data_2LWM # _entry.id 2LWM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2LWM RCSB RCSB102923 BMRB 18638 WWPDB D_1000102923 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 18638 BMRB unspecified . 2LWN PDB unspecified . 2LWO PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LWM _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-08-03 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zalianyak, T.' 1 'de los Santos, C.' 2 'Lukin, M.' 3 'Attaluri, S.' 4 'Johnson, F.' 5 # _citation.id primary _citation.title 'Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion' _citation.journal_abbrev Chem.Res.Toxicol. _citation.journal_volume 25 _citation.page_first 2423 _citation.page_last 2431 _citation.year 2012 _citation.journal_id_ASTM CRTOEC _citation.country US _citation.journal_id_ISSN 0893-228X _citation.journal_id_CSD 2140 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22897814 _citation.pdbx_database_id_DOI 10.1021/tx300290b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lukin, M.' 1 primary 'Zaliznyak, T.' 2 primary 'Attaluri, S.' 3 primary 'Johnson, F.' 4 primary 'de Los Santos, C.' 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3') ; 3350.229 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3') ; 3374.210 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DG)(DT)(DA)(DC)(LWM)(DC)(DA)(DT)(DG)(DC)' CGTACXCATGC B ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DT)(DG)(DC)(DG)(DT)(DA)(DC)(DG)' GCATGCGTACG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 LWM n 1 7 DC n 1 8 DA n 1 9 DT n 1 10 DG n 1 11 DC n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DT n 2 9 DA n 2 10 DC n 2 11 DG n # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2LWM 2LWM 1 ? ? ? 2 PDB 2LWM 2LWM 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2LWM B 1 ? 11 ? 2LWM 1 ? 11 ? 1 11 2 2 2LWM D 1 ? 11 ? 2LWM 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 LWM 'DNA linking' . '[(1R,2S,4R)-4-{[2-amino-5-(formylamino)-6-oxo-1,6-dihydropyrimidin-4-yl]amino}-2-hydroxycyclopentyl]methyl dihydrogen phosphate' ? 'C11 H18 N5 O7 P' 363.264 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H COSY' 1 3 1 '2D DQF-COSY' 1 4 1 '2D 1H-1H TOCSY' 1 5 1 '2D 1H-13C HSQC' 2 6 2 '2D 1H-1H NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 ? 6.8 ambient ? 298 K 2 ? 6.8 ambient ? 278 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1.1 mM 11 mer duplex oligo B-D, 25 mM phosphate buffer, 50 mM NaCl, 0.5 mM EDTA, 100% D2O' 1 '100% D2O' '1.1 mM 11 mer duplex oligo B-D, 25 mM phosphate buffer, 50 mM NaCl, 0.5 mM EDTA, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model Avance _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2LWM _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 25 _pdbx_nmr_ensemble.conformers_submitted_total_number 26 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LWM _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LWM _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TOPSPIN ? 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 2 Goddard 'chemical shift assignment' SPARKY ? 3 Goddard 'data analysis' SPARKY ? 4 Goddard 'peak picking' SPARKY ? 5 Goddard 'peak volume calc.' SPARKY ? 6 'Schwieters, Kuszewski, Tjandra and Clore' 'geometry optimization' X-PLOR_NIH ? 7 'Schwieters, Kuszewski, Tjandra and Clore' refinement X-PLOR_NIH ? 8 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' X-PLOR_NIH ? 9 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LWM _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LWM _struct.title 'Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion' _struct.pdbx_descriptor "5'-D(*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3'/5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3'" _struct.pdbx_model_details 'minimized average structure, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2LWM _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Oxidative damage, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A DC 5 "O3'" ? ? ? 1_555 A LWM 6 P1 ? ? B DC 5 B LWM 6 1_555 ? ? ? ? ? ? ? 1.617 ? covale2 covale ? ? A LWM 6 "O3'" ? ? ? 1_555 A DC 7 P ? ? B LWM 6 B DC 7 1_555 ? ? ? ? ? ? ? 1.626 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 11 N1 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 11 O6 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 11 N2 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 10 N3 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 10 O2 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 10 N4 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 3 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 3 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 4 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 4 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 5 N1 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 5 O6 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 5 N2 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 8 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 8 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 9 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 9 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 2LWM _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC B . n A 1 2 DG 2 2 2 DG DG B . n A 1 3 DT 3 3 3 DT DT B . n A 1 4 DA 4 4 4 DA DA B . n A 1 5 DC 5 5 5 DC DC B . n A 1 6 LWM 6 6 6 LWM LWM B . n A 1 7 DC 7 7 7 DC DC B . n A 1 8 DA 8 8 8 DA DA B . n A 1 9 DT 9 9 9 DT DT B . n A 1 10 DG 10 10 10 DG DG B . n A 1 11 DC 11 11 11 DC DC B . n B 2 1 DG 1 1 1 DG DG D . n B 2 2 DC 2 2 2 DC DC D . n B 2 3 DA 3 3 3 DA DA D . n B 2 4 DT 4 4 4 DT DT D . n B 2 5 DG 5 5 5 DG DG D . n B 2 6 DC 6 6 6 DC DC D . n B 2 7 DG 7 7 7 DG DG D . n B 2 8 DT 8 8 8 DT DT D . n B 2 9 DA 9 9 9 DA DA D . n B 2 10 DC 10 10 10 DC DC D . n B 2 11 DG 11 11 11 DG DG D . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-02-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id '11 mer duplex oligo B-D-1' 1.1 ? mM ? 1 'phosphate buffer-2' 25 ? mM ? 1 NaCl-3 50 ? mM ? 1 EDTA-4 0.5 ? mM ? 1 '11 mer duplex oligo B-D-5' 1.1 ? mM ? 2 'phosphate buffer-6' 25 ? mM ? 2 NaCl-7 50 ? mM ? 2 EDTA-8 0.5 ? mM ? 2 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.534 1.496 0.038 0.006 N 2 1 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.535 1.496 0.039 0.006 N 3 2 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.532 1.496 0.036 0.006 N 4 2 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.534 1.496 0.038 0.006 N 5 2 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.532 1.496 0.036 0.006 N 6 3 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.533 1.496 0.037 0.006 N 7 3 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.534 1.496 0.038 0.006 N 8 5 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.533 1.496 0.037 0.006 N 9 5 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.534 1.496 0.038 0.006 N 10 5 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.532 1.496 0.036 0.006 N 11 6 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.537 1.496 0.041 0.006 N 12 6 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.595 1.529 0.066 0.010 N 13 6 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.535 1.496 0.039 0.006 N 14 7 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.538 1.496 0.042 0.006 N 15 7 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.533 1.496 0.037 0.006 N 16 7 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.535 1.496 0.039 0.006 N 17 7 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.532 1.496 0.036 0.006 N 18 8 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.591 1.529 0.062 0.010 N 19 8 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 20 9 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.537 1.496 0.041 0.006 N 21 9 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.532 1.496 0.036 0.006 N 22 10 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.538 1.496 0.042 0.006 N 23 10 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 24 11 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.533 1.496 0.037 0.006 N 25 11 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.591 1.529 0.062 0.010 N 26 11 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 27 12 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.533 1.496 0.037 0.006 N 28 12 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.589 1.529 0.060 0.010 N 29 13 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.532 1.496 0.036 0.006 N 30 14 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.539 1.496 0.043 0.006 N 31 14 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.593 1.529 0.064 0.010 N 32 14 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 33 15 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.534 1.496 0.038 0.006 N 34 15 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.534 1.496 0.038 0.006 N 35 15 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.535 1.496 0.039 0.006 N 36 16 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.536 1.496 0.040 0.006 N 37 16 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.533 1.496 0.037 0.006 N 38 16 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.534 1.496 0.038 0.006 N 39 16 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.534 1.496 0.038 0.006 N 40 17 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.538 1.496 0.042 0.006 N 41 17 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.590 1.529 0.061 0.010 N 42 17 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.532 1.496 0.036 0.006 N 43 18 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.533 1.496 0.037 0.006 N 44 19 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.534 1.496 0.038 0.006 N 45 19 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.590 1.529 0.061 0.010 N 46 19 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.532 1.496 0.036 0.006 N 47 20 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 48 21 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.536 1.496 0.040 0.006 N 49 22 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.541 1.496 0.045 0.006 N 50 22 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.537 1.496 0.041 0.006 N 51 22 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.539 1.496 0.043 0.006 N 52 23 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.537 1.496 0.041 0.006 N 53 23 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.595 1.529 0.066 0.010 N 54 23 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.534 1.496 0.038 0.006 N 55 24 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.533 1.496 0.037 0.006 N 56 24 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.595 1.529 0.066 0.010 N 57 24 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.535 1.496 0.039 0.006 N 58 25 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.590 1.529 0.061 0.010 N 59 25 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.532 1.496 0.036 0.006 N 60 26 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.532 1.496 0.036 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.89 108.30 2.59 0.30 N 2 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.09 108.30 3.79 0.30 N 3 1 N1 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 122.55 118.90 3.65 0.60 N 4 1 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 128.11 119.70 8.41 1.20 Y 5 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.33 108.30 2.03 0.30 N 6 1 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.21 108.30 1.91 0.30 N 7 1 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.20 108.30 1.90 0.30 N 8 1 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 112.06 108.30 3.76 0.30 N 9 1 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.38 108.30 3.08 0.30 N 10 2 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.05 108.30 2.75 0.30 N 11 2 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 110.15 108.30 1.85 0.30 N 12 2 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 129.05 119.70 9.35 1.20 Y 13 2 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.10 108.30 1.80 0.30 N 14 2 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 113.36 108.30 5.06 0.30 N 15 2 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 110.25 108.30 1.95 0.30 N 16 2 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.18 108.30 1.88 0.30 N 17 2 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.65 108.30 2.35 0.30 N 18 2 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.53 108.30 2.23 0.30 N 19 2 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.30 108.30 3.00 0.30 N 20 3 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.37 108.30 3.07 0.30 N 21 3 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.19 119.70 7.49 1.20 Y 22 3 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.90 108.30 2.60 0.30 N 23 3 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.21 108.30 2.91 0.30 N 24 3 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 111.18 108.30 2.88 0.30 N 25 3 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.51 108.30 2.21 0.30 N 26 3 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.83 108.30 4.53 0.30 N 27 4 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.44 108.30 3.14 0.30 N 28 4 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 129.51 119.70 9.81 1.20 Y 29 4 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.31 108.30 2.01 0.30 N 30 4 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.37 108.30 2.07 0.30 N 31 4 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.81 108.30 2.51 0.30 N 32 4 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 112.15 108.30 3.85 0.30 N 33 4 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.06 108.30 2.76 0.30 N 34 5 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.34 108.30 3.04 0.30 N 35 5 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.61 119.70 7.91 1.20 Y 36 5 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.67 108.30 2.37 0.30 N 37 5 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.89 108.30 2.59 0.30 N 38 5 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.57 108.30 2.27 0.30 N 39 5 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.23 108.30 2.93 0.30 N 40 6 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.08 108.30 3.78 0.30 N 41 6 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.66 119.70 7.96 1.20 Y 42 6 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.07 108.30 2.77 0.30 N 43 6 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 119.28 122.90 -3.62 0.60 N 44 6 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 112.85 108.30 4.55 0.30 N 45 6 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.71 108.30 2.41 0.30 N 46 6 "C3'" D DC 6 ? ? "O3'" D DC 6 ? ? P D DG 7 ? ? 127.54 119.70 7.84 1.20 Y 47 6 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.75 108.30 2.45 0.30 N 48 6 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.80 108.30 3.50 0.30 N 49 7 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.34 108.30 3.04 0.30 N 50 7 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 128.09 119.70 8.39 1.20 Y 51 7 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.51 108.30 2.21 0.30 N 52 7 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.53 108.30 2.23 0.30 N 53 7 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.61 108.30 2.31 0.30 N 54 7 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? N1 D DC 6 ? ? 110.96 108.30 2.66 0.30 N 55 7 "C3'" D DC 6 ? ? "O3'" D DC 6 ? ? P D DG 7 ? ? 128.01 119.70 8.31 1.20 Y 56 7 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.38 108.30 2.08 0.30 N 57 7 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.88 108.30 2.58 0.30 N 58 8 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.10 108.30 2.80 0.30 N 59 8 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.49 119.70 7.79 1.20 Y 60 8 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.17 108.30 2.87 0.30 N 61 8 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 119.27 122.90 -3.63 0.60 N 62 8 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.41 108.30 2.11 0.30 N 63 8 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.40 108.30 2.10 0.30 N 64 8 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.69 108.30 2.39 0.30 N 65 8 "C3'" D DG 5 ? ? "O3'" D DG 5 ? ? P D DC 6 ? ? 127.72 119.70 8.02 1.20 Y 66 8 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 111.94 108.30 3.64 0.30 N 67 8 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.40 108.30 2.10 0.30 N 68 9 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.12 108.30 2.82 0.30 N 69 9 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 129.40 119.70 9.70 1.20 Y 70 9 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 119.23 122.90 -3.67 0.60 N 71 9 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.31 108.30 2.01 0.30 N 72 9 "C3'" D DG 5 ? ? "O3'" D DG 5 ? ? P D DC 6 ? ? 127.72 119.70 8.02 1.20 Y 73 9 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 112.17 108.30 3.87 0.30 N 74 9 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.45 108.30 2.15 0.30 N 75 10 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.41 108.30 3.11 0.30 N 76 10 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.83 119.70 8.13 1.20 Y 77 10 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.15 108.30 1.85 0.30 N 78 10 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.12 108.30 1.82 0.30 N 79 10 "C3'" D DG 5 ? ? "O3'" D DG 5 ? ? P D DC 6 ? ? 127.87 119.70 8.17 1.20 Y 80 10 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 112.38 108.30 4.08 0.30 N 81 10 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 113.60 108.30 5.30 0.30 N 82 11 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.29 108.30 1.99 0.30 N 83 11 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.37 108.30 3.07 0.30 N 84 11 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 129.70 119.70 10.00 1.20 Y 85 11 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.80 108.30 3.50 0.30 N 86 11 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.62 108.30 2.32 0.30 N 87 11 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.52 108.30 2.22 0.30 N 88 11 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.31 108.30 2.01 0.30 N 89 11 "C3'" D DG 5 ? ? "O3'" D DG 5 ? ? P D DC 6 ? ? 127.30 119.70 7.60 1.20 Y 90 11 "O4'" D DC 6 ? ? "C4'" D DC 6 ? ? "C3'" D DC 6 ? ? 109.73 106.00 3.73 0.60 N 91 11 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 112.35 108.30 4.05 0.30 N 92 11 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.75 108.30 2.45 0.30 N 93 12 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.45 108.30 3.15 0.30 N 94 12 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.97 119.70 8.27 1.20 Y 95 12 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.27 108.30 2.97 0.30 N 96 12 "O4'" B DC 11 ? ? "C4'" B DC 11 ? ? "C3'" B DC 11 ? ? 110.02 106.00 4.02 0.60 N 97 12 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.59 108.30 2.29 0.30 N 98 12 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 111.10 108.30 2.80 0.30 N 99 12 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 112.04 108.30 3.74 0.30 N 100 12 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.96 108.30 2.66 0.30 N 101 13 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.22 108.30 3.92 0.30 N 102 13 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 128.59 119.70 8.89 1.20 Y 103 13 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.70 108.30 2.40 0.30 N 104 13 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 110.23 108.30 1.93 0.30 N 105 13 "C3'" D DG 5 ? ? "O3'" D DG 5 ? ? P D DC 6 ? ? 128.18 119.70 8.48 1.20 Y 106 13 "O4'" D DC 6 ? ? "C1'" D DC 6 ? ? N1 D DC 6 ? ? 110.54 108.30 2.24 0.30 N 107 13 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 111.76 108.30 3.46 0.30 N 108 13 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.94 108.30 2.64 0.30 N 109 14 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.59 108.30 3.29 0.30 N 110 14 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 128.18 119.70 8.48 1.20 Y 111 14 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.81 108.30 2.51 0.30 N 112 14 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 116.40 108.30 8.10 0.30 N 113 14 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 111.01 108.30 2.71 0.30 N 114 14 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.48 108.30 2.18 0.30 N 115 14 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.16 108.30 1.86 0.30 N 116 14 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.18 108.30 3.88 0.30 N 117 15 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 110.35 108.30 2.05 0.30 N 118 15 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.74 119.70 8.04 1.20 Y 119 15 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.62 108.30 2.32 0.30 N 120 15 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.73 108.30 2.43 0.30 N 121 15 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.70 108.30 2.40 0.30 N 122 15 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.47 108.30 2.17 0.30 N 123 15 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.05 108.30 3.75 0.30 N 124 16 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.65 108.30 3.35 0.30 N 125 16 N1 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 122.52 118.90 3.62 0.60 N 126 16 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.02 119.70 7.32 1.20 Y 127 16 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.03 108.30 2.73 0.30 N 128 16 N1 D DC 2 ? ? C2 D DC 2 ? ? O2 D DC 2 ? ? 122.52 118.90 3.62 0.60 N 129 16 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 111.01 108.30 2.71 0.30 N 130 16 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.67 108.30 2.37 0.30 N 131 16 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.07 108.30 3.77 0.30 N 132 17 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.39 108.30 3.09 0.30 N 133 17 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 129.72 119.70 10.02 1.20 Y 134 17 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.51 108.30 2.21 0.30 N 135 17 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.17 108.30 1.87 0.30 N 136 17 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.91 119.70 8.21 1.20 Y 137 17 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.56 108.30 2.26 0.30 N 138 17 "C3'" D DC 6 ? ? "O3'" D DC 6 ? ? P D DG 7 ? ? 127.42 119.70 7.72 1.20 Y 139 17 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.33 108.30 2.03 0.30 N 140 17 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.21 108.30 2.91 0.30 N 141 18 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.69 108.30 3.39 0.30 N 142 18 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.47 108.30 2.17 0.30 N 143 18 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.25 108.30 1.95 0.30 N 144 18 N1 D DC 2 ? ? C2 D DC 2 ? ? O2 D DC 2 ? ? 122.50 118.90 3.60 0.60 N 145 18 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.70 108.30 2.40 0.30 N 146 18 "C3'" D DC 6 ? ? "O3'" D DC 6 ? ? P D DG 7 ? ? 127.59 119.70 7.89 1.20 Y 147 18 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.29 108.30 2.99 0.30 N 148 19 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 112.05 108.30 3.75 0.30 N 149 19 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 129.32 119.70 9.62 1.20 Y 150 19 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.58 108.30 2.28 0.30 N 151 19 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.49 108.30 2.19 0.30 N 152 19 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 111.66 108.30 3.36 0.30 N 153 19 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.95 108.30 2.65 0.30 N 154 20 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.69 108.30 3.39 0.30 N 155 20 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 112.06 108.30 3.76 0.30 N 156 20 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 129.98 119.70 10.28 1.20 Y 157 20 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.86 108.30 2.56 0.30 N 158 20 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 111.90 108.30 3.60 0.30 N 159 20 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.35 108.30 4.05 0.30 N 160 21 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.53 108.30 3.23 0.30 N 161 21 N1 B DC 5 ? ? C2 B DC 5 ? ? O2 B DC 5 ? ? 122.51 118.90 3.61 0.60 N 162 21 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.82 119.70 8.12 1.20 Y 163 21 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.20 108.30 2.90 0.30 N 164 21 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.10 108.30 1.80 0.30 N 165 21 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.85 108.30 2.55 0.30 N 166 21 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 112.06 108.30 3.76 0.30 N 167 21 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.78 108.30 2.48 0.30 N 168 22 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.21 108.30 2.91 0.30 N 169 22 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 111.01 108.30 2.71 0.30 N 170 22 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.69 119.70 7.99 1.20 Y 171 22 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.46 108.30 2.16 0.30 N 172 22 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.60 108.30 2.30 0.30 N 173 22 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.56 108.30 2.26 0.30 N 174 22 "C3'" D DC 6 ? ? "O3'" D DC 6 ? ? P D DG 7 ? ? 127.84 119.70 8.14 1.20 Y 175 22 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.92 108.30 2.62 0.30 N 176 22 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 112.28 108.30 3.98 0.30 N 177 23 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.37 108.30 3.07 0.30 N 178 23 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 111.27 108.30 2.97 0.30 N 179 23 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 128.45 119.70 8.75 1.20 Y 180 23 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.99 108.30 2.69 0.30 N 181 23 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.13 108.30 1.83 0.30 N 182 23 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 110.55 108.30 2.25 0.30 N 183 23 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.24 108.30 1.94 0.30 N 184 23 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.86 108.30 2.56 0.30 N 185 23 "C3'" D DC 6 ? ? "O3'" D DC 6 ? ? P D DG 7 ? ? 127.67 119.70 7.97 1.20 Y 186 23 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.46 108.30 2.16 0.30 N 187 23 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.25 108.30 2.95 0.30 N 188 24 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.98 108.30 3.68 0.30 N 189 24 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 128.05 119.70 8.35 1.20 Y 190 24 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.32 108.30 2.02 0.30 N 191 24 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.29 108.30 1.99 0.30 N 192 24 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.56 108.30 2.26 0.30 N 193 24 "C3'" D DC 6 ? ? "O3'" D DC 6 ? ? P D DG 7 ? ? 127.84 119.70 8.14 1.20 Y 194 24 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.77 108.30 2.47 0.30 N 195 25 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.44 108.30 3.14 0.30 N 196 25 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 131.67 119.70 11.97 1.20 Y 197 25 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.14 108.30 1.84 0.30 N 198 25 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 110.83 108.30 2.53 0.30 N 199 25 "C3'" D DC 6 ? ? "O3'" D DC 6 ? ? P D DG 7 ? ? 128.33 119.70 8.63 1.20 Y 200 25 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 110.14 108.30 1.84 0.30 N 201 25 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.68 108.30 2.38 0.30 N 202 26 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.34 108.30 3.04 0.30 N 203 26 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 110.23 108.30 1.93 0.30 N 204 26 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.32 119.70 7.62 1.20 Y 205 26 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 111.25 108.30 2.95 0.30 N 206 26 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 111.43 108.30 3.13 0.30 N 207 26 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 111.85 108.30 3.55 0.30 N 208 26 N1 B DC 11 ? ? C2 B DC 11 ? ? O2 B DC 11 ? ? 123.16 118.90 4.26 0.60 N 209 26 "O4'" D DT 4 ? ? "C1'" D DT 4 ? ? N1 D DT 4 ? ? 110.78 108.30 2.48 0.30 N 210 26 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 112.05 108.30 3.75 0.30 N 211 26 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 111.13 108.30 2.83 0.30 N 212 26 "O4'" D DC 10 ? ? "C1'" D DC 10 ? ? N1 D DC 10 ? ? 110.94 108.30 2.64 0.30 N 213 26 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 113.44 108.30 5.14 0.30 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2LWM 'double helix' 2LWM 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 11 1_555 0.790 -0.294 -0.026 -2.085 0.616 -0.259 1 B_DC1:DG11_D B 1 ? D 11 ? 19 1 1 A DG 2 1_555 B DC 10 1_555 -0.630 -0.247 0.069 -2.172 -6.833 -1.634 2 B_DG2:DC10_D B 2 ? D 10 ? 19 1 1 A DT 3 1_555 B DA 9 1_555 -0.209 -0.178 0.143 -6.432 -6.416 -1.545 3 B_DT3:DA9_D B 3 ? D 9 ? 20 1 1 A DA 4 1_555 B DT 8 1_555 0.233 -0.190 0.101 3.396 -8.949 -2.711 4 B_DA4:DT8_D B 4 ? D 8 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 0.698 -0.248 -0.121 5.289 -3.810 -2.813 5 B_DC5:DG7_D B 5 ? D 7 ? 19 1 1 A DC 7 1_555 B DG 5 1_555 0.754 -0.329 0.658 -12.905 -1.541 -2.183 6 B_DC7:DG5_D B 7 ? D 5 ? 19 1 1 A DA 8 1_555 B DT 4 1_555 0.253 -0.184 0.307 -1.325 -11.481 -5.560 7 B_DA8:DT4_D B 8 ? D 4 ? 20 1 1 A DT 9 1_555 B DA 3 1_555 -0.189 -0.168 0.243 -0.757 -11.371 -5.410 8 B_DT9:DA3_D B 9 ? D 3 ? 20 1 1 A DG 10 1_555 B DC 2 1_555 -0.666 -0.259 0.302 6.133 -1.453 -2.552 9 B_DG10:DC2_D B 10 ? D 2 ? 19 1 1 A DC 11 1_555 B DG 1 1_555 0.711 -0.257 0.009 2.601 0.130 0.102 10 B_DC11:DG1_D B 11 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 11 1_555 A DG 2 1_555 B DC 10 1_555 -0.049 -1.926 3.123 -0.321 3.299 20.566 -6.616 0.011 2.783 9.164 0.890 20.829 1 BB_DC1DG2:DC10DG11_DD B 1 ? D 11 ? B 2 ? D 10 ? 1 A DG 2 1_555 B DC 10 1_555 A DT 3 1_555 B DA 9 1_555 -0.200 -1.415 3.441 0.795 -5.830 34.073 -1.402 0.470 3.621 -9.857 -1.344 34.563 2 BB_DG2DT3:DA9DC10_DD B 2 ? D 10 ? B 3 ? D 9 ? 1 A DT 3 1_555 B DA 9 1_555 A DA 4 1_555 B DT 8 1_555 0.036 -0.398 3.012 -0.146 6.366 36.151 -1.426 -0.076 2.902 10.162 0.233 36.689 3 BB_DT3DA4:DT8DA9_DD B 3 ? D 9 ? B 4 ? D 8 ? 1 A DA 4 1_555 B DT 8 1_555 A DC 5 1_555 B DG 7 1_555 0.630 -1.213 3.355 1.898 -3.925 35.283 -1.385 -0.741 3.493 -6.444 -3.116 35.543 4 BB_DA4DC5:DG7DT8_DD B 4 ? D 8 ? B 5 ? D 7 ? 1 A DC 7 1_555 B DG 5 1_555 A DA 8 1_555 B DT 4 1_555 -0.570 -1.289 2.704 3.536 2.123 28.075 -3.022 1.816 2.512 4.346 -7.238 28.370 5 BB_DC7DA8:DT4DG5_DD B 7 ? D 5 ? B 8 ? D 4 ? 1 A DA 8 1_555 B DT 4 1_555 A DT 9 1_555 B DA 3 1_555 0.070 -1.273 3.243 -0.505 -2.751 32.302 -1.792 -0.215 3.336 -4.933 0.905 32.419 6 BB_DA8DT9:DA3DT4_DD B 8 ? D 4 ? B 9 ? D 3 ? 1 A DT 9 1_555 B DA 3 1_555 A DG 10 1_555 B DC 2 1_555 0.191 -1.410 3.098 -1.690 -1.493 26.349 -2.703 -0.848 3.154 -3.268 3.698 26.444 7 BB_DT9DG10:DC2DA3_DD B 9 ? D 3 ? B 10 ? D 2 ? 1 A DG 10 1_555 B DC 2 1_555 A DC 11 1_555 B DG 1 1_555 0.141 -1.064 3.543 1.243 -8.492 40.809 -0.495 -0.052 3.685 -12.018 -1.760 41.664 8 BB_DG10DC11:DG1DC2_DD B 10 ? D 2 ? B 11 ? D 1 ? #