARK 210 15N] OR250.001, 100 MM NACL, 5 REMARK 210 MM DTT, 0.02 % NAN3, 10 MM TRIS- REMARK 210 HCL PH 7.5, 90% H2O/10% D2O; REMARK 210 0.854 MM [U-100% 13C; U-100% 15N] REMARK 210 OR250.003, 100 MM NACL, 5 MM REMARK 210 DTT, 0.02 % NAN3, 10 MM TRIS-HCL REMARK 210 PH 7.5, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-13C AROM NOESY; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.1, AUTOASSIGN 2.1, NMRPIPE, REMARK 210 XEASY, TOPSPIN, VNMRJ, SPARKY, REMARK 210 TALOS+, PSVS REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, TORSION ANGLE REMARK 210 DYNAMICS, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 50 -61.61 -147.14 REMARK 500 1 PRO A 53 97.10 -62.44 REMARK 500 1 SER A 104 91.05 -162.64 REMARK 500 1 HIS A 108 99.17 -69.10 REMARK 500 1 HIS A 110 87.20 -150.03 REMARK 500 2 PRO A 27 89.48 -68.23 REMARK 500 2 PRO A 53 92.40 -67.12 REMARK 500 2 HIS A 108 87.75 -67.22 REMARK 500 3 HIS A 111 -67.33 -138.57 REMARK 500 4 LEU A 105 -166.93 -79.73 REMARK 500 4 HIS A 108 89.20 -64.93 REMARK 500 5 SER A 36 -174.39 -170.31 REMARK 500 5 SER A 104 -87.36 -72.58 REMARK 500 5 HIS A 111 -166.46 -166.05 REMARK 500 6 PRO A 27 30.66 -82.37 REMARK 500 6 THR A 35 -32.58 -133.92 REMARK 500 6 ASN A 59 84.99 -65.67 REMARK 500 6 THR A 86 -10.94 -140.13 REMARK 500 6 HIS A 107 93.60 -69.96 REMARK 500 7 SER A 79 89.79 -68.45 REMARK 500 7 SER A 104 -71.53 52.68 REMARK 500 8 SER A 79 94.81 -65.73 REMARK 500 8 HIS A 111 42.07 -154.41 REMARK 500 9 ASN A 59 89.10 -62.07 REMARK 500 9 HIS A 108 96.28 -68.63 REMARK 500 10 HIS A 111 68.34 -153.46 REMARK 500 11 THR A 35 -49.48 -130.22 REMARK 500 11 ASP A 49 -62.02 -91.47 REMARK 500 11 ASN A 59 81.80 -68.06 REMARK 500 12 GLU A 106 -93.95 -105.83 REMARK 500 12 HIS A 107 -84.75 57.36 REMARK 500 12 HIS A 109 43.33 -84.84 REMARK 500 12 HIS A 110 86.82 -152.48 REMARK 500 14 THR A 86 16.51 -144.84 REMARK 500 14 SER A 104 -6.25 -158.76 REMARK 500 14 HIS A 110 36.34 -146.89 REMARK 500 15 SER A 104 95.02 -61.57 REMARK 500 16 TYR A 26 79.73 -115.79 REMARK 500 17 LEU A 105 98.16 -62.84 REMARK 500 17 HIS A 108 90.95 -65.98 REMARK 500 17 HIS A 110 85.15 63.71 REMARK 500 18 SER A 104 -39.30 74.55 REMARK 500 19 ASN A 50 -33.07 -149.04 REMARK 500 19 SER A 79 91.68 -67.85 REMARK 500 19 GLU A 106 87.07 -55.64 REMARK 500 19 HIS A 110 94.98 48.27 REMARK 500 20 ASP A 11 92.19 -69.95 REMARK 500 20 HIS A 109 97.32 -61.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18561 RELATED DB: BMRB REMARK 900 RELATED ID: NESG-OR250 RELATED DB: TARGETTRACK DBREF 2LVB A 1 112 PDB 2LVB 2LVB 1 112 SEQRES 1 A 112 MET GLY LYS VAL LEU LEU VAL ILE SER THR ASP THR ASN SEQRES 2 A 112 ILE ILE SER SER VAL GLN GLU ARG ALA LYS HIS ASN TYR SEQRES 3 A 112 PRO GLY ARG GLU ILE ARG THR ALA THR SER SER GLN ASP SEQRES 4 A 112 ILE ARG ASP ILE ILE LYS SER MET LYS ASP ASN GLY LYS SEQRES 5 A 112 PRO LEU VAL VAL PHE VAL ASN GLY ALA SER GLN ASN ASP SEQRES 6 A 112 VAL ASN GLU PHE GLN ASN GLU ALA LYS LYS GLU GLY VAL SEQRES 7 A 112 SER TYR ASP VAL LEU LYS SER THR ASP PRO GLU GLU LEU SEQRES 8 A 112 THR GLN ARG VAL ARG GLU PHE LEU LYS THR ALA GLY SER SEQRES 9 A 112 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 11 TYR A 26 1 16 HELIX 2 2 SER A 36 ASN A 50 1 15 HELIX 3 3 SER A 62 LYS A 75 1 14 HELIX 4 4 ASP A 87 LEU A 105 1 19 SHEET 1 A 4 ARG A 32 ALA A 34 0 SHEET 2 A 4 PRO A 53 ASN A 59 1 O PHE A 57 N ARG A 32 SHEET 3 A 4 LYS A 3 SER A 9 1 N VAL A 7 O VAL A 58 SHEET 4 A 4 SER A 79 LYS A 84 1 O LEU A 83 N LEU A 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1