data_2LVF # _entry.id 2LVF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LVF pdb_00002lvf 10.2210/pdb2lvf/pdb RCSB RCSB102880 ? ? BMRB 6529 ? ? WWPDB D_1000102880 ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 6529 _pdbx_database_related.db_name BMRB _pdbx_database_related.details '1H, 13C and 15N chemical shifts of Ber e 1.' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LVF _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-07-04 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rundqvist, L.' 1 'Tengel, T.' 2 'Zdunek, J.' 3 'Schleucher, J.' 4 'Alcocer, M.J.' 5 'Larsson, G.' 6 # _citation.id primary _citation.title 'Solution structure, copper binding and backbone dynamics of recombinant Ber e 1-the major allergen from Brazil nut.' _citation.journal_abbrev 'Plos One' _citation.journal_volume 7 _citation.page_first e46435 _citation.page_last e46435 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23056307 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0046435 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rundqvist, L.' 1 ? primary 'Tengel, T.' 2 ? primary 'Zdunek, J.' 3 ? primary 'Bjorn, E.' 4 ? primary 'Schleucher, J.' 5 ? primary 'Alcocer, M.J.' 6 ? primary 'Larsson, G.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description '2S albumin' _entity.formula_weight 13648.980 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 37-146' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EAEAQEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPR GEQMRRMMRLAENIPSRCNLSPMRCPMGGSIAGF ; _entity_poly.pdbx_seq_one_letter_code_can ;EAEAQEECREQMQRQQMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPR GEQMRRMMRLAENIPSRCNLSPMRCPMGGSIAGF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ALA n 1 3 GLU n 1 4 ALA n 1 5 GLN n 1 6 GLU n 1 7 GLU n 1 8 CYS n 1 9 ARG n 1 10 GLU n 1 11 GLN n 1 12 MET n 1 13 GLN n 1 14 ARG n 1 15 GLN n 1 16 GLN n 1 17 MET n 1 18 LEU n 1 19 SER n 1 20 HIS n 1 21 CYS n 1 22 ARG n 1 23 MET n 1 24 TYR n 1 25 MET n 1 26 ARG n 1 27 GLN n 1 28 GLN n 1 29 MET n 1 30 GLU n 1 31 GLU n 1 32 SER n 1 33 THR n 1 34 TYR n 1 35 GLN n 1 36 THR n 1 37 MET n 1 38 PRO n 1 39 ARG n 1 40 ARG n 1 41 GLY n 1 42 MET n 1 43 GLU n 1 44 PRO n 1 45 HIS n 1 46 MET n 1 47 SER n 1 48 GLU n 1 49 CYS n 1 50 CYS n 1 51 GLU n 1 52 GLN n 1 53 LEU n 1 54 GLU n 1 55 GLY n 1 56 MET n 1 57 ASP n 1 58 GLU n 1 59 SER n 1 60 CYS n 1 61 ARG n 1 62 CYS n 1 63 GLU n 1 64 GLY n 1 65 LEU n 1 66 ARG n 1 67 MET n 1 68 MET n 1 69 MET n 1 70 ARG n 1 71 MET n 1 72 MET n 1 73 GLN n 1 74 GLN n 1 75 LYS n 1 76 GLU n 1 77 MET n 1 78 GLN n 1 79 PRO n 1 80 ARG n 1 81 GLY n 1 82 GLU n 1 83 GLN n 1 84 MET n 1 85 ARG n 1 86 ARG n 1 87 MET n 1 88 MET n 1 89 ARG n 1 90 LEU n 1 91 ALA n 1 92 GLU n 1 93 ASN n 1 94 ILE n 1 95 PRO n 1 96 SER n 1 97 ARG n 1 98 CYS n 1 99 ASN n 1 100 LEU n 1 101 SER n 1 102 PRO n 1 103 MET n 1 104 ARG n 1 105 CYS n 1 106 PRO n 1 107 MET n 1 108 GLY n 1 109 GLY n 1 110 SER n 1 111 ILE n 1 112 ALA n 1 113 GLY n 1 114 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Brazil nut' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bertholletia excelsa' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3645 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pPIC9 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B6EU55_BEREX _struct_ref.pdbx_db_accession B6EU55 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QEECREQMQRQQMLSHCRMYMRQQMEESPYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRRMMRMMQQKEMQPRGEQM RRMMRLAENIPSRCNLSPMRCPMGGSIAGF ; _struct_ref.pdbx_align_begin 37 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LVF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 114 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B6EU55 _struct_ref_seq.db_align_beg 37 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 146 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 5 _struct_ref_seq.pdbx_auth_seq_align_end 114 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2LVF GLU A 1 ? UNP B6EU55 ? ? 'expression tag' 1 1 1 2LVF ALA A 2 ? UNP B6EU55 ? ? 'expression tag' 2 2 1 2LVF GLU A 3 ? UNP B6EU55 ? ? 'expression tag' 3 3 1 2LVF ALA A 4 ? UNP B6EU55 ? ? 'expression tag' 4 4 1 2LVF THR A 33 ? UNP B6EU55 PRO 65 variant 33 5 1 2LVF MET A 67 ? UNP B6EU55 ARG 99 variant 67 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 2 '2D 1H-15N HSQC' 1 2 2 '3D 1H-15N NOESY' 1 3 1 '3D 1H-13C NOESY' 1 4 1 '3D HNHA' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.02 _pdbx_nmr_exptl_sample_conditions.pH 5.8 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1 mM [U-15N] Ber e 1, 20 mM potassium phosphate, 1 mM sodium azide, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1 mM [U-13C; U-15N] Ber e 1, 20 mM potassium phosphate, 1 mM sodium azide, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker DRX 1 'Bruker DRX' 500 Bruker AMX 2 'Bruker AMX' # _pdbx_nmr_refine.entry_id 2LVF _pdbx_nmr_refine.method 'simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 300 _pdbx_nmr_ensemble.conformers_submitted_total_number 12 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LVF _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation 1.8 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 6 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LVF _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Schwieters, Kuszewski, Tjandra and Clore' refinement XPLOR-NIH ? 1 'Schwieters, Kuszewski, Tjandra and Clore' 'geometry optimization' XPLOR-NIH ? 2 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' XPLOR-NIH ? 3 'Cornilescu, Delaglio and Bax' 'data analysis' TALOS ? 4 'Vranken et.al' 'peak picking' 'CcpNmr Analysis' ? 5 'Vranken et.al' 'data analysis' 'CcpNmr Analysis' ? 6 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 7 'Zdunek, Janusz' refinement 'Protein Constructor' ? 8 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LVF _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LVF _struct.title 'Solution structure of the Brazil Nut 2S albumin Ber e 1' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LVF _struct_keywords.pdbx_keywords ALLERGEN _struct_keywords.text 'allergen, copper binding, hydrophobic interaction' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 4 ? GLN A 15 ? ALA A 4 GLN A 15 1 ? 12 HELX_P HELX_P2 2 GLN A 16 ? GLU A 31 ? GLN A 16 GLU A 31 1 ? 16 HELX_P HELX_P3 3 GLU A 43 ? MET A 56 ? GLU A 43 MET A 56 1 ? 14 HELX_P HELX_P4 4 ASP A 57 ? MET A 77 ? ASP A 57 MET A 77 1 ? 21 HELX_P HELX_P5 5 GLY A 81 ? ASN A 99 ? GLY A 81 ASN A 99 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 60 SG ? ? A CYS 8 A CYS 60 1_555 ? ? ? ? ? ? ? 2.020 ? ? disulf2 disulf ? ? A CYS 21 SG ? ? ? 1_555 A CYS 49 SG ? ? A CYS 21 A CYS 49 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 50 A CYS 98 1_555 ? ? ? ? ? ? ? 2.020 ? ? disulf4 disulf ? ? A CYS 62 SG ? ? ? 1_555 A CYS 105 SG ? ? A CYS 62 A CYS 105 1_555 ? ? ? ? ? ? ? 2.021 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2LVF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 GLN 5 5 5 GLN GLN A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 CYS 21 21 21 CYS CYS A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 MET 23 23 23 MET MET A . n A 1 24 TYR 24 24 24 TYR TYR A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 MET 37 37 37 MET MET A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 MET 42 42 42 MET MET A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 HIS 45 45 45 HIS HIS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 CYS 49 49 49 CYS CYS A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 MET 56 56 56 MET MET A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 CYS 60 60 60 CYS CYS A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 CYS 62 62 62 CYS CYS A . n A 1 63 GLU 63 63 63 GLU GLU A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 MET 67 67 67 MET MET A . n A 1 68 MET 68 68 68 MET MET A . n A 1 69 MET 69 69 69 MET MET A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 MET 71 71 71 MET MET A . n A 1 72 MET 72 72 72 MET MET A . n A 1 73 GLN 73 73 73 GLN GLN A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 MET 77 77 77 MET MET A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 MET 84 84 84 MET MET A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 MET 87 87 87 MET MET A . n A 1 88 MET 88 88 88 MET MET A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 CYS 98 98 98 CYS CYS A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 MET 103 103 103 MET MET A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 CYS 105 105 105 CYS CYS A . n A 1 106 PRO 106 106 106 PRO PRO A . n A 1 107 MET 107 107 107 MET MET A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 ILE 111 111 111 ILE ILE A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 PHE 114 114 114 PHE PHE A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-17 2 'Structure model' 1 1 2013-01-23 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_nmr_software 4 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 3 'Structure model' '_pdbx_nmr_software.name' 5 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.0683 _pdbx_nmr_ensemble_rms.distance_rms_dev_error ? _pdbx_nmr_ensemble_rms.entry_id 2LVF _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'Ber e 1-1' 1 ? mM '[U-15N]' 1 'potassium phosphate-2' 20 ? mM ? 1 'sodium azide-3' 1 ? mM ? 1 'Ber e 1-4' 1 ? mM '[U-13C; U-15N]' 2 'potassium phosphate-5' 20 ? mM ? 2 'sodium azide-6' 1 ? mM ? 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2LVF _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1038 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 606 _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A GLN 27 ? ? H A GLU 31 ? ? 1.55 2 4 O A GLN 27 ? ? H A GLU 31 ? ? 1.56 3 5 O A GLN 27 ? ? H A GLU 31 ? ? 1.56 4 7 O A GLN 27 ? ? H A GLU 31 ? ? 1.58 5 9 O A MET 87 ? ? H A ALA 91 ? ? 1.59 6 10 O A GLN 27 ? ? H A GLU 31 ? ? 1.58 7 11 O A GLN 27 ? ? H A GLU 31 ? ? 1.57 8 11 O A MET 87 ? ? H A ALA 91 ? ? 1.58 9 12 O A MET 87 ? ? H A ALA 91 ? ? 1.54 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 16 ? ? -81.92 42.14 2 1 GLN A 35 ? ? -33.62 -31.32 3 1 THR A 36 ? ? -59.09 106.83 4 1 ARG A 40 ? ? -69.57 99.81 5 1 MET A 42 ? ? -56.51 171.49 6 1 GLU A 76 ? ? -166.70 74.95 7 1 MET A 77 ? ? -56.16 92.93 8 1 ARG A 80 ? ? -175.36 127.67 9 1 SER A 101 ? ? -33.86 96.45 10 1 PRO A 106 ? ? -58.73 5.29 11 1 ILE A 111 ? ? -94.32 -78.61 12 1 ALA A 112 ? ? -69.49 -166.90 13 2 GLN A 16 ? ? -82.66 40.99 14 2 GLN A 35 ? ? -35.73 -35.40 15 2 MET A 42 ? ? -55.50 175.47 16 2 GLU A 76 ? ? -167.74 66.73 17 2 MET A 77 ? ? -56.09 91.43 18 2 ARG A 80 ? ? -175.69 127.59 19 2 SER A 101 ? ? -33.60 96.89 20 2 PRO A 106 ? ? -61.96 5.99 21 2 ILE A 111 ? ? -94.10 -74.75 22 2 ALA A 112 ? ? -68.91 -166.67 23 3 GLN A 16 ? ? -81.24 35.07 24 3 GLN A 35 ? ? -34.60 -36.72 25 3 GLU A 76 ? ? -168.34 65.83 26 3 MET A 77 ? ? -56.66 92.29 27 3 ARG A 80 ? ? -177.08 137.53 28 3 SER A 101 ? ? -42.98 97.56 29 3 PRO A 106 ? ? -59.53 6.51 30 3 ILE A 111 ? ? -125.24 -51.98 31 3 ALA A 112 ? ? -69.36 -166.81 32 4 GLN A 16 ? ? -83.55 36.42 33 4 GLN A 35 ? ? -36.58 -36.52 34 4 GLU A 76 ? ? -167.99 75.24 35 4 MET A 77 ? ? -56.72 91.58 36 4 ARG A 80 ? ? -176.03 127.71 37 4 SER A 101 ? ? -39.41 97.19 38 4 PRO A 106 ? ? -63.20 6.86 39 4 ALA A 112 ? ? -69.42 -166.68 40 5 GLN A 16 ? ? -83.22 47.04 41 5 GLN A 35 ? ? -33.57 -32.66 42 5 THR A 36 ? ? -58.42 105.99 43 5 GLU A 76 ? ? -167.28 74.98 44 5 MET A 77 ? ? -56.69 92.43 45 5 ARG A 80 ? ? -173.10 130.76 46 5 SER A 101 ? ? -39.28 97.03 47 5 PRO A 106 ? ? -62.34 6.22 48 5 ILE A 111 ? ? -99.17 -78.68 49 6 GLN A 16 ? ? -84.51 40.42 50 6 SER A 32 ? ? -39.77 -30.24 51 6 GLN A 35 ? ? -32.87 -32.62 52 6 THR A 36 ? ? -58.53 106.48 53 6 MET A 42 ? ? -57.00 171.19 54 6 GLU A 76 ? ? -167.92 75.99 55 6 MET A 77 ? ? -54.92 93.28 56 6 ARG A 80 ? ? -176.32 127.05 57 6 SER A 101 ? ? -45.33 98.19 58 6 PRO A 106 ? ? -67.41 6.26 59 6 ILE A 111 ? ? -131.05 -39.87 60 6 ALA A 112 ? ? -67.51 -166.12 61 7 GLN A 16 ? ? -79.54 38.11 62 7 GLN A 35 ? ? -32.40 -29.63 63 7 THR A 36 ? ? -57.68 106.85 64 7 MET A 42 ? ? -56.95 179.00 65 7 GLU A 76 ? ? -167.96 71.88 66 7 MET A 77 ? ? -54.02 93.40 67 7 ARG A 80 ? ? -172.72 130.48 68 7 SER A 101 ? ? -33.74 96.13 69 7 PRO A 106 ? ? -58.88 6.58 70 8 GLN A 16 ? ? -83.06 39.02 71 8 GLN A 35 ? ? -32.41 -32.54 72 8 THR A 36 ? ? -58.00 107.32 73 8 GLU A 76 ? ? -166.39 70.68 74 8 MET A 77 ? ? -55.73 93.81 75 8 ARG A 80 ? ? -177.00 127.24 76 9 GLN A 16 ? ? -77.93 48.40 77 9 GLN A 35 ? ? -32.04 -32.88 78 9 THR A 36 ? ? -59.03 107.52 79 9 MET A 42 ? ? -56.77 179.80 80 9 GLU A 76 ? ? -168.59 76.48 81 9 MET A 77 ? ? -53.66 91.37 82 9 ARG A 80 ? ? -172.61 127.58 83 9 SER A 101 ? ? -35.97 96.24 84 9 PRO A 106 ? ? -60.33 6.58 85 9 ALA A 112 ? ? -68.96 -166.46 86 10 GLN A 16 ? ? -78.53 43.57 87 10 GLN A 35 ? ? -38.98 -16.06 88 10 THR A 36 ? ? -55.32 108.02 89 10 MET A 42 ? ? -57.84 178.45 90 10 GLU A 76 ? ? -168.01 73.33 91 10 MET A 77 ? ? -52.57 91.31 92 10 ARG A 80 ? ? -172.42 127.17 93 10 SER A 101 ? ? -39.26 96.73 94 10 ALA A 112 ? ? -66.12 -166.02 95 11 GLN A 16 ? ? -78.06 47.91 96 11 SER A 32 ? ? -32.68 -35.92 97 11 GLN A 35 ? ? -32.82 -29.12 98 11 THR A 36 ? ? -57.15 109.01 99 11 MET A 42 ? ? -57.44 170.38 100 11 GLU A 76 ? ? -167.61 72.09 101 11 MET A 77 ? ? -55.33 91.82 102 11 ARG A 80 ? ? -177.92 126.82 103 11 SER A 101 ? ? -36.66 96.34 104 11 PRO A 106 ? ? -69.59 6.49 105 12 GLN A 16 ? ? -87.60 31.57 106 12 GLN A 35 ? ? -31.63 -31.23 107 12 THR A 36 ? ? -58.06 108.90 108 12 GLU A 76 ? ? -167.28 75.78 109 12 MET A 77 ? ? -56.70 92.42 110 12 ARG A 80 ? ? -176.66 125.76 111 12 SER A 101 ? ? -34.11 94.83 #