HEADER TRANSCRIPTION 20-AUG-12 2LXD TITLE BACKBONE 1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR LMO2(LIM2)- TITLE 2 LDB1(LID) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHOMBOTIN-2,LIM DOMAIN-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 84-156,UNP RESIDUES 226-375; COMPND 5 SYNONYM: CYSTEINE-RICH PROTEIN TTG-2,LIM DOMAIN ONLY PROTEIN 2,LMO-2, COMPND 6 T-CELL TRANSLOCATION PROTEIN 2,LDB-1,CARBOXYL-TERMINAL LIM DOMAIN- COMPND 7 BINDING PROTEIN 2,CLIM-2,LIM DOMAIN-BINDING FACTOR CLIM2,MLDB1, COMPND 8 NUCLEAR LIM INTERACTOR; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: FUSION PROTEIN OF RHOMBOTIN-2, LINKER, LIM DOMAIN- COMPND 12 BINDING PROTEIN 1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LMO2, RBTN-2, RBTN2, RHOM-2, LDB1, NLI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-2T KEYWDS LIM, LDB1, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.DASTMALCHI,L.WILKINSON-WHITE,A.H.KWAN,R.GAMSJAEGER,J.P.MACKAY, AUTHOR 2 J.M.MATTHEWS REVDAT 4 14-JUN-23 2LXD 1 REMARK REVDAT 3 24-AUG-22 2LXD 1 JRNL REMARK LINK REVDAT 2 15-JAN-20 2LXD 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV REVDAT 1 12-SEP-12 2LXD 0 SPRSDE 12-SEP-12 2LXD 2L3K JRNL AUTH S.DASTMALCHI,L.WILKINSON-WHITE,A.H.KWAN,R.GAMSJAEGER, JRNL AUTH 2 J.P.MACKAY,J.M.MATTHEWS JRNL TITL SOLUTION STRUCTURE OF A TETHERED LMO2(LIM2) /LDB1(LID) JRNL TITL 2 COMPLEX. JRNL REF PROTEIN SCI. V. 21 1768 2012 JRNL REFN ESSN 1469-896X JRNL PMID 22936624 JRNL DOI 10.1002/PRO.2153 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.E.WILKINSON-WHITE,S.DASTMALCHI,A.H.KWAN,D.P.RYAN, REMARK 1 AUTH 2 J.P.MACKAY,J.M.MATTHEWS REMARK 1 TITL 1H, 15N AND 13C ASSIGNMENTS OF AN INTRAMOLECULAR REMARK 1 TITL 2 LMO2-LIM2/LDB1-LID COMPLEX REMARK 1 REF BIOMOL.NMR ASSIGN. V. 4 203 2010 REMARK 1 REFN ISSN 1874-2718 REMARK 1 PMID 20563763 REMARK 1 DOI 10.1007/S12104-010-9240-Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY 3.113, CYANA, CNS REMARK 3 AUTHORS : GODDARD (SPARKY), REMARK 3 BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI, REMARK 3 NILGES, PANNU,READ,RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CYANA, CNS REMARK 4 REMARK 4 2LXD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000102950. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 865 UM [U-100% 13C; U-100% 15N] REMARK 210 FLIC-1, 17 UM DSS-2, 5 % D2O-3, REMARK 210 20 MM MES-4, 1 MM DTT-5, 95 % REMARK 210 H2O-6, 150 MM NACL-7, 95% H2O/5% REMARK 210 D2O; 630 UM FLIC-8, 17 UM DSS-9, REMARK 210 1 MM DTT-10, 5 % D2O-11, 20 MM REMARK 210 MES-12, 95 % H2O-13, 150 MM NACL- REMARK 210 14, 95% H2O/5% D2O; 865 UM [U- REMARK 210 100% 13C; U-100% 15N] FLIC-15, REMARK 210 17 UM DSS-16, 100 % D2O-17, 20 REMARK 210 MM MES-18, 1 MM DTT-19, 150 MM REMARK 210 NACL-20, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D HNCO; REMARK 210 3D HN(CO)CA; 3D HNHA; 3D HBHA(CO) REMARK 210 NH; 3D HCCH-TOCSY; 2D 1H-13C REMARK 210 HSQC; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-1H TOCSY; 2D 1H-1H REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.113, TOPSPIN 2.1.B9, REMARK 210 TALOS 2009.215.15.29 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 20 -75.37 55.34 REMARK 500 1 GLU A 22 -85.05 34.28 REMARK 500 1 SER A 57 -69.84 -109.30 REMARK 500 1 ASP A 58 -161.12 -120.37 REMARK 500 1 SER A 81 125.90 62.75 REMARK 500 1 ASN A 118 126.70 63.25 REMARK 500 2 ALA A 20 -80.79 54.48 REMARK 500 2 GLU A 22 -85.47 34.01 REMARK 500 2 SER A 57 -73.85 -107.66 REMARK 500 2 ASP A 58 -166.94 -120.35 REMARK 500 2 MET A 94 -82.59 40.97 REMARK 500 2 GLU A 97 149.57 60.68 REMARK 500 2 ARG A 108 128.34 64.59 REMARK 500 2 THR A 112 109.04 41.49 REMARK 500 2 GLN A 113 131.95 64.41 REMARK 500 2 ALA A 116 123.69 63.10 REMARK 500 3 ALA A 20 3.12 -67.61 REMARK 500 3 MET A 23 135.44 63.63 REMARK 500 3 ASP A 58 -158.89 -116.35 REMARK 500 3 MET A 94 129.24 -18.60 REMARK 500 3 ARG A 108 -58.89 -122.09 REMARK 500 3 ASN A 118 128.11 63.09 REMARK 500 4 PHE A 5 123.87 63.53 REMARK 500 4 ASP A 15 53.17 -90.79 REMARK 500 4 PHE A 37 57.62 -90.46 REMARK 500 4 SER A 57 -73.89 -106.38 REMARK 500 4 ASP A 58 -163.37 -120.49 REMARK 500 4 MET A 94 105.78 40.76 REMARK 500 4 ILE A 106 167.89 47.61 REMARK 500 4 ASN A 118 125.43 63.14 REMARK 500 5 ASP A 15 52.29 -91.71 REMARK 500 5 ALA A 20 -75.84 55.44 REMARK 500 5 GLU A 22 -87.92 32.61 REMARK 500 5 MET A 23 76.69 45.55 REMARK 500 5 SER A 57 -75.54 -105.50 REMARK 500 5 ASP A 58 -167.16 -120.43 REMARK 500 5 ASP A 115 127.72 63.67 REMARK 500 5 ASN A 118 125.07 63.98 REMARK 500 6 ASP A 15 49.52 -90.70 REMARK 500 6 MET A 23 88.04 46.43 REMARK 500 6 SER A 57 -58.76 -120.01 REMARK 500 6 ASP A 58 -163.13 -120.21 REMARK 500 6 SER A 78 -51.07 70.68 REMARK 500 6 MET A 94 105.37 40.79 REMARK 500 6 ILE A 106 173.70 47.87 REMARK 500 6 ASP A 115 125.25 62.97 REMARK 500 6 ASN A 118 126.18 63.65 REMARK 500 6 ASP A 121 -42.32 -133.64 REMARK 500 7 ARG A 3 105.41 40.49 REMARK 500 7 GLN A 7 157.39 61.07 REMARK 500 REMARK 500 THIS ENTRY HAS 165 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 11 SG REMARK 620 2 CYS A 14 SG 108.7 REMARK 620 3 HIS A 33 ND1 100.8 105.2 REMARK 620 4 CYS A 36 SG 116.2 112.6 112.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 39 SG REMARK 620 2 CYS A 42 SG 117.4 REMARK 620 3 CYS A 61 SG 118.7 113.8 REMARK 620 4 ASP A 64 OD1 99.7 103.5 98.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16779 RELATED DB: BMRB DBREF 2LXD A 1 73 UNP P25801 RBTN2_MOUSE 84 156 DBREF 2LXD A 84 123 UNP P70662 LDB1_MOUSE 336 375 SEQADV 2LXD GLY A -1 UNP P25801 EXPRESSION TAG SEQADV 2LXD SER A 0 UNP P25801 EXPRESSION TAG SEQADV 2LXD SER A 47 UNP P25801 CYS 130 ENGINEERED MUTATION SEQADV 2LXD GLY A 74 UNP P25801 LINKER SEQADV 2LXD SER A 75 UNP P25801 LINKER SEQADV 2LXD GLY A 76 UNP P25801 LINKER SEQADV 2LXD GLY A 77 UNP P25801 LINKER SEQADV 2LXD SER A 78 UNP P25801 LINKER SEQADV 2LXD GLY A 79 UNP P25801 LINKER SEQADV 2LXD GLY A 80 UNP P25801 LINKER SEQADV 2LXD SER A 81 UNP P25801 LINKER SEQADV 2LXD GLY A 82 UNP P25801 LINKER SEQADV 2LXD GLY A 83 UNP P25801 LINKER SEQRES 1 A 125 GLY SER TYR LEU ARG LEU PHE GLY GLN ASP GLY LEU CYS SEQRES 2 A 125 ALA SER CYS ASP LYS ARG ILE ARG ALA TYR GLU MET THR SEQRES 3 A 125 MET ARG VAL LYS ASP LYS VAL TYR HIS LEU GLU CYS PHE SEQRES 4 A 125 LYS CYS ALA ALA CYS GLN LYS HIS PHE SER VAL GLY ASP SEQRES 5 A 125 ARG TYR LEU LEU ILE ASN SER ASP ILE VAL CYS GLU GLN SEQRES 6 A 125 ASP ILE TYR GLU TRP THR LYS ILE ASN GLY GLY SER GLY SEQRES 7 A 125 GLY SER GLY GLY SER GLY GLY ASP VAL MET VAL VAL GLY SEQRES 8 A 125 GLU PRO THR LEU MET GLY GLY GLU PHE GLY ASP GLU ASP SEQRES 9 A 125 GLU ARG LEU ILE THR ARG LEU GLU ASN THR GLN PHE ASP SEQRES 10 A 125 ALA ALA ASN GLY ILE ASP ASP GLU HET ZN A 201 1 HET ZN A 202 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 1 ASP A 64 GLY A 73 1 10 HELIX 2 2 GLU A 101 ILE A 106 1 6 SHEET 1 A 3 ILE A 59 VAL A 60 0 SHEET 2 A 3 ARG A 51 LEU A 54 -1 N LEU A 53 O VAL A 60 SHEET 3 A 3 MET A 86 VAL A 87 -1 O MET A 86 N TYR A 52 LINK SG CYS A 11 ZN ZN A 201 1555 1555 2.23 LINK SG CYS A 14 ZN ZN A 201 1555 1555 2.29 LINK ND1 HIS A 33 ZN ZN A 201 1555 1555 2.08 LINK SG CYS A 36 ZN ZN A 201 1555 1555 2.34 LINK SG CYS A 39 ZN ZN A 202 1555 1555 2.30 LINK SG CYS A 42 ZN ZN A 202 1555 1555 2.31 LINK SG CYS A 61 ZN ZN A 202 1555 1555 2.28 LINK OD1 ASP A 64 ZN ZN A 202 1555 1555 1.93 SITE 1 AC1 4 CYS A 11 CYS A 14 HIS A 33 CYS A 36 SITE 1 AC2 4 CYS A 39 CYS A 42 CYS A 61 ASP A 64 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1