data_2LWF # _entry.id 2LWF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LWF pdb_00002lwf 10.2210/pdb2lwf/pdb RCSB RCSB102916 ? ? BMRB 18624 ? ? WWPDB D_1000102916 ? ? # _pdbx_database_related.db_id 18624 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LWF _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-07-28 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # _audit_author.name 'Feng, Y.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Structural insights into the N-terminal GIY-YIG endonuclease activity of Arabidopsis glutaredoxin AtGRXS16 in chloroplasts.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 9565 _citation.page_last 9570 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23690600 _citation.pdbx_database_id_DOI 10.1073/pnas.1306899110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, X.' 1 ? primary 'Liu, S.' 2 ? primary 'Feng, Y.' 3 ? primary 'Liu, J.Z.' 4 ? primary 'Chen, Y.' 5 ? primary 'Pham, K.' 6 ? primary 'Deng, H.' 7 ? primary 'Hirschi, K.D.' 8 ? primary 'Wang, X.' 9 ? primary 'Cheng, N.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Monothiol glutaredoxin-S16, chloroplastic' _entity.formula_weight 12907.639 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'N-terminal domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AtGrxS16, CAXIP1-like protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQ AWKLWIEEHIKVTGKVPPGNKSGNNTFVKVTLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQ AWKLWIEEHIKVTGKVPPGNKSGNNTFVKVTLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 SER n 1 4 ALA n 1 5 VAL n 1 6 LYS n 1 7 SER n 1 8 LEU n 1 9 THR n 1 10 GLU n 1 11 THR n 1 12 GLU n 1 13 LEU n 1 14 LEU n 1 15 PRO n 1 16 ILE n 1 17 THR n 1 18 GLU n 1 19 ALA n 1 20 ASP n 1 21 SER n 1 22 ILE n 1 23 PRO n 1 24 SER n 1 25 ALA n 1 26 SER n 1 27 GLY n 1 28 VAL n 1 29 TYR n 1 30 ALA n 1 31 VAL n 1 32 TYR n 1 33 ASP n 1 34 LYS n 1 35 SER n 1 36 ASP n 1 37 GLU n 1 38 LEU n 1 39 GLN n 1 40 PHE n 1 41 VAL n 1 42 GLY n 1 43 ILE n 1 44 SER n 1 45 ARG n 1 46 ASN n 1 47 ILE n 1 48 ALA n 1 49 ALA n 1 50 SER n 1 51 VAL n 1 52 SER n 1 53 ALA n 1 54 HIS n 1 55 LEU n 1 56 LYS n 1 57 SER n 1 58 VAL n 1 59 PRO n 1 60 GLU n 1 61 LEU n 1 62 CYS n 1 63 GLY n 1 64 SER n 1 65 VAL n 1 66 LYS n 1 67 VAL n 1 68 GLY n 1 69 ILE n 1 70 VAL n 1 71 GLU n 1 72 GLU n 1 73 PRO n 1 74 ASP n 1 75 LYS n 1 76 ALA n 1 77 VAL n 1 78 LEU n 1 79 THR n 1 80 GLN n 1 81 ALA n 1 82 TRP n 1 83 LYS n 1 84 LEU n 1 85 TRP n 1 86 ILE n 1 87 GLU n 1 88 GLU n 1 89 HIS n 1 90 ILE n 1 91 LYS n 1 92 VAL n 1 93 THR n 1 94 GLY n 1 95 LYS n 1 96 VAL n 1 97 PRO n 1 98 PRO n 1 99 GLY n 1 100 ASN n 1 101 LYS n 1 102 SER n 1 103 GLY n 1 104 ASN n 1 105 ASN n 1 106 THR n 1 107 PHE n 1 108 VAL n 1 109 LYS n 1 110 VAL n 1 111 THR n 1 112 LEU n 1 113 GLU n 1 114 HIS n 1 115 HIS n 1 116 HIS n 1 117 HIS n 1 118 HIS n 1 119 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'mouse-ear cress,thale-cress' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'GRXS16, At2g38270, F16M14.20' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Arabidopsis thaliana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GRS16_ARATH _struct_ref.pdbx_db_accession Q8H7F6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQA WKLWIEEHIKVTGKVPPGNKSGNNTFVK ; _struct_ref.pdbx_align_begin 63 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LWF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 109 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8H7F6 _struct_ref_seq.db_align_beg 63 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 170 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 63 _struct_ref_seq.pdbx_auth_seq_align_end 170 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2LWF MET A 1 ? UNP Q8H7F6 ? ? 'initiating methionine' 62 1 1 2LWF VAL A 110 ? UNP Q8H7F6 ? ? 'expression tag' 171 2 1 2LWF THR A 111 ? UNP Q8H7F6 ? ? 'expression tag' 172 3 1 2LWF LEU A 112 ? UNP Q8H7F6 ? ? 'expression tag' 173 4 1 2LWF GLU A 113 ? UNP Q8H7F6 ? ? 'expression tag' 174 5 1 2LWF HIS A 114 ? UNP Q8H7F6 ? ? 'expression tag' 175 6 1 2LWF HIS A 115 ? UNP Q8H7F6 ? ? 'expression tag' 176 7 1 2LWF HIS A 116 ? UNP Q8H7F6 ? ? 'expression tag' 177 8 1 2LWF HIS A 117 ? UNP Q8H7F6 ? ? 'expression tag' 178 9 1 2LWF HIS A 118 ? UNP Q8H7F6 ? ? 'expression tag' 179 10 1 2LWF HIS A 119 ? UNP Q8H7F6 ? ? 'expression tag' 180 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCA' 1 5 1 '3D HNCACB' 1 6 1 '3D HNCO' 1 7 1 '3D HBHA(CO)NH' 1 8 1 '3D HCCH-TOCSY' 1 9 1 '3D HCCH-COSY' 1 10 1 '3D CCH-TOCSY' 1 11 1 '3D 1H-15N TOCSY' 1 12 1 '3D 1H-15N NOESY' 1 13 1 '3D 1H-13C NOESY aliphatic' 1 14 1 '3D 1H-13C NOESY aromatic' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.05 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.5-1.0 mM [U-13C; U-15N] protein, 50 mM sodium phosphate, 10 mM DTT, 0.02 % DSS, 0.1 v/v [U-2H] D2O, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker DMX' # _pdbx_nmr_refine.entry_id 2LWF _pdbx_nmr_refine.method 'molecular dynamics, simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LWF _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LWF _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection XwinNMR ? 1 'Accelrys Software Inc.' processing Felix ? 2 'Johnson, One Moon Scientific' 'peak picking' NMRView ? 3 'Johnson, One Moon Scientific' 'chemical shift assignment' NMRView ? 4 'Johnson, One Moon Scientific' 'data analysis' NMRView ? 5 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS ? 6 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS ? 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LWF _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LWF _struct.title 'Structure of N-terminal domain of a plant Grx' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LWF _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Nuclease, Glutaredoxin, HYDROLASE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 7 ? THR A 11 ? SER A 68 THR A 72 5 ? 5 HELX_P HELX_P2 2 GLU A 18 ? ILE A 22 ? GLU A 79 ILE A 83 5 ? 5 HELX_P HELX_P3 3 ASN A 46 ? VAL A 58 ? ASN A 107 VAL A 119 1 ? 13 HELX_P HELX_P4 4 PRO A 59 ? CYS A 62 ? PRO A 120 CYS A 123 5 ? 4 HELX_P HELX_P5 5 ASP A 74 ? THR A 93 ? ASP A 135 THR A 154 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 12 ? PRO A 15 ? GLU A 73 PRO A 76 A 2 SER A 64 ? ILE A 69 ? SER A 125 ILE A 130 A 3 GLY A 27 ? TYR A 32 ? GLY A 88 TYR A 93 A 4 LEU A 38 ? SER A 44 ? LEU A 99 SER A 105 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 14 ? N LEU A 75 O VAL A 65 ? O VAL A 126 A 2 3 O GLY A 68 ? O GLY A 129 N VAL A 28 ? N VAL A 89 A 3 4 N VAL A 31 ? N VAL A 92 O PHE A 40 ? O PHE A 101 # _atom_sites.entry_id 2LWF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 62 62 MET MET A . n A 1 2 ALA 2 63 63 ALA ALA A . n A 1 3 SER 3 64 64 SER SER A . n A 1 4 ALA 4 65 65 ALA ALA A . n A 1 5 VAL 5 66 66 VAL VAL A . n A 1 6 LYS 6 67 67 LYS LYS A . n A 1 7 SER 7 68 68 SER SER A . n A 1 8 LEU 8 69 69 LEU LEU A . n A 1 9 THR 9 70 70 THR THR A . n A 1 10 GLU 10 71 71 GLU GLU A . n A 1 11 THR 11 72 72 THR THR A . n A 1 12 GLU 12 73 73 GLU GLU A . n A 1 13 LEU 13 74 74 LEU LEU A . n A 1 14 LEU 14 75 75 LEU LEU A . n A 1 15 PRO 15 76 76 PRO PRO A . n A 1 16 ILE 16 77 77 ILE ILE A . n A 1 17 THR 17 78 78 THR THR A . n A 1 18 GLU 18 79 79 GLU GLU A . n A 1 19 ALA 19 80 80 ALA ALA A . n A 1 20 ASP 20 81 81 ASP ASP A . n A 1 21 SER 21 82 82 SER SER A . n A 1 22 ILE 22 83 83 ILE ILE A . n A 1 23 PRO 23 84 84 PRO PRO A . n A 1 24 SER 24 85 85 SER SER A . n A 1 25 ALA 25 86 86 ALA ALA A . n A 1 26 SER 26 87 87 SER SER A . n A 1 27 GLY 27 88 88 GLY GLY A . n A 1 28 VAL 28 89 89 VAL VAL A . n A 1 29 TYR 29 90 90 TYR TYR A . n A 1 30 ALA 30 91 91 ALA ALA A . n A 1 31 VAL 31 92 92 VAL VAL A . n A 1 32 TYR 32 93 93 TYR TYR A . n A 1 33 ASP 33 94 94 ASP ASP A . n A 1 34 LYS 34 95 95 LYS LYS A . n A 1 35 SER 35 96 96 SER SER A . n A 1 36 ASP 36 97 97 ASP ASP A . n A 1 37 GLU 37 98 98 GLU GLU A . n A 1 38 LEU 38 99 99 LEU LEU A . n A 1 39 GLN 39 100 100 GLN GLN A . n A 1 40 PHE 40 101 101 PHE PHE A . n A 1 41 VAL 41 102 102 VAL VAL A . n A 1 42 GLY 42 103 103 GLY GLY A . n A 1 43 ILE 43 104 104 ILE ILE A . n A 1 44 SER 44 105 105 SER SER A . n A 1 45 ARG 45 106 106 ARG ARG A . n A 1 46 ASN 46 107 107 ASN ASN A . n A 1 47 ILE 47 108 108 ILE ILE A . n A 1 48 ALA 48 109 109 ALA ALA A . n A 1 49 ALA 49 110 110 ALA ALA A . n A 1 50 SER 50 111 111 SER SER A . n A 1 51 VAL 51 112 112 VAL VAL A . n A 1 52 SER 52 113 113 SER SER A . n A 1 53 ALA 53 114 114 ALA ALA A . n A 1 54 HIS 54 115 115 HIS HIS A . n A 1 55 LEU 55 116 116 LEU LEU A . n A 1 56 LYS 56 117 117 LYS LYS A . n A 1 57 SER 57 118 118 SER SER A . n A 1 58 VAL 58 119 119 VAL VAL A . n A 1 59 PRO 59 120 120 PRO PRO A . n A 1 60 GLU 60 121 121 GLU GLU A . n A 1 61 LEU 61 122 122 LEU LEU A . n A 1 62 CYS 62 123 123 CYS CYS A . n A 1 63 GLY 63 124 124 GLY GLY A . n A 1 64 SER 64 125 125 SER SER A . n A 1 65 VAL 65 126 126 VAL VAL A . n A 1 66 LYS 66 127 127 LYS LYS A . n A 1 67 VAL 67 128 128 VAL VAL A . n A 1 68 GLY 68 129 129 GLY GLY A . n A 1 69 ILE 69 130 130 ILE ILE A . n A 1 70 VAL 70 131 131 VAL VAL A . n A 1 71 GLU 71 132 132 GLU GLU A . n A 1 72 GLU 72 133 133 GLU GLU A . n A 1 73 PRO 73 134 134 PRO PRO A . n A 1 74 ASP 74 135 135 ASP ASP A . n A 1 75 LYS 75 136 136 LYS LYS A . n A 1 76 ALA 76 137 137 ALA ALA A . n A 1 77 VAL 77 138 138 VAL VAL A . n A 1 78 LEU 78 139 139 LEU LEU A . n A 1 79 THR 79 140 140 THR THR A . n A 1 80 GLN 80 141 141 GLN GLN A . n A 1 81 ALA 81 142 142 ALA ALA A . n A 1 82 TRP 82 143 143 TRP TRP A . n A 1 83 LYS 83 144 144 LYS LYS A . n A 1 84 LEU 84 145 145 LEU LEU A . n A 1 85 TRP 85 146 146 TRP TRP A . n A 1 86 ILE 86 147 147 ILE ILE A . n A 1 87 GLU 87 148 148 GLU GLU A . n A 1 88 GLU 88 149 149 GLU GLU A . n A 1 89 HIS 89 150 150 HIS HIS A . n A 1 90 ILE 90 151 151 ILE ILE A . n A 1 91 LYS 91 152 152 LYS LYS A . n A 1 92 VAL 92 153 153 VAL VAL A . n A 1 93 THR 93 154 154 THR THR A . n A 1 94 GLY 94 155 155 GLY GLY A . n A 1 95 LYS 95 156 156 LYS LYS A . n A 1 96 VAL 96 157 157 VAL VAL A . n A 1 97 PRO 97 158 158 PRO PRO A . n A 1 98 PRO 98 159 159 PRO PRO A . n A 1 99 GLY 99 160 160 GLY GLY A . n A 1 100 ASN 100 161 161 ASN ASN A . n A 1 101 LYS 101 162 162 LYS LYS A . n A 1 102 SER 102 163 163 SER SER A . n A 1 103 GLY 103 164 164 GLY GLY A . n A 1 104 ASN 104 165 165 ASN ASN A . n A 1 105 ASN 105 166 166 ASN ASN A . n A 1 106 THR 106 167 167 THR THR A . n A 1 107 PHE 107 168 168 PHE PHE A . n A 1 108 VAL 108 169 169 VAL VAL A . n A 1 109 LYS 109 170 170 LYS LYS A . n A 1 110 VAL 110 171 171 VAL VAL A . n A 1 111 THR 111 172 172 THR THR A . n A 1 112 LEU 112 173 173 LEU LEU A . n A 1 113 GLU 113 174 174 GLU GLU A . n A 1 114 HIS 114 175 175 HIS HIS A . n A 1 115 HIS 115 176 176 HIS HIS A . n A 1 116 HIS 116 177 177 HIS HIS A . n A 1 117 HIS 117 178 178 HIS HIS A . n A 1 118 HIS 118 179 179 HIS HIS A . n A 1 119 HIS 119 180 180 HIS HIS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-22 2 'Structure model' 1 1 2013-06-05 3 'Structure model' 1 2 2013-06-19 4 'Structure model' 1 3 2013-06-26 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' pdbx_database_status 3 5 'Structure model' pdbx_nmr_software 4 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 5 'Structure model' '_pdbx_nmr_software.name' 5 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id entity-1 ? 0.5-1.0 mM '[U-13C; U-15N]' 1 'sodium phosphate-2' 50 ? mM ? 1 DTT-3 10 ? mM ? 1 DSS-4 0.02 ? % ? 1 D2O-5 0.1 ? v/v '[U-2H]' 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 7 HZ2 A LYS 144 ? ? OE1 A GLU 148 ? ? 1.60 2 11 HZ3 A LYS 144 ? ? OE1 A GLU 148 ? ? 1.60 3 12 H1 A MET 62 ? ? OE1 A GLU 73 ? ? 1.57 4 15 H3 A MET 62 ? ? OE1 A GLU 132 ? ? 1.58 5 15 HZ3 A LYS 136 ? ? OE1 A GLU 174 ? ? 1.60 6 17 HZ1 A LYS 144 ? ? OE2 A GLU 148 ? ? 1.55 7 17 OE2 A GLU 149 ? ? HZ1 A LYS 152 ? ? 1.59 8 17 HZ1 A LYS 67 ? ? OE1 A GLU 71 ? ? 1.60 9 19 OE1 A GLU 98 ? ? HZ2 A LYS 156 ? ? 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 64 ? ? -167.29 -164.52 2 1 GLU A 79 ? ? -93.16 54.20 3 1 SER A 85 ? ? -92.90 39.01 4 1 ASP A 97 ? ? 62.33 67.75 5 1 THR A 154 ? ? -131.70 -30.21 6 1 GLU A 174 ? ? 45.70 72.56 7 1 HIS A 175 ? ? -148.24 47.33 8 1 HIS A 178 ? ? -176.78 89.43 9 2 LYS A 67 ? ? -95.39 -82.01 10 2 GLU A 79 ? ? -92.97 30.58 11 2 SER A 85 ? ? -99.16 49.51 12 2 ASP A 94 ? ? -79.94 -167.93 13 2 PRO A 134 ? ? -84.84 34.03 14 2 THR A 167 ? ? -55.62 -4.85 15 2 THR A 172 ? ? 67.40 -59.65 16 2 GLU A 174 ? ? 178.99 172.53 17 3 GLU A 79 ? ? -94.14 38.93 18 3 ASP A 94 ? ? -79.52 -168.54 19 3 PRO A 134 ? ? -86.11 36.24 20 3 SER A 163 ? ? -55.33 109.78 21 3 VAL A 171 ? ? -128.46 -136.99 22 4 GLU A 79 ? ? -107.96 53.79 23 4 PRO A 120 ? ? -77.53 24.64 24 4 PRO A 134 ? ? -76.39 46.75 25 4 GLU A 174 ? ? 70.15 -62.12 26 4 HIS A 179 ? ? 66.62 88.22 27 5 SER A 64 ? ? -140.84 -68.72 28 5 ALA A 65 ? ? 38.84 96.52 29 5 GLU A 79 ? ? -98.49 53.68 30 5 SER A 85 ? ? -92.97 31.68 31 5 CYS A 123 ? ? -67.95 96.66 32 5 VAL A 157 ? ? -158.60 77.37 33 5 LYS A 170 ? ? 77.01 135.79 34 5 LEU A 173 ? ? 76.07 -179.78 35 5 HIS A 176 ? ? -56.79 99.15 36 5 HIS A 179 ? ? -125.29 -70.21 37 6 ALA A 65 ? ? 79.46 145.62 38 6 LYS A 67 ? ? -86.52 -77.48 39 6 GLU A 79 ? ? -96.95 54.13 40 6 ASP A 94 ? ? -78.64 -166.96 41 6 PRO A 120 ? ? -76.65 24.47 42 6 VAL A 157 ? ? 41.13 75.99 43 6 LYS A 170 ? ? -87.50 33.40 44 6 HIS A 178 ? ? 76.69 179.42 45 7 ALA A 65 ? ? 64.01 -173.91 46 7 LYS A 67 ? ? -61.39 -77.49 47 7 GLU A 79 ? ? -112.93 53.26 48 7 ASP A 94 ? ? -78.64 -168.16 49 7 PRO A 120 ? ? -74.07 24.13 50 7 PRO A 134 ? ? -82.31 32.47 51 7 LEU A 173 ? ? 68.31 164.42 52 7 HIS A 175 ? ? 70.72 -44.02 53 8 ALA A 63 ? ? -140.17 -58.84 54 8 SER A 64 ? ? -163.70 98.35 55 8 GLU A 79 ? ? -103.49 53.79 56 8 PRO A 134 ? ? -82.91 32.92 57 8 LYS A 170 ? ? 67.33 134.96 58 8 HIS A 175 ? ? 53.74 80.44 59 9 ALA A 63 ? ? -169.29 -35.83 60 9 GLU A 79 ? ? -104.85 53.15 61 9 ASP A 94 ? ? -79.16 -169.44 62 9 LYS A 170 ? ? -68.88 1.40 63 9 HIS A 179 ? ? -179.54 -39.11 64 10 LYS A 67 ? ? -79.80 -152.55 65 10 PRO A 120 ? ? -73.53 21.12 66 10 PRO A 134 ? ? -76.83 39.29 67 10 SER A 163 ? ? -102.95 -152.72 68 10 ASN A 166 ? ? -103.34 -79.54 69 10 VAL A 171 ? ? 53.56 -79.74 70 10 HIS A 179 ? ? -100.90 -162.49 71 11 ALA A 63 ? ? -105.89 77.70 72 11 GLU A 79 ? ? -109.63 54.25 73 11 SER A 85 ? ? -94.05 30.65 74 11 PRO A 134 ? ? -78.32 39.41 75 11 LYS A 170 ? ? 64.09 -165.49 76 11 THR A 172 ? ? 63.17 -47.88 77 11 HIS A 178 ? ? -146.58 -60.39 78 12 LYS A 67 ? ? -128.39 -72.59 79 12 GLU A 79 ? ? -94.56 56.09 80 12 SER A 85 ? ? -98.60 34.21 81 12 PRO A 134 ? ? -82.72 37.92 82 12 HIS A 178 ? ? -154.85 23.33 83 13 GLU A 79 ? ? -101.62 53.07 84 13 SER A 85 ? ? -95.50 32.79 85 13 PRO A 120 ? ? -79.27 32.56 86 13 LYS A 162 ? ? -76.01 -82.10 87 13 HIS A 175 ? ? -121.88 -71.66 88 14 GLU A 79 ? ? -102.09 53.57 89 14 VAL A 157 ? ? -158.43 86.87 90 14 LYS A 170 ? ? 73.69 -71.85 91 14 VAL A 171 ? ? 58.68 76.75 92 14 HIS A 179 ? ? -161.79 -49.53 93 15 ALA A 63 ? ? -65.34 99.97 94 15 LYS A 67 ? ? -104.68 -86.77 95 15 GLU A 79 ? ? -107.26 52.77 96 15 PRO A 134 ? ? -88.80 32.37 97 15 VAL A 157 ? ? -155.84 70.96 98 15 ASN A 166 ? ? -131.63 -68.33 99 15 LYS A 170 ? ? 69.02 88.04 100 15 THR A 172 ? ? -178.59 -44.00 101 15 GLU A 174 ? ? 54.51 100.51 102 15 HIS A 178 ? ? 71.35 116.09 103 16 GLU A 79 ? ? -97.85 55.48 104 16 SER A 85 ? ? -89.58 36.38 105 16 ASP A 94 ? ? -78.92 -167.19 106 16 PRO A 134 ? ? -77.84 45.41 107 16 THR A 154 ? ? -130.88 -36.11 108 16 LYS A 170 ? ? -167.16 109.06 109 17 SER A 64 ? ? 71.37 149.33 110 17 GLU A 79 ? ? -90.34 53.91 111 17 PRO A 134 ? ? -88.90 37.74 112 17 THR A 154 ? ? -138.01 -31.27 113 17 SER A 163 ? ? 71.13 112.53 114 17 LYS A 170 ? ? 77.51 -61.81 115 17 HIS A 175 ? ? 71.27 159.69 116 17 HIS A 177 ? ? -69.79 97.29 117 18 LYS A 67 ? ? -88.06 -70.13 118 18 GLU A 79 ? ? -95.14 50.89 119 18 SER A 85 ? ? -95.30 34.74 120 18 PRO A 134 ? ? -79.65 31.52 121 18 LYS A 156 ? ? -91.47 -70.58 122 18 VAL A 157 ? ? 41.40 83.27 123 18 LYS A 162 ? ? -64.26 -71.54 124 18 SER A 163 ? ? 178.35 151.85 125 18 LYS A 170 ? ? 65.81 -83.53 126 19 GLU A 79 ? ? -97.95 47.89 127 19 PRO A 120 ? ? -68.84 14.28 128 19 LYS A 170 ? ? -176.16 140.51 129 19 HIS A 178 ? ? 70.43 109.06 130 20 SER A 64 ? ? -95.03 31.47 131 20 GLU A 79 ? ? -99.43 52.97 132 20 SER A 85 ? ? -93.69 35.72 133 20 ASP A 97 ? ? 61.51 62.94 134 20 PRO A 120 ? ? -74.84 29.75 135 20 LYS A 156 ? ? -78.95 -74.94 136 20 LYS A 170 ? ? -92.38 36.80 137 20 GLU A 174 ? ? -99.46 32.94 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 5 ARG A 106 ? ? 0.086 'SIDE CHAIN' 2 10 ARG A 106 ? ? 0.074 'SIDE CHAIN' #