data_2LY9 # _entry.id 2LY9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LY9 pdb_00002ly9 10.2210/pdb2ly9/pdb RCSB RCSB102982 ? ? BMRB 18714 ? ? WWPDB D_1000102982 ? ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified NESG-HR7907F TargetTrack . unspecified 18714 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LY9 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-09-14 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xu, X.' 1 'Eletsky, A.' 2 'Mills, J.L.' 3 'Pulavarti, S.V.S.R.K.' 4 'Lee, D.' 5 'Kohan, E.' 6 'Janjua, H.' 7 'Xiao, R.' 8 'Acton, T.B.' 9 'Everett, J.K.' 10 'Montelione, G.T.' 11 'Szyperski, T.' 12 'Northeast Structural Genomics Consortium (NESG)' 13 # _citation.id primary _citation.title ;Solution NMR Structure of Homeobox 2 Domain from Human ZHX1 repressor, Northeast Structural Genomics Consortium (NESG) Target HR7907F ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xu, X.' 1 ? primary 'Eletsky, A.' 2 ? primary 'Mills, J.L.' 3 ? primary 'Pulavarti, S.V.S.R.K.' 4 ? primary 'Lee, D.' 5 ? primary 'Kohan, E.' 6 ? primary 'Janjua, H.' 7 ? primary 'Xiao, R.' 8 ? primary 'Acton, T.B.' 9 ? primary 'Everett, J.K.' 10 ? primary 'Montelione, G.T.' 11 ? primary 'Szyperski, T.' 12 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Zinc fingers and homeoboxes protein 1' _entity.formula_weight 8710.016 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'DNA binding Homeobox 2 residues 462-532' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code SHMPDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNN _entity_poly.pdbx_seq_one_letter_code_can SHMPDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NESG-HR7907F # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 HIS n 1 3 MET n 1 4 PRO n 1 5 ASP n 1 6 SER n 1 7 PHE n 1 8 GLY n 1 9 ILE n 1 10 ARG n 1 11 ALA n 1 12 LYS n 1 13 LYS n 1 14 THR n 1 15 LYS n 1 16 GLU n 1 17 GLN n 1 18 LEU n 1 19 ALA n 1 20 GLU n 1 21 LEU n 1 22 LYS n 1 23 VAL n 1 24 SER n 1 25 TYR n 1 26 LEU n 1 27 LYS n 1 28 ASN n 1 29 GLN n 1 30 PHE n 1 31 PRO n 1 32 HIS n 1 33 ASP n 1 34 SER n 1 35 GLU n 1 36 ILE n 1 37 ILE n 1 38 ARG n 1 39 LEU n 1 40 MET n 1 41 LYS n 1 42 ILE n 1 43 THR n 1 44 GLY n 1 45 LEU n 1 46 THR n 1 47 LYS n 1 48 GLY n 1 49 GLU n 1 50 ILE n 1 51 LYS n 1 52 LYS n 1 53 TRP n 1 54 PHE n 1 55 SER n 1 56 ASP n 1 57 THR n 1 58 ARG n 1 59 TYR n 1 60 ASN n 1 61 GLN n 1 62 ARG n 1 63 ASN n 1 64 SER n 1 65 LYS n 1 66 SER n 1 67 ASN n 1 68 GLN n 1 69 CYS n 1 70 LEU n 1 71 HIS n 1 72 LEU n 1 73 ASN n 1 74 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ZHX1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)pMgK' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET15Avi6HT_NESG _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ZHX1_HUMAN _struct_ref.pdbx_db_accession Q9UKY1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code PDSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQCLHLNN _struct_ref.pdbx_align_begin 462 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LY9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 74 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UKY1 _struct_ref_seq.db_align_beg 462 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 532 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 74 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2LY9 SER A 1 ? UNP Q9UKY1 ? ? 'expression tag' 1 1 1 2LY9 HIS A 2 ? UNP Q9UKY1 ? ? 'expression tag' 2 2 1 2LY9 MET A 3 ? UNP Q9UKY1 ? ? 'expression tag' 3 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '3D HNCO' 1 4 1 '(4,3)D GFT CABCA(CO)NHN' 1 5 1 '(4,3)D GFT HNNCABCA' 1 6 2 '2D 1H-13C HSQC' 1 7 1 '(4,3)D GFT HCCH-COSY alipahtic' 1 8 1 '3D (H)CCH-TOCSY aliphatic' 1 9 1 '3D 13C/15N-edited NOESY' 1 10 1 '(4,3)D GFT HABCAB(CO)NH' 1 11 1 '3D (H)CCH-COSY aromatic' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.4 mM [U-100% 13C; U-100% 15N] HR7907F, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 1 x Proteinase Inhibitors, 20 mM MES, 50 uM DSS, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;0.3 mM [5% 13C; U-100% 15N] HR7907F, 0.02 % sodium azide, 10 mM DTT, 5 mM calcium chloride, 100 mM sodium chloride, 1 x Proteinase Inhibitors, 20 mM MES, 50 uM DSS, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 750 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2LY9 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;STRUCTURE DETERMINATION WAS PERFORMED BY RUNNING CYANA AND ASDP IN PARALLEL USING NOE-BASED CONSTRAINTS AND PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS FROM TALOS+. CONSENSUS PEAK ASSIGNMENTS WERE SELECTED AND USED IN ITERATIVE REFINEMENT WITH CYANA. THE 20 CONFORMERS OUT OF 100 WITH THE LOWEST TARGET FUNCTION WERE FURTHER REFINED BY SIMULATED ANNEALING IN EXPLICIT WATER BATH USING THE PROGRAM CNS WITH PARAM19 FORCE FIELD NMR ENSEMBLE INFORMATION ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LY9 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LY9 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Keller and Wuthrich' 'peak picking' CARA 1.8.4 1 'Keller and Wuthrich' 'chemical shift assignment' CARA 1.8.4 2 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 3.0 3 'Guntert, Mumenthaler and Wuthrich' 'geometry optimization' CYANA 3.0 4 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 3.0 5 'Huang, Tejero, Powers and Montelione' 'data analysis' AS-DP 1.0 6 'Huang, Tejero, Powers and Montelione' refinement AS-DP 1.0 7 'Zimmerman, Moseley, Kulikowski and Montelione' 'data analysis' AutoAssign 2.3.0 8 'Zimmerman, Moseley, Kulikowski and Montelione' 'chemical shift assignment' AutoAssign 2.3.0 9 'Bartels et al.' 'data analysis' XEASY ? 10 Varian collection VnmrJ ? 11 'Shen, Cornilescu, Delaglio and Bax' 'geometry optimization' TALOS+ ? 12 'Bhattacharya, Montelione' 'structure validation' PSVS ? 13 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LY9 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LY9 _struct.title ;Solution NMR Structure of Homeobox 2 Domain from Human ZHX1 repressor, Northeast Structural Genomics Consortium (NESG) Target HR7907F ; _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LY9 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'Structural Genomics, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), PSI-Biology, Protein Structure Initiative, TRANSCRIPTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 14 ? ASN A 28 ? THR A 14 ASN A 28 1 ? 15 HELX_P HELX_P2 2 HIS A 32 ? GLY A 44 ? HIS A 32 GLY A 44 1 ? 13 HELX_P HELX_P3 3 THR A 46 ? GLN A 61 ? THR A 46 GLN A 61 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2LY9 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 HIS 2 2 2 HIS HIS A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 ASP 5 5 5 ASP ASP A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ALA 19 19 19 ALA ALA A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 GLN 29 29 29 GLN GLN A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 PRO 31 31 31 PRO PRO A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 MET 40 40 40 MET MET A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 TRP 53 53 53 TRP TRP A . n A 1 54 PHE 54 54 54 PHE PHE A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 ASP 56 56 56 ASP ASP A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 ASN 67 67 67 ASN ASN A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 CYS 69 69 69 CYS CYS A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 HIS 71 71 71 HIS HIS A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ASN 74 74 74 ASN ASN A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name PSI:Biology # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-14 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_software 4 2 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_software.name' 5 2 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id HR7907F-1 0.4 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium azide-2' 0.02 ? % ? 1 DTT-3 10 ? mM ? 1 'calcium chloride-4' 5 ? mM ? 1 'sodium chloride-5' 100 ? mM ? 1 'Proteinase Inhibitors-6' 1 ? % ? 1 MES-7 20 ? mM ? 1 DSS-8 50 ? uM ? 1 HR7907F-9 0.3 ? mM '[5% 13C; U-100% 15N]' 2 'sodium azide-10' 0.02 ? % ? 2 DTT-11 10 ? mM ? 2 'calcium chloride-12' 5 ? mM ? 2 'sodium chloride-13' 100 ? mM ? 2 'Proteinase Inhibitors-14' 1 ? % ? 2 MES-15 20 ? mM ? 2 DSS-16 50 ? uM ? 2 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2LY9 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 875 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 278 _pdbx_nmr_constraints.NOE_long_range_total_count 176 _pdbx_nmr_constraints.NOE_medium_range_total_count 217 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 204 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_other_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 36 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 36 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 2 ? ? -130.79 -46.19 2 1 SER A 6 ? ? -150.74 12.13 3 1 ARG A 10 ? ? 59.34 19.29 4 1 SER A 66 ? ? 72.89 -60.53 5 1 ASN A 67 ? ? -84.31 -70.56 6 2 MET A 3 ? ? 64.68 103.40 7 2 ASP A 5 ? ? -67.34 87.23 8 2 ALA A 11 ? ? 58.16 -159.57 9 2 LYS A 13 ? ? -69.45 99.41 10 2 CYS A 69 ? ? 66.63 -175.73 11 2 LEU A 70 ? ? 75.39 -70.41 12 3 ASP A 5 ? ? 71.75 134.10 13 3 ALA A 11 ? ? 72.62 -73.22 14 3 THR A 43 ? ? -90.65 -61.62 15 3 SER A 66 ? ? 65.05 172.62 16 3 ASN A 73 ? ? -66.43 97.61 17 4 PRO A 4 ? ? -53.39 105.91 18 4 ILE A 9 ? ? -63.49 99.56 19 4 ARG A 10 ? ? 61.54 -72.72 20 4 ALA A 11 ? ? -67.97 92.38 21 4 ASN A 63 ? ? -107.08 45.66 22 5 MET A 3 ? ? 71.46 151.28 23 5 PRO A 4 ? ? -56.02 92.59 24 5 PHE A 7 ? ? -62.20 95.35 25 5 ASN A 67 ? ? 55.79 -154.28 26 5 LEU A 70 ? ? -154.80 -66.92 27 6 HIS A 2 ? ? -158.53 16.06 28 6 MET A 3 ? ? -153.23 86.63 29 6 SER A 6 ? ? -117.41 -79.89 30 6 HIS A 32 ? ? -62.68 -79.35 31 6 ASP A 33 ? ? -179.73 -52.15 32 6 CYS A 69 ? ? 67.38 86.85 33 7 ASP A 5 ? ? -84.89 32.19 34 7 PHE A 7 ? ? 62.41 90.06 35 7 ARG A 10 ? ? -156.09 -41.76 36 7 LYS A 13 ? ? 66.66 177.25 37 7 HIS A 32 ? ? -68.73 -70.95 38 7 ASP A 33 ? ? -159.32 -43.23 39 8 PHE A 7 ? ? -121.61 -53.18 40 8 ARG A 10 ? ? 64.17 89.75 41 8 ASN A 28 ? ? -164.85 100.44 42 8 HIS A 32 ? ? -79.99 -71.32 43 8 ASP A 33 ? ? -155.40 -54.95 44 8 GLN A 61 ? ? -91.93 -60.69 45 8 LYS A 65 ? ? -86.85 -82.47 46 8 SER A 66 ? ? -178.32 -67.06 47 8 ASN A 67 ? ? 59.05 103.44 48 8 LEU A 70 ? ? -83.20 43.33 49 9 ASP A 5 ? ? -148.49 -76.45 50 9 SER A 6 ? ? 68.52 -65.41 51 9 PHE A 7 ? ? 66.85 -78.97 52 9 LYS A 12 ? ? -160.77 -42.59 53 9 ASN A 28 ? ? -171.83 142.12 54 9 GLN A 68 ? ? -73.35 -157.87 55 9 CYS A 69 ? ? -69.74 82.02 56 10 PHE A 7 ? ? -65.74 87.78 57 10 ALA A 11 ? ? 59.79 -159.85 58 10 LYS A 13 ? ? 57.92 -171.77 59 10 SER A 64 ? ? -69.60 92.26 60 10 ASN A 67 ? ? 60.47 76.93 61 11 ARG A 10 ? ? -138.62 -55.19 62 11 ALA A 11 ? ? -150.96 41.33 63 11 ASN A 67 ? ? 57.13 79.46 64 12 PHE A 7 ? ? -100.02 -166.69 65 12 SER A 66 ? ? -164.61 100.65 66 12 ASN A 67 ? ? 64.89 136.06 67 12 GLN A 68 ? ? -159.26 -56.69 68 12 LEU A 72 ? ? 54.00 77.05 69 13 SER A 6 ? ? 68.34 156.13 70 13 ILE A 9 ? ? -66.67 98.70 71 13 ASN A 28 ? ? -160.34 103.43 72 13 HIS A 32 ? ? -89.67 -91.52 73 13 ASP A 33 ? ? -147.32 -57.22 74 13 SER A 64 ? ? -164.54 -47.13 75 13 LYS A 65 ? ? 64.03 -178.06 76 13 CYS A 69 ? ? -67.84 97.97 77 14 MET A 3 ? ? -57.07 105.01 78 14 LYS A 13 ? ? -57.02 105.62 79 14 HIS A 32 ? ? -87.02 -75.89 80 14 ASP A 33 ? ? -150.95 -58.37 81 14 LYS A 65 ? ? 68.68 110.05 82 15 MET A 3 ? ? 66.77 89.40 83 15 ALA A 11 ? ? 64.07 100.32 84 15 ILE A 42 ? ? -92.37 -64.61 85 15 ASN A 63 ? ? -68.59 86.87 86 15 ASN A 67 ? ? -69.32 96.20 87 15 LEU A 70 ? ? 60.72 90.56 88 15 HIS A 71 ? ? 69.08 113.43 89 16 ASP A 5 ? ? -74.08 -78.88 90 16 SER A 6 ? ? 53.46 71.88 91 16 ARG A 62 ? ? -147.99 27.89 92 16 ASN A 63 ? ? -58.96 106.62 93 16 ASN A 67 ? ? 63.19 -178.40 94 16 CYS A 69 ? ? 60.97 93.53 95 17 MET A 3 ? ? 67.30 162.39 96 17 PRO A 4 ? ? -74.04 39.70 97 17 SER A 6 ? ? -178.88 112.96 98 17 ARG A 10 ? ? -135.33 -70.09 99 17 ASN A 67 ? ? 68.32 171.65 100 17 HIS A 71 ? ? 69.56 119.92 101 18 PHE A 7 ? ? -63.44 96.40 102 18 ALA A 11 ? ? -152.43 27.82 103 18 LYS A 13 ? ? 67.58 114.79 104 18 CYS A 69 ? ? -90.61 -91.24 105 19 PRO A 4 ? ? -89.01 41.80 106 19 ASN A 28 ? ? -174.56 142.19 107 19 PHE A 30 ? ? -114.69 79.91 108 19 HIS A 32 ? ? -73.74 -77.34 109 19 ASP A 33 ? ? -158.25 -58.16 110 19 ARG A 62 ? ? -156.41 -16.88 111 19 SER A 64 ? ? -55.55 96.28 112 19 SER A 66 ? ? 71.14 64.67 113 19 CYS A 69 ? ? 62.14 72.92 114 19 HIS A 71 ? ? -49.59 101.99 115 20 HIS A 2 ? ? 64.67 99.46 116 20 MET A 3 ? ? 70.05 153.62 117 20 ARG A 62 ? ? -161.59 -55.09 118 20 ASN A 63 ? ? 61.50 -175.84 119 20 SER A 64 ? ? -142.93 -53.90 120 20 LYS A 65 ? ? -165.17 -40.32 121 20 GLN A 68 ? ? 54.87 84.53 122 20 ASN A 73 ? ? -58.21 90.93 #