HEADER ALLERGEN 04-JUL-12 2LVF TITLE SOLUTION STRUCTURE OF THE BRAZIL NUT 2S ALBUMIN BER E 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2S ALBUMIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 37-146; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BERTHOLLETIA EXCELSA; SOURCE 3 ORGANISM_COMMON: BRAZIL NUT; SOURCE 4 ORGANISM_TAXID: 3645; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PPIC9 KEYWDS ALLERGEN, COPPER BINDING, HYDROPHOBIC INTERACTION EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR L.RUNDQVIST,T.TENGEL,J.ZDUNEK,J.SCHLEUCHER,M.J.ALCOCER,G.LARSSON REVDAT 3 14-JUN-23 2LVF 1 REMARK SEQADV REVDAT 2 23-JAN-13 2LVF 1 JRNL REVDAT 1 17-OCT-12 2LVF 0 JRNL AUTH L.RUNDQVIST,T.TENGEL,J.ZDUNEK,E.BJORN,J.SCHLEUCHER, JRNL AUTH 2 M.J.ALCOCER,G.LARSSON JRNL TITL SOLUTION STRUCTURE, COPPER BINDING AND BACKBONE DYNAMICS OF JRNL TITL 2 RECOMBINANT BER E 1-THE MAJOR ALLERGEN FROM BRAZIL NUT. JRNL REF PLOS ONE V. 7 46435 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23056307 JRNL DOI 10.1371/JOURNAL.PONE.0046435 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH, PROTEIN CONSTRUCTOR REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (XPLOR REMARK 3 -NIH), ZDUNEK, JANUSZ (PROTEIN CONSTRUCTOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LVF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000102880. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-15N] BER E 1, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 1 MM SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O; 1 MM [U- REMARK 210 13C; U-15N] BER E 1, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 1 MM SODIUM REMARK 210 AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH, TALOS, CCPNMR REMARK 210 ANALYSIS, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 300 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 27 H GLU A 31 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 16 42.14 -81.92 REMARK 500 1 GLN A 35 -31.32 -33.62 REMARK 500 1 THR A 36 106.83 -59.09 REMARK 500 1 ARG A 40 99.81 -69.57 REMARK 500 1 MET A 42 171.49 -56.51 REMARK 500 1 GLU A 76 74.95 -166.70 REMARK 500 1 MET A 77 92.93 -56.16 REMARK 500 1 ARG A 80 127.67 -175.36 REMARK 500 1 SER A 101 96.45 -33.86 REMARK 500 1 PRO A 106 5.29 -58.73 REMARK 500 1 ILE A 111 -78.61 -94.32 REMARK 500 1 ALA A 112 -166.90 -69.49 REMARK 500 2 GLN A 16 40.99 -82.66 REMARK 500 2 GLN A 35 -35.40 -35.73 REMARK 500 2 MET A 42 175.47 -55.50 REMARK 500 2 GLU A 76 66.73 -167.74 REMARK 500 2 MET A 77 91.43 -56.09 REMARK 500 2 ARG A 80 127.59 -175.69 REMARK 500 2 SER A 101 96.89 -33.60 REMARK 500 2 PRO A 106 5.99 -61.96 REMARK 500 2 ILE A 111 -74.75 -94.10 REMARK 500 2 ALA A 112 -166.67 -68.91 REMARK 500 3 GLN A 16 35.07 -81.24 REMARK 500 3 GLN A 35 -36.72 -34.60 REMARK 500 3 GLU A 76 65.83 -168.34 REMARK 500 3 MET A 77 92.29 -56.66 REMARK 500 3 ARG A 80 137.53 -177.08 REMARK 500 3 SER A 101 97.56 -42.98 REMARK 500 3 PRO A 106 6.51 -59.53 REMARK 500 3 ILE A 111 -51.98 -125.24 REMARK 500 3 ALA A 112 -166.81 -69.36 REMARK 500 4 GLN A 16 36.42 -83.55 REMARK 500 4 GLN A 35 -36.52 -36.58 REMARK 500 4 GLU A 76 75.24 -167.99 REMARK 500 4 MET A 77 91.58 -56.72 REMARK 500 4 ARG A 80 127.71 -176.03 REMARK 500 4 SER A 101 97.19 -39.41 REMARK 500 4 PRO A 106 6.86 -63.20 REMARK 500 4 ALA A 112 -166.68 -69.42 REMARK 500 5 GLN A 16 47.04 -83.22 REMARK 500 5 GLN A 35 -32.66 -33.57 REMARK 500 5 THR A 36 105.99 -58.42 REMARK 500 5 GLU A 76 74.98 -167.28 REMARK 500 5 MET A 77 92.43 -56.69 REMARK 500 5 ARG A 80 130.76 -173.10 REMARK 500 5 SER A 101 97.03 -39.28 REMARK 500 5 PRO A 106 6.22 -62.34 REMARK 500 5 ILE A 111 -78.68 -99.17 REMARK 500 6 GLN A 16 40.42 -84.51 REMARK 500 6 SER A 32 -30.24 -39.77 REMARK 500 REMARK 500 THIS ENTRY HAS 111 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6529 RELATED DB: BMRB REMARK 900 1H, 13C AND 15N CHEMICAL SHIFTS OF BER E 1. DBREF 2LVF A 5 114 UNP B6EU55 B6EU55_BEREX 37 146 SEQADV 2LVF GLU A 1 UNP B6EU55 EXPRESSION TAG SEQADV 2LVF ALA A 2 UNP B6EU55 EXPRESSION TAG SEQADV 2LVF GLU A 3 UNP B6EU55 EXPRESSION TAG SEQADV 2LVF ALA A 4 UNP B6EU55 EXPRESSION TAG SEQADV 2LVF THR A 33 UNP B6EU55 PRO 65 VARIANT SEQADV 2LVF MET A 67 UNP B6EU55 ARG 99 VARIANT SEQRES 1 A 114 GLU ALA GLU ALA GLN GLU GLU CYS ARG GLU GLN MET GLN SEQRES 2 A 114 ARG GLN GLN MET LEU SER HIS CYS ARG MET TYR MET ARG SEQRES 3 A 114 GLN GLN MET GLU GLU SER THR TYR GLN THR MET PRO ARG SEQRES 4 A 114 ARG GLY MET GLU PRO HIS MET SER GLU CYS CYS GLU GLN SEQRES 5 A 114 LEU GLU GLY MET ASP GLU SER CYS ARG CYS GLU GLY LEU SEQRES 6 A 114 ARG MET MET MET ARG MET MET GLN GLN LYS GLU MET GLN SEQRES 7 A 114 PRO ARG GLY GLU GLN MET ARG ARG MET MET ARG LEU ALA SEQRES 8 A 114 GLU ASN ILE PRO SER ARG CYS ASN LEU SER PRO MET ARG SEQRES 9 A 114 CYS PRO MET GLY GLY SER ILE ALA GLY PHE HELIX 1 1 ALA A 4 GLN A 15 1 12 HELIX 2 2 GLN A 16 GLU A 31 1 16 HELIX 3 3 GLU A 43 MET A 56 1 14 HELIX 4 4 ASP A 57 MET A 77 1 21 HELIX 5 5 GLY A 81 ASN A 99 1 19 SSBOND 1 CYS A 8 CYS A 60 1555 1555 2.02 SSBOND 2 CYS A 21 CYS A 49 1555 1555 2.03 SSBOND 3 CYS A 50 CYS A 98 1555 1555 2.02 SSBOND 4 CYS A 62 CYS A 105 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1