HEADER DNA BINDING PROTEIN 19-JUL-12 2LW1 TITLE THE C-TERMINAL DOMAIN OF THE UUP PROTEIN IS A DNA-BINDING COILED COIL TITLE 2 MOTIF COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER ATP-BINDING PROTEIN UUP; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CTD DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: UUP, YCBH, YCBI, B0949, JW0932; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3)PLYSS AG; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS ABC REG SUBFAMILY, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.CARLIER,A.S.HAASE,M.Y.BURGOS ZEPEDA,E.DASSA,O.LEQUIN REVDAT 5 14-JUN-23 2LW1 1 REMARK REVDAT 4 27-APR-16 2LW1 1 DBREF REMARK SEQADV REVDAT 3 28-NOV-12 2LW1 1 JRNL REVDAT 2 03-OCT-12 2LW1 1 JRNL REVDAT 1 19-SEP-12 2LW1 0 JRNL AUTH L.CARLIER,A.S.HAASE,M.Y.BURGOS ZEPEDA,E.DASSA,O.LEQUIN JRNL TITL THE C-TERMINAL DOMAIN OF THE UUP PROTEIN IS A DNA-BINDING JRNL TITL 2 COILED COIL MOTIF. JRNL REF J.STRUCT.BIOL. V. 180 577 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22995754 JRNL DOI 10.1016/J.JSB.2012.09.005 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.CARLIER,A.S.HAASE,M.Y.BURGOS ZEPEDA,E.DASSA,O.LEQUIN REMARK 1 TITL SECONDARY STRUCTURE AND NMR RESONANCE ASSIGNMENTS OF THE REMARK 1 TITL 2 C-TERMINAL DNA-BINDING DOMAIN OF UUP PROTEIN. REMARK 1 REF BIOMOL.NMR ASSIGN. 2012 REMARK 1 REFN ESSN 1874-270X REMARK 1 PMID 22287065 REMARK 1 DOI 10.1007/S12104-012-9356-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CHARMM22 FORCE FIELD REMARK 4 REMARK 4 2LW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-12. REMARK 100 THE DEPOSITION ID IS D_1000102902. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 200 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 15N] UUP, 170 MM REMARK 210 SODIUM CHLORIDE, 30 MM TRIS, REMARK 210 0.111 MM DSS, 1 UM LEUPEPTINE, 1 REMARK 210 UM PEPSTATINE, 0.02 % SODIUM REMARK 210 AZIDE, 90 % H2O, 10 % D2O, 90% REMARK 210 H2O/10% D2O; 0.6 MM [U-100% 13C; REMARK 210 U-100% 15N] UUP, 170 MM SODIUM REMARK 210 CHLORIDE, 30 MM TRIS, 0.111 MM REMARK 210 DSS, 1 UM LEUPEPTINE, 1 UM REMARK 210 PEPSTATINE A, 0.02 % SODIUM REMARK 210 AZIDE, 90 % H2O, 10 % D2O, 90% REMARK 210 H2O/10% D2O; 0.6 MM [U-100% 13C; REMARK 210 U-100% 15N] UUP, 170 MM SODIUM REMARK 210 CHLORIDE, 30 MM TRIS, 1 UM REMARK 210 LEUPEPTINE, 1 UM PEPSTATINE A, REMARK 210 0.02 % SODIUM AZIDE, 100 % D2O, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N TOCSY; REMARK 210 3D HNCO; 3D HN(CA)CO; 3D CBCA(CO) REMARK 210 NH; 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D C(CO)NH; 3D H(CCO) REMARK 210 NH; 2D 1H-13C HSQC; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC; REMARK 210 3D 1H-13C NOESY AROMATIC; 2D 1H- REMARK 210 1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, TOPSPIN 2.0, ARIA 2.2, REMARK 210 CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 528 REMARK 465 GLN A 529 REMARK 465 GLN A 530 REMARK 465 GLU A 531 REMARK 465 GLN A 532 REMARK 465 TYR A 533 REMARK 465 VAL A 534 REMARK 465 ALA A 535 REMARK 465 LEU A 536 REMARK 465 LYS A 537 REMARK 465 GLN A 538 REMARK 465 PRO A 539 REMARK 465 ALA A 540 REMARK 465 VAL A 541 REMARK 465 LYS A 542 REMARK 465 LYS A 543 REMARK 465 THR A 544 REMARK 465 GLU A 545 REMARK 465 GLU A 546 REMARK 465 ALA A 547 REMARK 465 ALA A 548 REMARK 465 ALA A 549 REMARK 465 ALA A 550 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 3 LYS A 556 80.66 61.94 REMARK 500 3 SER A 558 -48.71 -179.84 REMARK 500 3 SER A 560 87.18 -151.37 REMARK 500 4 ARG A 557 72.16 -100.22 REMARK 500 4 LYS A 561 -142.69 -100.89 REMARK 500 5 ALA A 552 53.82 -105.70 REMARK 500 5 LYS A 561 -42.85 -155.32 REMARK 500 6 ARG A 557 -28.68 -147.90 REMARK 500 7 ALA A 552 -49.74 -162.56 REMARK 500 7 SER A 558 151.77 72.44 REMARK 500 7 SER A 560 -91.54 -87.60 REMARK 500 7 LEU A 562 -163.99 59.49 REMARK 500 8 ALA A 552 -90.17 60.87 REMARK 500 8 THR A 554 131.48 59.73 REMARK 500 8 LYS A 556 -83.64 67.62 REMARK 500 8 ARG A 557 79.13 56.78 REMARK 500 8 SER A 558 78.14 63.95 REMARK 500 8 LEU A 562 85.81 -159.65 REMARK 500 9 GLU A 553 -66.20 -154.36 REMARK 500 9 THR A 554 -59.95 -123.71 REMARK 500 9 VAL A 555 -55.85 -126.02 REMARK 500 9 LYS A 556 98.54 64.46 REMARK 500 9 SER A 560 75.63 59.95 REMARK 500 9 LEU A 562 95.32 63.88 REMARK 500 10 ALA A 552 -52.96 -165.87 REMARK 500 10 VAL A 555 104.43 68.06 REMARK 500 10 SER A 560 30.94 -95.35 REMARK 500 10 LYS A 561 -100.43 65.04 REMARK 500 11 GLU A 553 -59.21 72.87 REMARK 500 11 LYS A 561 155.27 73.66 REMARK 500 12 ALA A 552 105.45 66.50 REMARK 500 13 ALA A 552 -71.38 -65.00 REMARK 500 13 GLU A 553 -62.31 -96.43 REMARK 500 13 LEU A 562 77.25 55.60 REMARK 500 14 ALA A 552 109.97 69.63 REMARK 500 14 GLU A 553 79.69 62.57 REMARK 500 14 SER A 560 -83.14 53.51 REMARK 500 14 LYS A 561 -68.09 73.34 REMARK 500 15 ALA A 552 164.63 70.57 REMARK 500 15 SER A 560 63.86 -155.03 REMARK 500 15 LYS A 561 -76.64 68.79 REMARK 500 16 GLU A 553 -88.46 56.74 REMARK 500 16 THR A 554 -27.42 -161.82 REMARK 500 16 LYS A 556 54.85 -94.56 REMARK 500 16 SER A 559 34.33 -88.29 REMARK 500 17 THR A 554 18.24 -141.16 REMARK 500 17 VAL A 555 -44.19 -136.57 REMARK 500 17 LYS A 556 -91.67 61.29 REMARK 500 17 ARG A 557 -156.61 55.44 REMARK 500 17 SER A 559 -93.70 57.24 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17989 RELATED DB: BMRB DBREF 2LW1 A 528 635 UNP P43672 UUP_ECOLI 528 635 SEQRES 1 A 108 GLY GLN GLN GLU GLN TYR VAL ALA LEU LYS GLN PRO ALA SEQRES 2 A 108 VAL LYS LYS THR GLU GLU ALA ALA ALA ALA LYS ALA GLU SEQRES 3 A 108 THR VAL LYS ARG SER SER SER LYS LEU SER TYR LYS LEU SEQRES 4 A 108 GLN ARG GLU LEU GLU GLN LEU PRO GLN LEU LEU GLU ASP SEQRES 5 A 108 LEU GLU ALA LYS LEU GLU ALA LEU GLN THR GLN VAL ALA SEQRES 6 A 108 ASP ALA SER PHE PHE SER GLN PRO HIS GLU GLN THR GLN SEQRES 7 A 108 LYS VAL LEU ALA ASP MET ALA ALA ALA GLU GLN GLU LEU SEQRES 8 A 108 GLU GLN ALA PHE GLU ARG TRP GLU TYR LEU GLU ALA LEU SEQRES 9 A 108 LYS ASN GLY GLY HELIX 1 1 TYR A 564 ALA A 592 1 29 HELIX 2 2 ALA A 594 SER A 598 5 5 HELIX 3 3 HIS A 601 ASN A 633 1 33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1