data_2LWO # _entry.id 2LWO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2LWO RCSB RCSB102925 BMRB 18640 WWPDB D_1000102925 # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 18640 BMRB unspecified . 2LWM PDB unspecified . 2LWN PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LWO _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-08-03 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zalianyak, T.' 1 'de los Santos, C.' 2 'Lukin, M.' 3 'Attaluri, S.' 4 'Johnson, F.' 5 # _citation.id primary _citation.title 'Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion' _citation.journal_abbrev Chem.Res.Toxicol. _citation.journal_volume 25 _citation.page_first 2423 _citation.page_last 2431 _citation.year 2012 _citation.journal_id_ASTM CRTOEC _citation.country US _citation.journal_id_ISSN 0893-228X _citation.journal_id_CSD 2140 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22897814 _citation.pdbx_database_id_DOI 10.1021/tx300290b # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lukin, M.' 1 primary 'Zaliznyak, T.' 2 primary 'Attaluri, S.' 3 primary 'Johnson, F.' 4 primary 'de Los Santos, C.' 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*G*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3') ; 3679.435 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3') ; 3374.210 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DC)(DG)(DT)(DA)(DC)(LWM)(DC)(DA)(DT)(DG)(DC)' GCGTACXCATGC B ? 2 polydeoxyribonucleotide no no '(DG)(DC)(DA)(DT)(DG)(DC)(DG)(DT)(DA)(DC)(DG)' GCATGCGTACG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DC n 1 7 LWM n 1 8 DC n 1 9 DA n 1 10 DT n 1 11 DG n 1 12 DC n 2 1 DG n 2 2 DC n 2 3 DA n 2 4 DT n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DT n 2 9 DA n 2 10 DC n 2 11 DG n # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2LWO 2LWO 1 ? ? ? 2 PDB 2LWO 2LWO 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2LWO B 1 ? 12 ? 2LWO 0 ? 11 ? 0 11 2 2 2LWO D 1 ? 11 ? 2LWO 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 LWM 'DNA linking' . '[(1R,2S,4R)-4-{[2-amino-5-(formylamino)-6-oxo-1,6-dihydropyrimidin-4-yl]amino}-2-hydroxycyclopentyl]methyl dihydrogen phosphate' ? 'C11 H18 N5 O7 P' 363.264 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-1H COSY' 1 3 1 '2D DQF-COSY' 1 4 1 '2D 1H-1H TOCSY' 1 5 1 '2D 1H-13C HSQC' 2 6 2 '2D 1H-1H NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 ? 6.8 ambient ? 298 K 2 ? 6.8 ambient ? 278 K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1.1 mM 11 mer duplex oligo B-D, 25 mM phosphate buffer, 50 mM NaCl, 0.5 mM EDTA, 100% D2O' 1 '100% D2O' '1.1 mM 11 mer duplex oligo B-D, 25 mM phosphate buffer, 50 mM NaCl, 0.5 mM EDTA, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model Avance _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2LWO _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 6 _pdbx_nmr_ensemble.conformers_submitted_total_number 7 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LWO _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LWO _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TOPSPIN ? 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 2 Goddard 'chemical shift assignment' SPARKY ? 3 Goddard 'data analysis' SPARKY ? 4 Goddard 'peak picking' SPARKY ? 5 Goddard 'peak volume calc.' SPARKY ? 6 'Schwieters, Kuszewski, Tjandra and Clore' 'geometry optimization' X-PLOR_NIH ? 7 'Schwieters, Kuszewski, Tjandra and Clore' refinement X-PLOR_NIH ? 8 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' X-PLOR_NIH ? 9 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LWO _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LWO _struct.title 'Solution Structure of Duplex DNA Containing a b-Carba-Fapy-dG Lesion' _struct.pdbx_descriptor "5'-D(*G*CP*GP*TP*AP*C*(LWM)P*CP*AP*TP*GP*C)-3'" _struct.pdbx_model_details 'minimized average structure, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2LWO _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Oxidative damage, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A DC 6 "O3'" ? ? ? 1_555 A LWM 7 P1 ? ? B DC 5 B LWM 6 1_555 ? ? ? ? ? ? ? 1.615 ? covale2 covale ? ? A LWM 7 "O3'" ? ? ? 1_555 A DC 8 P ? ? B LWM 6 B DC 7 1_555 ? ? ? ? ? ? ? 1.616 ? hydrog1 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? B DC 1 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 10 N3 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 10 O2 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 10 N4 ? ? B DG 2 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 9 N1 ? ? B DT 3 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 9 N6 ? ? B DT 3 D DA 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? B DA 4 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? B DA 4 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 7 N1 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 7 O6 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 7 N2 ? ? B DC 5 D DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 5 N1 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 5 O6 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 5 N2 ? ? B DC 7 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DA 9 N1 ? ? ? 1_555 B DT 4 N3 ? ? B DA 8 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DT 4 O4 ? ? B DA 8 D DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 9 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 9 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 2 N3 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 2 O2 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 2 N4 ? ? B DG 10 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? B DC 11 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 2LWO _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 0 ? ? ? B . n A 1 2 DC 2 1 1 DC CYT B . n A 1 3 DG 3 2 2 DG GUA B . n A 1 4 DT 4 3 3 DT THY B . n A 1 5 DA 5 4 4 DA ADE B . n A 1 6 DC 6 5 5 DC CYT B . n A 1 7 LWM 7 6 6 LWM CFP B . n A 1 8 DC 8 7 7 DC CYT B . n A 1 9 DA 9 8 8 DA ADE B . n A 1 10 DT 10 9 9 DT THY B . n A 1 11 DG 11 10 10 DG GUA B . n A 1 12 DC 12 11 11 DC CYT B . n B 2 1 DG 1 1 1 DG GUA D . n B 2 2 DC 2 2 2 DC CYT D . n B 2 3 DA 3 3 3 DA ADE D . n B 2 4 DT 4 4 4 DT THY D . n B 2 5 DG 5 5 5 DG GUA D . n B 2 6 DC 6 6 6 DC CYT D . n B 2 7 DG 7 7 7 DG GUA D . n B 2 8 DT 8 8 8 DT THY D . n B 2 9 DA 9 9 9 DA ADE D . n B 2 10 DC 10 10 10 DC CYT D . n B 2 11 DG 11 11 11 DG GUA D . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2013-02-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id '11 mer duplex oligo B-D-1' 1.1 ? mM ? 1 'phosphate buffer-2' 25 ? mM ? 1 NaCl-3 50 ? mM ? 1 EDTA-4 0.5 ? mM ? 1 '11 mer duplex oligo B-D-5' 1.1 ? mM ? 2 'phosphate buffer-6' 25 ? mM ? 2 NaCl-7 50 ? mM ? 2 EDTA-8 0.5 ? mM ? 2 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.534 1.496 0.038 0.006 N 2 1 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.595 1.529 0.066 0.010 N 3 1 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.532 1.496 0.036 0.006 N 4 1 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.534 1.496 0.038 0.006 N 5 1 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.537 1.496 0.041 0.006 N 6 2 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.534 1.496 0.038 0.006 N 7 2 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.534 1.496 0.038 0.006 N 8 2 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.535 1.496 0.039 0.006 N 9 2 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.536 1.496 0.040 0.006 N 10 3 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.532 1.496 0.036 0.006 N 11 3 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.600 1.529 0.071 0.010 N 12 3 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.535 1.496 0.039 0.006 N 13 3 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.533 1.496 0.037 0.006 N 14 4 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.540 1.496 0.044 0.006 N 15 4 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.589 1.529 0.060 0.010 N 16 4 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.538 1.496 0.042 0.006 N 17 4 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.537 1.496 0.041 0.006 N 18 4 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.534 1.496 0.038 0.006 N 19 5 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.533 1.496 0.037 0.006 N 20 5 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.595 1.529 0.066 0.010 N 21 5 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 22 5 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.535 1.496 0.039 0.006 N 23 6 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.533 1.496 0.037 0.006 N 24 6 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.601 1.529 0.072 0.010 N 25 6 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.534 1.496 0.038 0.006 N 26 6 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.534 1.496 0.038 0.006 N 27 7 C5 B DT 3 ? ? C7 B DT 3 ? ? 1.542 1.496 0.046 0.006 N 28 7 "C4'" B DA 4 ? ? "C3'" B DA 4 ? ? 1.598 1.529 0.069 0.010 N 29 7 C5 B DT 9 ? ? C7 B DT 9 ? ? 1.534 1.496 0.038 0.006 N 30 7 C5 D DT 4 ? ? C7 D DT 4 ? ? 1.533 1.496 0.037 0.006 N 31 7 C5 D DT 8 ? ? C7 D DT 8 ? ? 1.533 1.496 0.037 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 110.88 108.30 2.58 0.30 N 2 1 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 110.81 108.30 2.51 0.30 N 3 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.11 108.30 1.81 0.30 N 4 1 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.80 108.30 2.50 0.30 N 5 1 "C3'" D DC 6 ? ? "O3'" D DC 6 ? ? P D DG 7 ? ? 127.93 119.70 8.23 1.20 Y 6 1 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 112.11 108.30 3.81 0.30 N 7 1 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.70 108.30 2.40 0.30 N 8 2 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 110.97 108.30 2.67 0.30 N 9 2 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.39 108.30 2.09 0.30 N 10 2 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.99 108.30 2.69 0.30 N 11 2 N1 D DC 6 ? ? C2 D DC 6 ? ? O2 D DC 6 ? ? 122.50 118.90 3.60 0.60 N 12 2 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 112.17 108.30 3.87 0.30 N 13 2 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.40 108.30 2.10 0.30 N 14 3 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 111.00 108.30 2.70 0.30 N 15 3 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 110.23 108.30 1.93 0.30 N 16 3 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 119.24 122.90 -3.66 0.60 N 17 3 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.85 108.30 2.55 0.30 N 18 3 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 111.24 108.30 2.94 0.30 N 19 3 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 113.81 108.30 5.51 0.30 N 20 4 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 110.94 108.30 2.64 0.30 N 21 4 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 110.43 108.30 2.13 0.30 N 22 4 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 110.93 108.30 2.63 0.30 N 23 4 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.43 108.30 2.13 0.30 N 24 4 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.72 108.30 2.42 0.30 N 25 4 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 113.33 108.30 5.03 0.30 N 26 5 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 110.11 108.30 1.81 0.30 N 27 5 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.23 119.70 7.53 1.20 Y 28 5 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 110.79 108.30 2.49 0.30 N 29 5 "O4'" B DT 9 ? ? "C1'" B DT 9 ? ? N1 B DT 9 ? ? 110.11 108.30 1.81 0.30 N 30 5 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.82 108.30 2.52 0.30 N 31 5 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.87 108.30 2.57 0.30 N 32 5 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 114.23 108.30 5.93 0.30 N 33 5 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.40 108.30 2.10 0.30 N 34 6 "O4'" B DC 1 ? ? "C4'" B DC 1 ? ? "C3'" B DC 1 ? ? 109.71 106.00 3.71 0.60 N 35 6 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.26 108.30 2.96 0.30 N 36 6 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 131.38 119.70 11.68 1.20 Y 37 6 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 110.86 108.30 2.56 0.30 N 38 6 C6 B DT 9 ? ? C5 B DT 9 ? ? C7 B DT 9 ? ? 119.16 122.90 -3.74 0.60 N 39 6 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.77 108.30 2.47 0.30 N 40 6 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 111.14 108.30 2.84 0.30 N 41 6 "C3'" D DC 6 ? ? "O3'" D DC 6 ? ? P D DG 7 ? ? 127.62 119.70 7.92 1.20 Y 42 6 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 112.33 108.30 4.03 0.30 N 43 6 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 110.59 108.30 2.29 0.30 N 44 7 "O4'" B DC 1 ? ? "C4'" B DC 1 ? ? "C3'" B DC 1 ? ? 109.84 106.00 3.84 0.60 N 45 7 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 110.23 108.30 1.93 0.30 N 46 7 "C3'" B LWM 6 ? ? "O3'" B LWM 6 ? ? P B DC 7 ? ? 127.09 119.70 7.39 1.20 Y 47 7 "O4'" B DA 8 ? ? "C1'" B DA 8 ? ? N9 B DA 8 ? ? 110.53 108.30 2.23 0.30 N 48 7 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.54 108.30 2.24 0.30 N 49 7 "O4'" D DG 1 ? ? "C4'" D DG 1 ? ? "C3'" D DG 1 ? ? 110.09 106.00 4.09 0.60 N 50 7 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.21 119.70 7.51 1.20 Y 51 7 "O4'" D DA 3 ? ? "C1'" D DA 3 ? ? N9 D DA 3 ? ? 110.47 108.30 2.17 0.30 N 52 7 "O4'" D DG 7 ? ? "C1'" D DG 7 ? ? N9 D DG 7 ? ? 113.24 108.30 4.94 0.30 N 53 7 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.75 108.30 3.45 0.30 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B DC 1 ? P ? A DC 2 P 2 1 Y 1 B DC 1 ? OP1 ? A DC 2 OP1 3 1 Y 1 B DC 1 ? OP2 ? A DC 2 OP2 4 2 Y 1 B DC 1 ? P ? A DC 2 P 5 2 Y 1 B DC 1 ? OP1 ? A DC 2 OP1 6 2 Y 1 B DC 1 ? OP2 ? A DC 2 OP2 7 3 Y 1 B DC 1 ? P ? A DC 2 P 8 3 Y 1 B DC 1 ? OP1 ? A DC 2 OP1 9 3 Y 1 B DC 1 ? OP2 ? A DC 2 OP2 10 4 Y 1 B DC 1 ? P ? A DC 2 P 11 4 Y 1 B DC 1 ? OP1 ? A DC 2 OP1 12 4 Y 1 B DC 1 ? OP2 ? A DC 2 OP2 13 5 Y 1 B DC 1 ? P ? A DC 2 P 14 5 Y 1 B DC 1 ? OP1 ? A DC 2 OP1 15 5 Y 1 B DC 1 ? OP2 ? A DC 2 OP2 16 6 Y 1 B DC 1 ? P ? A DC 2 P 17 6 Y 1 B DC 1 ? OP1 ? A DC 2 OP1 18 6 Y 1 B DC 1 ? OP2 ? A DC 2 OP2 19 7 Y 1 B DC 1 ? P ? A DC 2 P 20 7 Y 1 B DC 1 ? OP1 ? A DC 2 OP1 21 7 Y 1 B DC 1 ? OP2 ? A DC 2 OP2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B DG 0 ? A DG 1 2 2 Y 1 B DG 0 ? A DG 1 3 3 Y 1 B DG 0 ? A DG 1 4 4 Y 1 B DG 0 ? A DG 1 5 5 Y 1 B DG 0 ? A DG 1 6 6 Y 1 B DG 0 ? A DG 1 7 7 Y 1 B DG 0 ? A DG 1 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2LWO 'double helix' 2LWO 'b-form double helix' 2LWO 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 2 1_555 B DG 11 1_555 0.772 -0.285 0.034 -4.368 2.899 -0.426 1 B_DC1:DG11_D B 1 ? D 11 ? 19 1 1 A DG 3 1_555 B DC 10 1_555 -0.585 -0.213 0.377 8.205 -7.136 -0.969 2 B_DG2:DC10_D B 2 ? D 10 ? 19 1 1 A DT 4 1_555 B DA 9 1_555 -0.151 -0.150 -0.053 6.672 -10.730 1.909 3 B_DT3:DA9_D B 3 ? D 9 ? 20 1 1 A DA 5 1_555 B DT 8 1_555 -0.151 -0.212 -0.015 2.038 -8.766 5.320 4 B_DA4:DT8_D B 4 ? D 8 ? 20 1 1 A DC 6 1_555 B DG 7 1_555 0.829 -0.308 -0.442 15.221 -8.836 -0.593 5 B_DC5:DG7_D B 5 ? D 7 ? 19 1 1 A DC 8 1_555 B DG 5 1_555 0.814 -0.312 0.396 -4.107 -0.590 -0.505 6 B_DC7:DG5_D B 7 ? D 5 ? 19 1 1 A DA 9 1_555 B DT 4 1_555 0.226 -0.199 0.405 5.758 -14.149 -4.069 7 B_DA8:DT4_D B 8 ? D 4 ? 20 1 1 A DT 10 1_555 B DA 3 1_555 -0.237 -0.132 0.144 -1.578 -9.717 -3.336 8 B_DT9:DA3_D B 9 ? D 3 ? 20 1 1 A DG 11 1_555 B DC 2 1_555 -0.767 -0.294 0.242 3.599 -2.800 -1.934 9 B_DG10:DC2_D B 10 ? D 2 ? 19 1 1 A DC 12 1_555 B DG 1 1_555 0.726 -0.239 -0.032 2.947 -0.460 -0.759 10 B_DC11:DG1_D B 11 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 2 1_555 B DG 11 1_555 A DG 3 1_555 B DC 10 1_555 0.034 -1.325 2.685 -3.312 6.987 20.403 -5.570 -1.070 2.089 18.873 8.947 21.804 1 BB_DC1DG2:DC10DG11_DD B 1 ? D 11 ? B 2 ? D 10 ? 1 A DG 3 1_555 B DC 10 1_555 A DT 4 1_555 B DA 9 1_555 0.004 -0.899 3.316 2.820 -1.287 35.855 -1.268 0.402 3.336 -2.087 -4.570 35.984 2 BB_DG2DT3:DA9DC10_DD B 2 ? D 10 ? B 3 ? D 9 ? 1 A DT 4 1_555 B DA 9 1_555 A DA 5 1_555 B DT 8 1_555 0.668 -0.291 3.320 -1.270 12.449 32.576 -2.377 -1.308 2.986 21.241 2.167 34.836 3 BB_DT3DA4:DT8DA9_DD B 3 ? D 9 ? B 4 ? D 8 ? 1 A DA 5 1_555 B DT 8 1_555 A DC 6 1_555 B DG 7 1_555 0.211 -0.331 3.190 0.856 -1.605 40.264 -0.303 -0.211 3.204 -2.331 -1.243 40.304 4 BB_DA4DC5:DG7DT8_DD B 4 ? D 8 ? B 5 ? D 7 ? 1 A DC 8 1_555 B DG 5 1_555 A DA 9 1_555 B DT 4 1_555 -0.094 -1.034 2.808 -1.347 3.151 29.981 -2.526 -0.051 2.689 6.066 2.593 30.172 5 BB_DC7DA8:DT4DG5_DD B 7 ? D 5 ? B 8 ? D 4 ? 1 A DA 9 1_555 B DT 4 1_555 A DT 10 1_555 B DA 3 1_555 0.180 -1.513 3.524 1.583 -2.984 32.611 -2.118 -0.021 3.648 -5.296 -2.809 32.781 6 BB_DA8DT9:DA3DT4_DD B 8 ? D 4 ? B 9 ? D 3 ? 1 A DT 10 1_555 B DA 3 1_555 A DG 11 1_555 B DC 2 1_555 -0.035 -1.391 3.151 -0.812 -1.102 26.388 -2.759 -0.133 3.205 -2.413 1.777 26.423 7 BB_DT9DG10:DC2DA3_DD B 9 ? D 3 ? B 10 ? D 2 ? 1 A DG 11 1_555 B DC 2 1_555 A DC 12 1_555 B DG 1 1_555 0.084 -0.874 3.431 1.391 -6.972 41.098 -0.440 0.040 3.528 -9.842 -1.964 41.682 8 BB_DG10DC11:DG1DC2_DD B 10 ? D 2 ? B 11 ? D 1 ? #