data_2LY8 # _entry.id 2LY8 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LY8 pdb_00002ly8 10.2210/pdb2ly8/pdb RCSB RCSB102981 ? ? BMRB 18713 ? ? WWPDB D_1000102981 ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 18713 _pdbx_database_related.db_name BMRB _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LY8 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-09-13 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hong, J.' 1 'Feng, H.' 2 'Zhou, Z.' 3 'Ghirlando, R.' 4 'Bai, Y.' 5 # _citation.id primary _citation.title 'Identification of Functionally Conserved Regions in the Structure of the Chaperone/CenH3/H4 Complex.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 425 _citation.page_first 536 _citation.page_last 545 _citation.year 2013 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23178171 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2012.11.021 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hong, J.' 1 ? primary 'Feng, H.' 2 ? primary 'Zhou, Z.' 3 ? primary 'Ghirlando, R.' 4 ? primary 'Bai, Y.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Budding yeast chaperone Scm3' _entity.formula_weight 13717.882 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG ; _entity_poly.pdbx_seq_one_letter_code_can ;LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFGG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 ILE n 1 3 SER n 1 4 LYS n 1 5 ILE n 1 6 PRO n 1 7 PHE n 1 8 ALA n 1 9 ARG n 1 10 LEU n 1 11 VAL n 1 12 LYS n 1 13 GLU n 1 14 VAL n 1 15 THR n 1 16 ASP n 1 17 GLU n 1 18 PHE n 1 19 THR n 1 20 THR n 1 21 LYS n 1 22 ASP n 1 23 GLN n 1 24 ASP n 1 25 LEU n 1 26 ARG n 1 27 TRP n 1 28 GLN n 1 29 SER n 1 30 MET n 1 31 ALA n 1 32 ILE n 1 33 MET n 1 34 ALA n 1 35 LEU n 1 36 GLN n 1 37 GLU n 1 38 ALA n 1 39 SER n 1 40 GLU n 1 41 ALA n 1 42 TYR n 1 43 LEU n 1 44 VAL n 1 45 GLY n 1 46 LEU n 1 47 LEU n 1 48 GLU n 1 49 HIS n 1 50 THR n 1 51 ASN n 1 52 LEU n 1 53 LEU n 1 54 ALA n 1 55 LEU n 1 56 HIS n 1 57 LEU n 1 58 VAL n 1 59 PRO n 1 60 ARG n 1 61 GLY n 1 62 SER n 1 63 LYS n 1 64 ARG n 1 65 ILE n 1 66 SER n 1 67 GLY n 1 68 LEU n 1 69 ILE n 1 70 TYR n 1 71 GLU n 1 72 GLU n 1 73 VAL n 1 74 ARG n 1 75 ALA n 1 76 VAL n 1 77 LEU n 1 78 LYS n 1 79 SER n 1 80 PHE n 1 81 LEU n 1 82 GLU n 1 83 SER n 1 84 VAL n 1 85 ILE n 1 86 ARG n 1 87 ASP n 1 88 SER n 1 89 VAL n 1 90 THR n 1 91 TYR n 1 92 THR n 1 93 GLU n 1 94 HIS n 1 95 ALA n 1 96 LYS n 1 97 ARG n 1 98 LYS n 1 99 THR n 1 100 VAL n 1 101 THR n 1 102 SER n 1 103 LEU n 1 104 ASP n 1 105 VAL n 1 106 VAL n 1 107 TYR n 1 108 ALA n 1 109 LEU n 1 110 LYS n 1 111 ARG n 1 112 GLN n 1 113 GLY n 1 114 ARG n 1 115 THR n 1 116 LEU n 1 117 TYR n 1 118 GLY n 1 119 PHE n 1 120 GLY n 1 121 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Cse4p _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 204508 / S288c' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Saccharomyces cerevisiae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4932 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-CodonPlus-RIPL _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2LY8 _struct_ref.pdbx_db_accession 2LY8 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LY8 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 121 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2LY8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 121 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 121 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 3 '2D 1H-1H NOESY' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCACB' 1 5 1 '3D HNCO' 1 6 1 '3D HNCA' 1 7 1 '3D HN(CO)CA' 1 8 2 '3D HBHA(CO)NH' 1 9 2 '3D HCCH-TOCSY' 1 10 2 '3D 1H-15N NOESY' 1 11 2 '3D 1H-13C NOESY' 1 12 3 '2D 1H-1H NOESY' 1 13 2 '3D H(CCO)NH' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 5.4 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 308.1 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.8 mM [U-100% 15N] sC4, 0.8 mM [U-100% 13C; U-100% 15N] sC4, 0.8 mM [U-13C; U-15N; U-2H] sC4, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '0.8 mM [U-100% 13C; U-100% 15N] sC4, 100% D2O' 2 '100% D2O' '0.8 mM sC4, 100% D2O' 3 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker AVANCE 1 'Bruker Avance' 700 Bruker AVANCE 2 'Bruker Avance' 900 Bruker AVANCE 3 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2LY8 _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 30 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LY8 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LY8 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe updated 1 'Johnson, One Moon Scientific' 'chemical shift assignment' NMRView updated 2 'Schwieters, Kuszewski, Tjandra and Clore' 'structure solution' 'X-PLOR NIH' updated 3 'Cornilescu, Delaglio and Bax' 'data analysis' NMRDraw ? 4 'Laskowski and MacArthur' 'structure solution' ProcheckNMR updated 5 'Koradi, Billeter and Wuthrich' 'structure solution' MOLMOL ? 6 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'This is a structure of re-engineering single chain of Cse4-LVPRGS-H4' _exptl.entry_id 2LY8 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LY8 _struct.title 'The budding yeast chaperone Scm3 recognizes the partially unfolded dimer of the centromere-specific Cse4/H4 histone variant' _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LY8 _struct_keywords.pdbx_keywords CHAPERONE _struct_keywords.text 'centromere protein, CenH3 variants, Partially unfolded, CHAPERONE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 5 ? THR A 19 ? ILE A 5 THR A 19 1 ? 15 HELX_P HELX_P2 2 GLN A 28 ? ALA A 54 ? GLN A 28 ALA A 54 1 ? 27 HELX_P HELX_P3 3 LEU A 68 ? ALA A 95 ? LEU A 68 ALA A 95 1 ? 28 HELX_P HELX_P4 4 THR A 101 ? GLN A 112 ? THR A 101 GLN A 112 1 ? 12 HELX_P HELX_P5 5 ARG A 114 ? PHE A 119 ? ARG A 114 PHE A 119 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2LY8 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 GLN 23 23 23 GLN GLN A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 TRP 27 27 27 TRP TRP A . n A 1 28 GLN 28 28 28 GLN GLN A . n A 1 29 SER 29 29 29 SER SER A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 MET 33 33 33 MET MET A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 TYR 42 42 42 TYR TYR A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 PRO 59 59 59 PRO PRO A . n A 1 60 ARG 60 60 60 ARG ARG A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 ILE 65 65 65 ILE ILE A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 TYR 70 70 70 TYR TYR A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 SER 79 79 79 SER SER A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 SER 83 83 83 SER SER A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 SER 102 102 102 SER SER A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ASP 104 104 104 ASP ASP A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 TYR 107 107 107 TYR TYR A . n A 1 108 ALA 108 108 108 ALA ALA A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 THR 115 115 115 THR THR A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 PHE 119 119 119 PHE PHE A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 GLY 121 121 121 GLY GLY A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-12 2 'Structure model' 1 1 2013-01-30 3 'Structure model' 1 2 2013-02-20 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id sC4-1 0.8 ? mM '[U-100% 15N]' 1 sC4-2 0.8 ? mM '[U-100% 13C; U-100% 15N]' 1 sC4-3 0.8 ? mM '[U-13C; U-15N; U-2H]' 1 sC4-4 0.8 ? mM '[U-100% 13C; U-100% 15N]' 2 sC4-5 0.8 ? mM ? 3 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2LY8 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 3382 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 912 _pdbx_nmr_constraints.NOE_long_range_total_count 466 _pdbx_nmr_constraints.NOE_medium_range_total_count 1151 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 853 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 85 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 85 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A THR 92 ? ? H A ARG 97 ? ? 1.47 2 1 O A LYS 21 ? ? H A GLN 23 ? ? 1.59 3 2 H1 A LEU 1 ? ? H A ILE 2 ? ? 1.28 4 2 O A THR 92 ? ? H A ARG 97 ? ? 1.46 5 3 O A THR 92 ? ? H A ARG 97 ? ? 1.48 6 3 O A LYS 21 ? ? H A GLN 23 ? ? 1.58 7 4 O A THR 92 ? ? H A ARG 97 ? ? 1.48 8 4 O A LYS 21 ? ? H A GLN 23 ? ? 1.57 9 5 O A THR 92 ? ? H A ARG 97 ? ? 1.48 10 5 O A LYS 21 ? ? H A GLN 23 ? ? 1.56 11 6 O A THR 92 ? ? H A ARG 97 ? ? 1.48 12 6 O A LYS 21 ? ? H A GLN 23 ? ? 1.56 13 7 O A THR 92 ? ? H A ARG 97 ? ? 1.50 14 7 O A LYS 21 ? ? H A GLN 23 ? ? 1.58 15 8 O A THR 92 ? ? H A ARG 97 ? ? 1.48 16 9 O A THR 92 ? ? H A ARG 97 ? ? 1.47 17 9 O A LYS 21 ? ? H A GLN 23 ? ? 1.57 18 10 O A THR 92 ? ? H A ARG 97 ? ? 1.48 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 20 ? ? -44.57 -15.02 2 1 LYS A 21 ? ? -68.92 23.98 3 1 ASP A 22 ? ? -71.61 43.82 4 1 ASP A 24 ? ? -172.08 -1.39 5 1 HIS A 56 ? ? -142.01 -21.24 6 1 ARG A 64 ? ? -66.64 68.60 7 1 SER A 66 ? ? -161.43 72.64 8 1 LEU A 68 ? ? 47.99 106.31 9 1 LYS A 96 ? ? 32.49 35.27 10 1 THR A 115 ? ? 73.48 -22.63 11 1 LEU A 116 ? ? 47.44 23.80 12 1 TYR A 117 ? ? 50.56 12.75 13 2 THR A 20 ? ? -44.11 -15.61 14 2 LYS A 21 ? ? -69.33 25.35 15 2 ASP A 22 ? ? -72.79 43.62 16 2 THR A 50 ? ? -94.69 -145.35 17 2 ASN A 51 ? ? 62.11 -4.46 18 2 SER A 66 ? ? 77.33 -23.34 19 2 LYS A 96 ? ? 35.58 37.82 20 3 LYS A 4 ? ? 57.43 117.50 21 3 THR A 20 ? ? -44.73 -14.64 22 3 LYS A 21 ? ? -66.83 23.99 23 3 ASP A 22 ? ? -69.45 39.31 24 3 ASP A 24 ? ? -172.81 -0.13 25 3 ASN A 51 ? ? -178.31 -26.43 26 3 HIS A 56 ? ? -131.78 -30.31 27 3 ARG A 64 ? ? 56.90 -4.33 28 3 LYS A 96 ? ? 37.40 37.05 29 3 THR A 115 ? ? 83.77 -27.97 30 3 LEU A 116 ? ? 54.97 114.46 31 4 LYS A 4 ? ? 44.93 -131.02 32 4 THR A 20 ? ? -44.99 -15.34 33 4 LYS A 21 ? ? -70.77 23.73 34 4 ASP A 22 ? ? -71.47 43.40 35 4 ASP A 24 ? ? -172.81 -6.52 36 4 THR A 50 ? ? -104.11 -165.80 37 4 ASN A 51 ? ? 64.54 -28.73 38 4 ARG A 60 ? ? -111.28 57.53 39 4 LYS A 63 ? ? -178.47 -77.54 40 4 LYS A 96 ? ? 33.59 42.41 41 4 TYR A 117 ? ? -93.58 47.20 42 5 LYS A 4 ? ? 65.52 -73.88 43 5 THR A 20 ? ? -44.81 -14.79 44 5 LYS A 21 ? ? -68.54 24.36 45 5 ASP A 22 ? ? -71.22 43.79 46 5 ASP A 24 ? ? -170.98 -2.49 47 5 THR A 50 ? ? -51.99 97.37 48 5 HIS A 56 ? ? -172.87 13.42 49 5 ARG A 60 ? ? -125.87 -56.41 50 5 LYS A 96 ? ? 39.18 33.20 51 6 LYS A 4 ? ? 80.17 -62.71 52 6 ILE A 5 ? ? 28.36 58.39 53 6 THR A 20 ? ? -44.97 -14.51 54 6 LYS A 21 ? ? -66.89 24.02 55 6 ASP A 22 ? ? -71.13 43.43 56 6 ASP A 24 ? ? -172.86 -1.25 57 6 THR A 50 ? ? -64.48 68.56 58 6 ASN A 51 ? ? -176.12 -58.19 59 6 LEU A 53 ? ? -46.58 -14.88 60 6 ILE A 65 ? ? -135.85 -57.70 61 6 LYS A 96 ? ? 38.35 34.38 62 6 THR A 115 ? ? 36.01 79.31 63 6 TYR A 117 ? ? 71.55 36.34 64 7 THR A 20 ? ? -44.91 -14.80 65 7 LYS A 21 ? ? -69.03 23.87 66 7 ASP A 22 ? ? -71.81 43.86 67 7 ASP A 24 ? ? -171.63 0.46 68 7 LYS A 96 ? ? 39.17 33.31 69 8 LYS A 4 ? ? 33.37 70.24 70 8 ILE A 5 ? ? 45.67 73.60 71 8 THR A 20 ? ? -45.43 -14.88 72 8 LYS A 21 ? ? -70.26 21.71 73 8 ASP A 22 ? ? -70.37 39.54 74 8 ASP A 24 ? ? -173.86 -0.71 75 8 LEU A 55 ? ? -79.20 20.36 76 8 LYS A 63 ? ? -139.65 -70.19 77 8 ILE A 65 ? ? -143.32 48.05 78 8 LYS A 96 ? ? 34.73 43.48 79 8 ARG A 114 ? ? -80.67 -72.70 80 8 THR A 115 ? ? 30.80 75.33 81 9 THR A 20 ? ? -45.82 -14.62 82 9 LYS A 21 ? ? -70.05 24.12 83 9 ASP A 22 ? ? -68.76 39.32 84 9 ASP A 24 ? ? -168.63 -5.18 85 9 THR A 50 ? ? 49.88 -81.67 86 9 LEU A 52 ? ? -63.66 10.61 87 9 LEU A 53 ? ? -56.34 -9.15 88 9 SER A 62 ? ? 53.85 76.37 89 9 ARG A 64 ? ? 46.11 14.61 90 9 LYS A 96 ? ? 37.12 33.14 91 10 ILE A 5 ? ? 39.19 70.49 92 10 THR A 20 ? ? -44.61 -15.85 93 10 LYS A 21 ? ? -68.70 25.85 94 10 ASP A 22 ? ? -74.20 48.13 95 10 ASP A 24 ? ? -150.17 1.37 96 10 LEU A 55 ? ? -72.82 20.47 97 10 HIS A 56 ? ? 82.78 37.06 98 10 ARG A 64 ? ? 67.92 -36.49 99 10 ILE A 65 ? ? 67.95 -19.67 100 10 SER A 66 ? ? 56.26 7.26 101 10 LYS A 96 ? ? 33.44 41.82 102 10 THR A 115 ? ? -162.28 100.37 #