HEADER CHAPERONE 13-SEP-12 2LY8 TITLE THE BUDDING YEAST CHAPERONE SCM3 RECOGNIZES THE PARTIALLY UNFOLDED TITLE 2 DIMER OF THE CENTROMERE-SPECIFIC CSE4/H4 HISTONE VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BUDDING YEAST CHAPERONE SCM3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_TAXID: 4932; SOURCE 4 STRAIN: ATCC 204508 / S288C; SOURCE 5 GENE: CSE4P; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS-RIPL KEYWDS CENTROMERE PROTEIN, CENH3 VARIANTS, PARTIALLY UNFOLDED, CHAPERONE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR J.HONG,H.FENG,Z.ZHOU,R.GHIRLANDO,Y.BAI REVDAT 6 15-MAY-24 2LY8 1 REMARK REVDAT 5 14-JUN-23 2LY8 1 REMARK REVDAT 4 03-APR-13 2LY8 1 REMARK REVDAT 3 20-FEB-13 2LY8 1 JRNL REVDAT 2 30-JAN-13 2LY8 1 JRNL REVDAT 1 12-DEC-12 2LY8 0 JRNL AUTH J.HONG,H.FENG,Z.ZHOU,R.GHIRLANDO,Y.BAI JRNL TITL IDENTIFICATION OF FUNCTIONALLY CONSERVED REGIONS IN THE JRNL TITL 2 STRUCTURE OF THE CHAPERONE/CENH3/H4 COMPLEX. JRNL REF J.MOL.BIOL. V. 425 536 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23178171 JRNL DOI 10.1016/J.JMB.2012.11.021 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE UPDATED, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LY8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000102981. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308.1 REMARK 210 PH : 5.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 15N] SC4, 0.8 MM REMARK 210 [U-100% 13C; U-100% 15N] SC4, REMARK 210 0.8 MM [U-13C; U-15N; U-2H] SC4, REMARK 210 90% H2O/10% D2O; 0.8 MM [U-100% REMARK 210 13C; U-100% 15N] SC4, 100% D2O; REMARK 210 0.8 MM SC4, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-1H NOESY; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HBHA(CO)NH; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 700 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW UPDATED, X-PLOR NIH REMARK 210 UPDATED, NMRDRAW, PROCHECKNMR REMARK 210 UPDATED, MOLMOL REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 92 H ARG A 97 1.47 REMARK 500 O LYS A 21 H GLN A 23 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 20 -15.02 -44.57 REMARK 500 1 LYS A 21 23.98 -68.92 REMARK 500 1 ASP A 22 43.82 -71.61 REMARK 500 1 ASP A 24 -1.39 -172.08 REMARK 500 1 HIS A 56 -21.24 -142.01 REMARK 500 1 ARG A 64 68.60 -66.64 REMARK 500 1 SER A 66 72.64 -161.43 REMARK 500 1 LEU A 68 106.31 47.99 REMARK 500 1 LYS A 96 35.27 32.49 REMARK 500 1 THR A 115 -22.63 73.48 REMARK 500 1 LEU A 116 23.80 47.44 REMARK 500 1 TYR A 117 12.75 50.56 REMARK 500 2 THR A 20 -15.61 -44.11 REMARK 500 2 LYS A 21 25.35 -69.33 REMARK 500 2 ASP A 22 43.62 -72.79 REMARK 500 2 THR A 50 -145.35 -94.69 REMARK 500 2 ASN A 51 -4.46 62.11 REMARK 500 2 SER A 66 -23.34 77.33 REMARK 500 2 LYS A 96 37.82 35.58 REMARK 500 3 LYS A 4 117.50 57.43 REMARK 500 3 THR A 20 -14.64 -44.73 REMARK 500 3 LYS A 21 23.99 -66.83 REMARK 500 3 ASP A 22 39.31 -69.45 REMARK 500 3 ASP A 24 -0.13 -172.81 REMARK 500 3 ASN A 51 -26.43 -178.31 REMARK 500 3 HIS A 56 -30.31 -131.78 REMARK 500 3 ARG A 64 -4.33 56.90 REMARK 500 3 LYS A 96 37.05 37.40 REMARK 500 3 THR A 115 -27.97 83.77 REMARK 500 3 LEU A 116 114.46 54.97 REMARK 500 4 LYS A 4 -131.02 44.93 REMARK 500 4 THR A 20 -15.34 -44.99 REMARK 500 4 LYS A 21 23.73 -70.77 REMARK 500 4 ASP A 22 43.40 -71.47 REMARK 500 4 ASP A 24 -6.52 -172.81 REMARK 500 4 THR A 50 -165.80 -104.11 REMARK 500 4 ASN A 51 -28.73 64.54 REMARK 500 4 ARG A 60 57.53 -111.28 REMARK 500 4 LYS A 63 -77.54 -178.47 REMARK 500 4 LYS A 96 42.41 33.59 REMARK 500 4 TYR A 117 47.20 -93.58 REMARK 500 5 LYS A 4 -73.88 65.52 REMARK 500 5 THR A 20 -14.79 -44.81 REMARK 500 5 LYS A 21 24.36 -68.54 REMARK 500 5 ASP A 22 43.79 -71.22 REMARK 500 5 ASP A 24 -2.49 -170.98 REMARK 500 5 THR A 50 97.37 -51.99 REMARK 500 5 HIS A 56 13.42 -172.87 REMARK 500 5 ARG A 60 -56.41 -125.87 REMARK 500 5 LYS A 96 33.20 39.18 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18713 RELATED DB: BMRB DBREF 2LY8 A 1 121 PDB 2LY8 2LY8 1 121 SEQRES 1 A 121 LEU ILE SER LYS ILE PRO PHE ALA ARG LEU VAL LYS GLU SEQRES 2 A 121 VAL THR ASP GLU PHE THR THR LYS ASP GLN ASP LEU ARG SEQRES 3 A 121 TRP GLN SER MET ALA ILE MET ALA LEU GLN GLU ALA SER SEQRES 4 A 121 GLU ALA TYR LEU VAL GLY LEU LEU GLU HIS THR ASN LEU SEQRES 5 A 121 LEU ALA LEU HIS LEU VAL PRO ARG GLY SER LYS ARG ILE SEQRES 6 A 121 SER GLY LEU ILE TYR GLU GLU VAL ARG ALA VAL LEU LYS SEQRES 7 A 121 SER PHE LEU GLU SER VAL ILE ARG ASP SER VAL THR TYR SEQRES 8 A 121 THR GLU HIS ALA LYS ARG LYS THR VAL THR SER LEU ASP SEQRES 9 A 121 VAL VAL TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR SEQRES 10 A 121 GLY PHE GLY GLY HELIX 1 1 ILE A 5 THR A 19 1 15 HELIX 2 2 GLN A 28 ALA A 54 1 27 HELIX 3 3 LEU A 68 ALA A 95 1 28 HELIX 4 4 THR A 101 GLN A 112 1 12 HELIX 5 5 ARG A 114 PHE A 119 5 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1