HEADER NUCLEAR PROTEIN/ANTITUMOUR PROTEIN 12-SEP-12 2LY4 TITLE HMGB1-FACILITATED P53 DNA BINDING OCCURS VIA HMG-BOX/P53 TITLE 2 TRANSACTIVATION DOMAIN INTERACTION AND IS REGULATED BY THE ACIDIC TITLE 3 TAIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIGH MOBILITY GROUP PROTEIN B1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HIGH MOBILITY GROUP PROTEIN 1, HMG-1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: ANTIGEN NY-CO-13, PHOSPHOPROTEIN P53, TUMOR SUPPRESSOR P53; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HMG1, HMGB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PT7-7 HMG1-A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: P53, TP53; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET16B-P53(1-93) KEYWDS HMG, P53, TAD, NUCLEAR PROTEIN-ANTITUMOUR PROTEIN COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.P.ROWELL,K.L.SIMPSON,K.STOTT,M.WATSON,J.O.THOMAS REVDAT 3 01-MAY-24 2LY4 1 REMARK REVDAT 2 26-DEC-12 2LY4 1 JRNL REVDAT 1 31-OCT-12 2LY4 0 JRNL AUTH J.P.ROWELL,K.L.SIMPSON,K.STOTT,M.WATSON,J.O.THOMAS JRNL TITL HMGB1-FACILITATED P53 DNA BINDING OCCURS VIA HMG-BOX/P53 JRNL TITL 2 TRANSACTIVATION DOMAIN INTERACTION, REGULATED BY THE ACIDIC JRNL TITL 3 TAIL. JRNL REF STRUCTURE V. 20 2014 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 23063560 JRNL DOI 10.1016/J.STR.2012.09.004 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AZARA, CNS REMARK 3 AUTHORS : BOUCHER (AZARA), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000102977. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MM SODIUM PHOSPHATE, 1 MM REMARK 210 EDTA, 1 MM DTT, 0.5 MM PMSF, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-13C NOESY; 3D 1H-13C NOESY, REMARK 210 X-FILTERED; 3D HNCA; 3D HN(CO) REMARK 210 CA; 3D HBHA(CO)NH; 3D HNCO; 3D REMARK 210 C(CO)NH; 3D HCCH-TOCSY; 3D 1H- REMARK 210 15N TOCSY; 3D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, ANALYSIS REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 5 REMARK 465 SER B 6 REMARK 465 ASP B 7 REMARK 465 PRO B 8 REMARK 465 SER B 9 REMARK 465 VAL B 10 REMARK 465 GLU B 11 REMARK 465 PRO B 12 REMARK 465 PRO B 13 REMARK 465 ASP B 61 REMARK 465 GLU B 62 REMARK 465 ALA B 63 REMARK 465 PRO B 64 REMARK 465 ARG B 65 REMARK 465 MET B 66 REMARK 465 PRO B 67 REMARK 465 GLU B 68 REMARK 465 ALA B 69 REMARK 465 ALA B 70 REMARK 465 PRO B 71 REMARK 465 PRO B 72 REMARK 465 VAL B 73 REMARK 465 ALA B 74 REMARK 465 PRO B 75 REMARK 465 ALA B 76 REMARK 465 PRO B 77 REMARK 465 ALA B 78 REMARK 465 ALA B 79 REMARK 465 PRO B 80 REMARK 465 THR B 81 REMARK 465 PRO B 82 REMARK 465 ALA B 83 REMARK 465 ALA B 84 REMARK 465 PRO B 85 REMARK 465 ALA B 86 REMARK 465 PRO B 87 REMARK 465 ALA B 88 REMARK 465 PRO B 89 REMARK 465 SER B 90 REMARK 465 TRP B 91 REMARK 465 PRO B 92 REMARK 465 LEU B 93 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 2 OD1 ASP A 4 1.56 REMARK 500 HH12 ARG A 9 OE1 GLU A 24 1.57 REMARK 500 HZ2 LYS A 67 OE1 GLU A 71 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 8 -167.98 -64.91 REMARK 500 1 PRO B 27 95.76 -66.33 REMARK 500 1 ASN B 30 -1.72 92.91 REMARK 500 1 VAL B 31 70.30 60.72 REMARK 500 1 MET B 44 -71.34 -99.60 REMARK 500 2 PRO B 27 95.57 -69.56 REMARK 500 2 ASN B 30 27.44 -151.85 REMARK 500 2 VAL B 31 53.73 37.35 REMARK 500 2 MET B 40 -50.65 -131.17 REMARK 500 2 MET B 44 -47.50 -131.10 REMARK 500 2 TRP B 53 -52.40 -131.85 REMARK 500 3 MET A 12 153.67 -44.45 REMARK 500 3 GLN B 16 75.79 55.42 REMARK 500 3 ASN B 30 -36.56 178.99 REMARK 500 3 VAL B 31 91.39 69.15 REMARK 500 3 ALA B 39 -171.08 66.76 REMARK 500 3 PRO B 47 -2.30 -59.36 REMARK 500 3 THR B 55 88.88 -174.90 REMARK 500 3 GLU B 56 93.34 -165.37 REMARK 500 3 PRO B 58 -16.63 -47.81 REMARK 500 4 PRO B 27 93.84 -66.38 REMARK 500 4 ASN B 30 24.15 -172.47 REMARK 500 4 VAL B 31 82.17 48.19 REMARK 500 4 LEU B 43 -70.69 -106.81 REMARK 500 4 MET B 44 -65.81 -130.75 REMARK 500 4 TRP B 53 -30.54 -130.98 REMARK 500 5 MET A 12 -156.03 36.57 REMARK 500 5 LYS A 81 84.00 58.25 REMARK 500 5 GLU B 17 -71.83 -87.42 REMARK 500 5 ASN B 30 137.64 173.23 REMARK 500 5 LEU B 32 108.56 67.11 REMARK 500 5 MET B 40 -44.44 -131.49 REMARK 500 5 MET B 44 -71.21 -90.71 REMARK 500 5 PRO B 47 13.23 -67.12 REMARK 500 6 LYS A 11 28.44 2.95 REMARK 500 6 LYS A 81 128.51 63.18 REMARK 500 6 LYS B 24 24.94 -79.16 REMARK 500 6 PRO B 27 96.57 -65.28 REMARK 500 6 VAL B 31 61.02 64.31 REMARK 500 6 MET B 44 -71.73 -105.27 REMARK 500 6 PHE B 54 -57.58 -136.34 REMARK 500 7 MET A 12 -154.45 35.26 REMARK 500 7 GLU B 17 -70.49 -74.14 REMARK 500 7 GLU B 28 46.38 -173.78 REMARK 500 7 ASN B 29 -44.10 -130.44 REMARK 500 7 ASN B 30 -35.13 167.42 REMARK 500 7 VAL B 31 100.06 70.29 REMARK 500 7 PRO B 36 108.89 -58.31 REMARK 500 7 MET B 44 -71.75 -131.54 REMARK 500 8 LYS A 2 -0.86 -164.27 REMARK 500 REMARK 500 THIS ENTRY HAS 77 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18709 RELATED DB: BMRB DBREF 2LY4 A 1 83 UNP P09429 HMGB1_HUMAN 2 84 DBREF 2LY4 B 1 93 UNP P04637 P53_HUMAN 1 93 SEQRES 1 A 83 GLY LYS GLY ASP PRO LYS LYS PRO ARG GLY LYS MET SER SEQRES 2 A 83 SER TYR ALA PHE PHE VAL GLN THR CYS ARG GLU GLU HIS SEQRES 3 A 83 LYS LYS LYS HIS PRO ASP ALA SER VAL ASN PHE SER GLU SEQRES 4 A 83 PHE SER LYS LYS CYS SER GLU ARG TRP LYS THR MET SER SEQRES 5 A 83 ALA LYS GLU LYS GLY LYS PHE GLU ASP MET ALA LYS ALA SEQRES 6 A 83 ASP LYS ALA ARG TYR GLU ARG GLU MET LYS THR TYR ILE SEQRES 7 A 83 PRO PRO LYS GLY GLU SEQRES 1 B 93 MET GLU GLU PRO GLN SER ASP PRO SER VAL GLU PRO PRO SEQRES 2 B 93 LEU SER GLN GLU THR PHE SER ASP LEU TRP LYS LEU LEU SEQRES 3 B 93 PRO GLU ASN ASN VAL LEU SER PRO LEU PRO SER GLN ALA SEQRES 4 B 93 MET ASP ASP LEU MET LEU SER PRO ASP ASP ILE GLU GLN SEQRES 5 B 93 TRP PHE THR GLU ASP PRO GLY PRO ASP GLU ALA PRO ARG SEQRES 6 B 93 MET PRO GLU ALA ALA PRO PRO VAL ALA PRO ALA PRO ALA SEQRES 7 B 93 ALA PRO THR PRO ALA ALA PRO ALA PRO ALA PRO SER TRP SEQRES 8 B 93 PRO LEU HELIX 1 1 SER A 13 HIS A 30 1 18 HELIX 2 2 ASN A 36 THR A 50 1 15 HELIX 3 3 SER A 52 THR A 76 1 25 HELIX 4 4 SER B 46 GLU B 51 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1