HEADER UNKNOWN FUNCTION 09-AUG-12 2LWY TITLE SOLUTION STRUCTURE OF BACTERIAL INTEIN-LIKE DOMAIN FROM CLOSTRIDIUM TITLE 2 THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIAL INTEIN-LIKE DOMAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM THERMOCELLUM; SOURCE 3 ORGANISM_TAXID: 203119; SOURCE 4 STRAIN: ATCC 27405 / DSM 1237; SOURCE 5 GENE: CTHE_2047; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSCFRSF17 KEYWDS BIL, CTHBIL4, BACTERIAL INTEIN-LIKE, HINT, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.S.ARANKO,J.S.OEEMIG,H.IWAI REVDAT 4 14-JUN-23 2LWY 1 REMARK SEQADV REVDAT 3 17-JUL-13 2LWY 1 JRNL REVDAT 2 26-JUN-13 2LWY 1 JRNL REVDAT 1 08-MAY-13 2LWY 0 JRNL AUTH A.S.ARANKO,J.S.OEEMIG,H.IWAI JRNL TITL STRUCTURAL BASIS FOR PROTEIN TRANS-SPLICING BY A BACTERIAL JRNL TITL 2 INTEIN-LIKE DOMAIN - PROTEIN LIGATION WITHOUT NUCLEOPHILIC JRNL TITL 3 SIDE CHAINS. JRNL REF FEBS J. V. 280 3256 2013 JRNL REFN ISSN 1742-464X JRNL PMID 23621571 JRNL DOI 10.1111/FEBS.12307 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, AMBER REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), CASE, DARDEN, CHEATHAM, III, SIMMERLING, REMARK 3 WANG, DUKE, LUO, ... AND KOLLMAN (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LWY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000102935. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-99% 15N] REMARK 210 CTHBIL4, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D C(CO) REMARK 210 NH; 3D HNCO; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D HN(CA)CO; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CING, CYANA 3, VNMRJ, CCPNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 4 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 5 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 7 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 8 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 8 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 9 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 10 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 11 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 12 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 13 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 14 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 15 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 16 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 17 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 17 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 20 ARG A 47 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 20 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 75 -58.99 -133.80 REMARK 500 1 ASP A 120 -53.25 -143.81 REMARK 500 2 VAL A 75 -50.60 -136.29 REMARK 500 2 ASP A 120 -36.90 -133.60 REMARK 500 3 MET A -2 -45.90 -151.82 REMARK 500 3 ASP A 74 10.09 58.70 REMARK 500 3 VAL A 75 -47.81 -131.55 REMARK 500 3 ASP A 120 -41.08 -138.63 REMARK 500 4 VAL A 75 -44.66 -132.06 REMARK 500 4 ASP A 120 -37.08 -148.28 REMARK 500 5 THR A 33 -3.91 -144.91 REMARK 500 5 ASP A 74 15.50 59.99 REMARK 500 5 VAL A 75 -59.15 -125.26 REMARK 500 6 VAL A 75 -42.11 -141.65 REMARK 500 6 SER A 92 -6.60 -59.89 REMARK 500 6 ASP A 120 -48.16 -133.99 REMARK 500 7 VAL A 75 -54.56 -122.77 REMARK 500 8 VAL A 75 -63.89 -126.54 REMARK 500 8 ASP A 120 -63.63 -128.48 REMARK 500 9 VAL A 75 -58.67 -133.97 REMARK 500 9 ASP A 120 -45.33 -141.61 REMARK 500 10 THR A 33 -2.11 -144.12 REMARK 500 10 VAL A 75 -54.91 -130.19 REMARK 500 10 ASP A 120 -49.93 -148.60 REMARK 500 11 ALA A 4 150.49 -48.29 REMARK 500 11 VAL A 75 -54.76 -129.12 REMARK 500 11 SER A 92 -6.01 -56.79 REMARK 500 11 ASP A 120 -34.86 -155.12 REMARK 500 12 ASP A 74 19.42 57.31 REMARK 500 12 VAL A 75 -58.80 -130.31 REMARK 500 12 ASP A 119 -76.28 -60.02 REMARK 500 13 ASP A 74 16.83 59.15 REMARK 500 13 VAL A 75 -51.61 -132.28 REMARK 500 13 ASP A 120 -63.86 -148.61 REMARK 500 13 HIS A 122 36.11 -70.02 REMARK 500 14 THR A 33 -2.18 -141.83 REMARK 500 14 ASP A 74 12.06 56.27 REMARK 500 14 VAL A 75 -56.49 -125.74 REMARK 500 14 SER A 92 -7.25 -56.00 REMARK 500 14 ASP A 120 -47.27 -145.87 REMARK 500 15 VAL A 75 -50.63 -144.12 REMARK 500 15 ASP A 120 -47.50 -145.35 REMARK 500 16 VAL A 75 -50.26 -123.75 REMARK 500 16 ASP A 120 -48.83 -139.60 REMARK 500 17 VAL A 75 -53.48 -132.09 REMARK 500 18 MET A -2 -40.49 -154.41 REMARK 500 18 THR A 33 -4.13 -143.36 REMARK 500 18 VAL A 75 -45.33 -135.77 REMARK 500 18 SER A 92 -1.31 -58.19 REMARK 500 18 ASP A 119 -72.40 -67.35 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 4 TYR A 124 0.08 SIDE CHAIN REMARK 500 8 TYR A 45 0.08 SIDE CHAIN REMARK 500 9 TYR A 45 0.07 SIDE CHAIN REMARK 500 14 TYR A 124 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18653 RELATED DB: BMRB DBREF 2LWY A -2 135 UNP A3DH25 A3DH25_CLOTH 309 445 SEQADV 2LWY SER A -3 UNP A3DH25 EXPRESSION TAG SEQADV 2LWY ALA A 1 UNP A3DH25 CYS 311 ENGINEERED MUTATION SEQRES 1 A 138 SER MET LYS ALA PHE VAL ALA GLY THR MET ILE LEU THR SEQRES 2 A 138 ALA THR GLY LEU VAL ALA ILE GLU ASN ILE LYS ALA GLY SEQRES 3 A 138 ASP LYS VAL ILE ALA THR ASN PRO GLU THR PHE GLU VAL SEQRES 4 A 138 ALA GLU LYS THR VAL LEU GLU THR TYR VAL ARG GLU THR SEQRES 5 A 138 THR GLU LEU LEU HIS LEU THR ILE GLY GLY GLU VAL ILE SEQRES 6 A 138 LYS THR THR PHE ASP HIS PRO PHE TYR VAL LYS ASP VAL SEQRES 7 A 138 GLY PHE VAL GLU ALA GLY LYS LEU GLN VAL GLY ASP LYS SEQRES 8 A 138 LEU LEU ASP SER ARG GLY ASN VAL LEU VAL VAL GLU GLU SEQRES 9 A 138 LYS LYS LEU GLU ILE ALA ASP LYS PRO VAL LYS VAL TYR SEQRES 10 A 138 ASN PHE LYS VAL ASP ASP PHE HIS THR TYR HIS VAL GLY SEQRES 11 A 138 ASP ASN GLU VAL LEU VAL HIS ASN HELIX 1 1 GLU A 18 ILE A 20 5 3 HELIX 2 2 GLY A 81 LEU A 83 5 3 SHEET 1 A 6 LYS A 25 THR A 29 0 SHEET 2 A 6 VAL A 36 ILE A 57 -1 O ALA A 37 N ALA A 28 SHEET 3 A 6 GLU A 60 THR A 64 -1 O ILE A 62 N LEU A 55 SHEET 4 A 6 PHE A 2 VAL A 3 -1 N VAL A 3 O LYS A 63 SHEET 5 A 6 VAL A 96 VAL A 118 -1 O TYR A 114 N PHE A 2 SHEET 6 A 6 LYS A 88 LEU A 90 -1 N LEU A 89 O LEU A 97 SHEET 1 B 4 LYS A 25 THR A 29 0 SHEET 2 B 4 VAL A 36 ILE A 57 -1 O ALA A 37 N ALA A 28 SHEET 3 B 4 VAL A 96 VAL A 118 -1 O ALA A 107 N THR A 50 SHEET 4 B 4 LYS A 88 LEU A 90 -1 N LEU A 89 O LEU A 97 SHEET 1 C 2 MET A 7 LEU A 9 0 SHEET 2 C 2 LEU A 14 ALA A 16 -1 O VAL A 15 N ILE A 8 SHEET 1 D 2 PRO A 69 VAL A 72 0 SHEET 2 D 2 GLY A 76 GLU A 79 -1 O VAL A 78 N PHE A 70 SHEET 1 E 2 THR A 123 VAL A 126 0 SHEET 2 E 2 VAL A 131 HIS A 134 -1 O VAL A 131 N VAL A 126 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1