HEADER PROTEIN TRANSPORT 29-AUG-12 2LXM TITLE LIP5-CHMP5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VTA1 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-168; COMPND 5 SYNONYM: DOPAMINE-RESPONSIVE GENE 1 PROTEIN, DRG-1, LYST-INTERACTING COMPND 6 PROTEIN 5, LIP5, SKD1-BINDING PROTEIN 1, SBP1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CHARGED MULTIVESICULAR BODY PROTEIN 5; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 139-195; COMPND 12 SYNONYM: CHROMATIN-MODIFYING PROTEIN 5, SNF7 DOMAIN-CONTAINING COMPND 13 PROTEIN 2, VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 60, VPS60, COMPND 14 HVPS60; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: C6ORF55, HSPC228, MY012, VTA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: C9ORF83, CGI-34, CHMP5, HSPC177, PNAS-114, PNAS-2, SNF7DC2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET16B KEYWDS MIT, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.J.SKALICKY,W.I.SUNDQUIST REVDAT 4 14-JUN-23 2LXM 1 REMARK SEQADV REVDAT 3 27-APR-16 2LXM 1 REMARK SEQADV SEQRES ATOM REVDAT 2 16-JAN-13 2LXM 1 JRNL REVDAT 1 28-NOV-12 2LXM 0 JRNL AUTH J.J.SKALICKY,J.ARII,D.M.WENZEL,W.M.STUBBLEFIELD,A.KATSUYAMA, JRNL AUTH 2 N.T.UTER,M.BAJOREK,D.G.MYSZKA,W.I.SUNDQUIST JRNL TITL INTERACTIONS OF THE HUMAN LIP5 REGULATORY PROTEIN WITH JRNL TITL 2 ENDOSOMAL SORTING COMPLEXES REQUIRED FOR TRANSPORT. JRNL REF J.BIOL.CHEM. V. 287 43910 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 23105106 JRNL DOI 10.1074/JBC.M112.417899 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, XPLOR-NIH REMARK 3 AUTHORS : GODDARD (SPARKY), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-12. REMARK 100 THE DEPOSITION ID IS D_1000102959. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 75 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 LIP5(1-168), 0.5 MM [U-100% 13C; REMARK 210 U-100% 15N] CHMP5(139-195), 25 REMARK 210 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 0.5 MM DTT, 0.1 REMARK 210 MM EDTA, 92% H2O/8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -13C NOESY AROMATIC; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HNHA; 3D H(CCO)NH; 3D 1H-15N REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DIRECT DRIVE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 ALA A 164 REMARK 465 GLY A 165 REMARK 465 PRO A 166 REMARK 465 VAL A 167 REMARK 465 GLY A 168 REMARK 465 GLY B 137 REMARK 465 HIS B 138 REMARK 465 MET B 139 REMARK 465 GLU B 140 REMARK 465 ASP B 141 REMARK 465 ALA B 142 REMARK 465 ASN B 143 REMARK 465 GLU B 144 REMARK 465 ILE B 145 REMARK 465 GLN B 146 REMARK 465 GLU B 147 REMARK 465 ALA B 148 REMARK 465 LEU B 149 REMARK 465 SER B 150 REMARK 465 ARG B 151 REMARK 465 SER B 152 REMARK 465 TYR B 153 REMARK 465 PRO B 190 REMARK 465 ALA B 191 REMARK 465 ILE B 192 REMARK 465 PRO B 193 REMARK 465 GLU B 194 REMARK 465 GLY B 195 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 150 H ASN A 154 1.55 REMARK 500 O THR A 129 H GLY A 132 1.58 REMARK 500 O HIS A 27 H ASP A 31 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 9 131.81 -38.08 REMARK 500 1 ASP A 50 -148.75 -142.97 REMARK 500 1 SER A 51 14.31 157.44 REMARK 500 1 LYS A 52 -139.73 -125.85 REMARK 500 1 THR A 53 113.43 38.61 REMARK 500 1 ASN A 77 113.63 50.58 REMARK 500 1 GLU A 133 -127.50 -77.85 REMARK 500 1 LEU A 134 101.89 81.64 REMARK 500 1 PRO A 162 166.60 -46.62 REMARK 500 2 PHE A 14 43.01 -101.88 REMARK 500 2 LYS A 52 89.55 59.31 REMARK 500 2 PRO B 156 -168.35 -54.24 REMARK 500 3 PRO A 8 173.86 -54.55 REMARK 500 3 PRO A 9 162.10 -47.24 REMARK 500 3 PHE A 14 33.60 -95.72 REMARK 500 3 ILE A 49 -85.92 -84.03 REMARK 500 3 ASP A 50 135.78 55.17 REMARK 500 3 ASP A 76 -59.16 -127.36 REMARK 500 3 ASN A 77 105.63 46.27 REMARK 500 3 VAL A 130 -15.34 -46.61 REMARK 500 3 PHE A 131 22.41 -78.71 REMARK 500 3 SER B 180 67.01 -175.30 REMARK 500 4 PRO A 11 153.35 -47.58 REMARK 500 4 ARG A 30 -64.79 -90.66 REMARK 500 4 ASP A 50 -176.78 -48.16 REMARK 500 4 SER A 51 58.29 -162.46 REMARK 500 4 LYS A 52 101.23 63.34 REMARK 500 4 GLU A 133 66.26 -102.02 REMARK 500 4 PRO B 156 167.15 -45.90 REMARK 500 4 SER B 180 61.25 -179.52 REMARK 500 5 ASP A 50 -135.37 -153.04 REMARK 500 5 SER A 51 -35.85 130.62 REMARK 500 5 ASN A 77 105.83 48.49 REMARK 500 5 THR A 81 5.23 -69.13 REMARK 500 5 ASP A 136 -36.20 -39.24 REMARK 500 5 PRO B 156 -158.63 -71.74 REMARK 500 5 ASP B 179 92.09 -40.98 REMARK 500 5 SER B 180 -143.61 -168.68 REMARK 500 6 PRO A 9 168.29 -39.18 REMARK 500 6 PRO A 11 157.72 -48.91 REMARK 500 6 LYS A 15 -17.04 -46.89 REMARK 500 6 ARG A 30 -62.82 -106.69 REMARK 500 6 SER A 51 -24.70 176.63 REMARK 500 6 THR A 53 134.05 -178.00 REMARK 500 6 ASP A 76 -100.58 91.70 REMARK 500 6 ASN A 77 142.33 90.01 REMARK 500 6 GLU A 133 -92.94 -112.43 REMARK 500 6 LEU A 134 103.08 66.87 REMARK 500 6 PRO B 156 -179.22 -67.22 REMARK 500 6 ASP B 177 120.82 49.01 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18682 RELATED DB: BMRB REMARK 900 RELATED ID: 2LXL RELATED DB: PDB DBREF 2LXM A 1 168 UNP Q9NP79 VTA1_HUMAN 1 168 DBREF 2LXM B 139 195 UNP Q9NZZ3 CHMP5_HUMAN 139 195 SEQADV 2LXM GLY B 137 UNP Q9NZZ3 EXPRESSION TAG SEQADV 2LXM HIS B 138 UNP Q9NZZ3 EXPRESSION TAG SEQRES 1 A 168 MET ALA ALA LEU ALA PRO LEU PRO PRO LEU PRO ALA GLN SEQRES 2 A 168 PHE LYS SER ILE GLN HIS HIS LEU ARG THR ALA GLN GLU SEQRES 3 A 168 HIS ASP LYS ARG ASP PRO VAL VAL ALA TYR TYR CYS ARG SEQRES 4 A 168 LEU TYR ALA MET GLN THR GLY MET LYS ILE ASP SER LYS SEQRES 5 A 168 THR PRO GLU CYS ARG LYS PHE LEU SER LYS LEU MET ASP SEQRES 6 A 168 GLN LEU GLU ALA LEU LYS LYS GLN LEU GLY ASP ASN GLU SEQRES 7 A 168 ALA ILE THR GLN GLU ILE VAL GLY CYS ALA HIS LEU GLU SEQRES 8 A 168 ASN TYR ALA LEU LYS MET PHE LEU TYR ALA ASP ASN GLU SEQRES 9 A 168 ASP ARG ALA GLY ARG PHE HIS LYS ASN MET ILE LYS SER SEQRES 10 A 168 PHE TYR THR ALA SER LEU LEU ILE ASP VAL ILE THR VAL SEQRES 11 A 168 PHE GLY GLU LEU THR ASP GLU ASN VAL LYS HIS ARG LYS SEQRES 12 A 168 TYR ALA ARG TRP LYS ALA THR TYR ILE HIS ASN CYS LEU SEQRES 13 A 168 LYS ASN GLY GLU THR PRO GLN ALA GLY PRO VAL GLY SEQRES 1 B 59 GLY HIS MET GLU ASP ALA ASN GLU ILE GLN GLU ALA LEU SEQRES 2 B 59 SER ARG SER TYR GLY THR PRO GLU LEU ASP GLU ASP ASP SEQRES 3 B 59 LEU GLU ALA GLU LEU ASP ALA LEU GLY ASP GLU LEU LEU SEQRES 4 B 59 ALA ASP GLU ASP SER SER TYR LEU ASP GLU ALA ALA SER SEQRES 5 B 59 ALA PRO ALA ILE PRO GLU GLY HELIX 1 1 PRO A 11 GLN A 13 5 3 HELIX 2 2 PHE A 14 ASP A 31 1 18 HELIX 3 3 ASP A 31 ASP A 50 1 20 HELIX 4 4 THR A 53 GLY A 75 1 23 HELIX 5 5 ASN A 77 GLN A 82 1 6 HELIX 6 6 GLN A 82 GLY A 108 1 27 HELIX 7 7 HIS A 111 VAL A 130 1 20 HELIX 8 8 THR A 135 GLY A 159 1 25 HELIX 9 9 ASP B 159 ASP B 177 1 19 HELIX 10 10 SER B 180 ALA B 189 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1