HEADER TRANSPORT PROTEIN 11-SEP-12 2LY3 TITLE SOLUTION STRUCTURE OF TAMA POTRA DOMAIN I COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLOCATION AND ASSEMBLY MODULE TAMA; COMPND 3 CHAIN: 1; COMPND 4 FRAGMENT: C-TERMINAL BETA-SIGNAL-LIKE MOTIF; COMPND 5 SYNONYM: AUTOTRANSPORTER ASSEMBLY FACTOR TAMA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: TAMA, YFTM, YTFM, B4220, JW4179; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21D KEYWDS TAMA, POTRA, TAM, AUTOTRANSPORTER SECRETION, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.HEADEY,M.BELOUSOFF,T.LITHGOW REVDAT 3 15-MAY-24 2LY3 1 REMARK REVDAT 2 14-JUN-23 2LY3 1 REMARK SEQADV REVDAT 1 12-MAR-14 2LY3 0 JRNL AUTH J.SELKRIG,S.HEADEY,M.BELOUSOFF,N.CELIK,M.PHAN,M.SCHEMBRI, JRNL AUTH 2 M.SCANLON,T.LITHGOW JRNL TITL THE C-TERMINAL BETA-SIGNAL-LIKE MOTIF OF TAMB FACILITATES JRNL TITL 2 EFFICIENT AUTOTRANSPORTER SECRETION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.0, CNS 1.3, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS), GUNTERT, MUMENTHALER REMARK 3 AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LY3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000102976. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.8 MM [U-99% 13C; U-99% 15N] REMARK 210 TAMA DOMAIN I, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HNCACB; REMARK 210 3D HBHA(CO)NH; 3D H(CCCO)NH; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D (H)C(CCO)NH; 3D 1H- REMARK 210 13C NOESY AROMATIC; 2D (HB) REMARK 210 CB(CGCD)HD; 2D (HB)CB(CGCDCE)HE; REMARK 210 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.0, ATNOSCANDID 2.0.2, REMARK 210 CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, DGSA REMARK 210 -DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE 1 65 H LEU 1 69 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU 1 47 0.86 -69.00 REMARK 500 1 SER 1 48 9.59 -62.64 REMARK 500 1 ASP 1 49 33.83 -77.67 REMARK 500 1 GLU 1 50 73.34 87.76 REMARK 500 1 GLN 1 76 54.28 -157.55 REMARK 500 1 PRO 1 86 75.20 -100.38 REMARK 500 1 THR 1 99 87.35 -158.60 REMARK 500 1 PRO 1 100 -77.16 -89.62 REMARK 500 1 HIS 1 105 79.65 60.60 REMARK 500 1 HIS 1 107 -70.58 67.95 REMARK 500 1 HIS 1 109 91.56 60.52 REMARK 500 2 GLU 1 47 0.92 -63.64 REMARK 500 2 SER 1 48 9.63 -59.87 REMARK 500 2 ASP 1 49 33.98 -77.84 REMARK 500 2 GLU 1 50 73.00 87.96 REMARK 500 2 GLN 1 76 54.57 -153.16 REMARK 500 2 PRO 1 86 73.46 -100.74 REMARK 500 2 PRO 1 100 -84.97 -88.21 REMARK 500 2 HIS 1 107 158.27 60.45 REMARK 500 3 ASN 1 23 45.65 -102.99 REMARK 500 3 ILE 1 46 161.72 -44.56 REMARK 500 3 SER 1 48 9.77 -62.86 REMARK 500 3 ASP 1 49 33.93 -73.41 REMARK 500 3 GLU 1 50 66.33 87.95 REMARK 500 3 GLN 1 76 54.58 -161.54 REMARK 500 3 PRO 1 86 67.05 -102.72 REMARK 500 3 PRO 1 100 -76.77 -89.87 REMARK 500 3 HIS 1 107 84.05 60.14 REMARK 500 4 ASN 1 23 79.04 58.29 REMARK 500 4 ILE 1 46 161.33 -49.79 REMARK 500 4 SER 1 48 9.87 -65.04 REMARK 500 4 ASP 1 49 34.10 -74.68 REMARK 500 4 GLU 1 50 70.49 87.94 REMARK 500 4 TYR 1 75 -54.71 -120.92 REMARK 500 4 GLN 1 76 54.57 -147.49 REMARK 500 4 PRO 1 86 69.31 -103.36 REMARK 500 4 PRO 1 100 -84.32 -87.28 REMARK 500 4 HIS 1 105 99.81 -164.96 REMARK 500 4 HIS 1 106 -47.29 -148.60 REMARK 500 5 GLU 1 47 1.76 -69.01 REMARK 500 5 SER 1 48 9.60 -55.13 REMARK 500 5 ASP 1 49 34.04 -77.84 REMARK 500 5 GLU 1 50 74.99 88.07 REMARK 500 5 GLN 1 76 54.43 -145.47 REMARK 500 5 PRO 1 86 71.54 -101.33 REMARK 500 5 THR 1 99 89.58 -154.19 REMARK 500 5 PRO 1 100 -82.96 -88.89 REMARK 500 5 HIS 1 106 93.89 60.75 REMARK 500 6 ASN 1 23 47.07 -105.13 REMARK 500 6 SER 1 48 9.78 -64.15 REMARK 500 REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18707 RELATED DB: BMRB DBREF 2LY3 1 22 102 UNP P0ADE4 TAMA_ECOLI 22 102 SEQADV 2LY3 LEU 1 103 UNP P0ADE4 EXPRESSION TAG SEQADV 2LY3 GLU 1 104 UNP P0ADE4 EXPRESSION TAG SEQADV 2LY3 HIS 1 105 UNP P0ADE4 EXPRESSION TAG SEQADV 2LY3 HIS 1 106 UNP P0ADE4 EXPRESSION TAG SEQADV 2LY3 HIS 1 107 UNP P0ADE4 EXPRESSION TAG SEQADV 2LY3 HIS 1 108 UNP P0ADE4 EXPRESSION TAG SEQADV 2LY3 HIS 1 109 UNP P0ADE4 EXPRESSION TAG SEQADV 2LY3 HIS 1 110 UNP P0ADE4 EXPRESSION TAG SEQRES 1 1 89 ALA ASN VAL ARG LEU GLN VAL GLU GLY LEU SER GLY GLN SEQRES 2 1 89 LEU GLU LYS ASN VAL ARG ALA GLN LEU SER THR ILE GLU SEQRES 3 1 89 SER ASP GLU VAL THR PRO ASP ARG ARG PHE ARG ALA ARG SEQRES 4 1 89 VAL ASP ASP ALA ILE ARG GLU GLY LEU LYS ALA LEU GLY SEQRES 5 1 89 TYR TYR GLN PRO THR ILE GLU PHE ASP LEU ARG PRO PRO SEQRES 6 1 89 PRO LYS LYS GLY ARG GLN VAL LEU ILE ALA LYS VAL THR SEQRES 7 1 89 PRO GLY VAL LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 GLY 1 33 ILE 1 46 1 14 HELIX 2 2 ASP 1 54 ALA 1 71 1 18 SHEET 1 A 3 GLN 1 27 GLU 1 29 0 SHEET 2 A 3 VAL 1 93 THR 1 99 1 O VAL 1 98 N GLU 1 29 SHEET 3 A 3 THR 1 78 ARG 1 84 -1 N ARG 1 84 O VAL 1 93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1