HEADER PROTEIN BINDING 14-SEP-12 2LYC TITLE STRUCTURE OF C-TERMINAL DOMAIN OF SKA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPINDLE AND KINETOCHORE-ASSOCIATED PROTEIN 1 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: Y106G6H.15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3ATR KEYWDS SKA1, KINETOCHORE, MICROTUBULE, SKA1-MTBD, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.BOESZOERMENYI,J.C.SCHMIDT,M.MARKUS,M.OBERER,I.M.CHEESEMAN,G.WAGNER, AUTHOR 2 H.ARTHANARI REVDAT 4 14-JUN-23 2LYC 1 REMARK SEQADV REVDAT 3 28-NOV-12 2LYC 1 JRNL REVDAT 2 07-NOV-12 2LYC 1 JRNL REVDAT 1 24-OCT-12 2LYC 0 JRNL AUTH J.C.SCHMIDT,H.ARTHANARI,A.BOESZOERMENYI,N.M.DASHKEVICH, JRNL AUTH 2 E.M.WILSON-KUBALEK,N.MONNIER,M.MARKUS,M.OBERER,R.A.MILLIGAN, JRNL AUTH 3 M.BATHE,G.WAGNER,E.L.GRISHCHUK,I.M.CHEESEMAN JRNL TITL THE KINETOCHORE-BOUND SKA1 COMPLEX TRACKS DEPOLYMERIZING JRNL TITL 2 MICROTUBULES AND BINDS TO CURVED PROTOFILAMENTS. JRNL REF DEV.CELL V. 23 968 2012 JRNL REFN ISSN 1534-5807 JRNL PMID 23085020 JRNL DOI 10.1016/J.DEVCEL.2012.09.012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LYC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000102985. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.800 MM [U-100% 15N ILV-METHYL REMARK 210 13C] SKA1-MTBD, 20 MM POTASSIUM REMARK 210 PHOSPHATE, 150 MM NACL, 1.5 MM REMARK 210 DTT, 55 MM H2O, 0.0001 MM SODIUM REMARK 210 AZIDE, 100% D2O; 0.800 MM [U-100% REMARK 210 13C; U-100% 15N] SKA1-MTBD, 20 REMARK 210 MM POTASSIUM PHOSPHATE, 150 MM REMARK 210 NACL, 1.5 MM DTT, 55 MM H2O, REMARK 210 0.00001 MM SODIUM AZIDE, 95% H2O/ REMARK 210 5% D2O; 0.800 MM [U-100% 15N ILV- REMARK 210 METHYL 13C] SKA1-MTBD, 20 MM REMARK 210 POTASSIUM PHOSPHATE, 150 MM NACL, REMARK 210 1.5 MM DTT, 55 MM H2O, 0.00001 REMARK 210 MM SODIUM AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HCACO; 3D 1H-15N REMARK 210 NOESY; 3D TIME SHARED 13C-15N REMARK 210 NOESY; 4D HMQC-NOESY-HMQC; 2D- REMARK 210 HBCBCGCDHD; 2D-HBCBCGCDCEHE; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CCPNMR, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 8 -175.01 -69.75 REMARK 500 1 THR A 11 -168.56 -113.40 REMARK 500 1 LYS A 51 -174.65 -58.05 REMARK 500 1 LEU A 78 114.77 63.93 REMARK 500 1 LEU A 82 65.46 -117.93 REMARK 500 1 PRO A 91 5.01 -69.73 REMARK 500 1 LEU A 93 -113.69 -71.51 REMARK 500 1 ARG A 98 163.39 62.21 REMARK 500 1 PRO A 99 68.26 -69.76 REMARK 500 1 ARG A 112 45.46 70.38 REMARK 500 1 PRO A 121 35.57 -69.73 REMARK 500 1 PRO A 127 96.69 -69.80 REMARK 500 2 LYS A 51 171.17 -52.85 REMARK 500 2 PRO A 91 9.32 -69.75 REMARK 500 2 LEU A 93 -118.40 -73.80 REMARK 500 2 ARG A 98 164.11 64.35 REMARK 500 2 PRO A 99 69.40 -69.80 REMARK 500 2 ARG A 112 57.59 70.51 REMARK 500 2 PRO A 121 39.34 -69.77 REMARK 500 2 PRO A 127 93.64 -69.82 REMARK 500 3 LYS A 51 -175.35 -63.48 REMARK 500 3 PRO A 91 4.47 -69.81 REMARK 500 3 LEU A 93 -108.95 -63.56 REMARK 500 3 ARG A 98 164.54 65.24 REMARK 500 3 PRO A 99 73.14 -69.75 REMARK 500 3 ARG A 112 56.66 71.12 REMARK 500 3 PRO A 121 5.27 -69.76 REMARK 500 3 PRO A 127 93.48 -69.73 REMARK 500 4 LYS A 51 176.77 -55.82 REMARK 500 4 PRO A 91 4.19 -69.75 REMARK 500 4 LEU A 93 -106.39 -63.69 REMARK 500 4 ARG A 98 159.41 68.61 REMARK 500 4 PRO A 99 70.15 -69.74 REMARK 500 4 ARG A 112 58.34 72.70 REMARK 500 4 PRO A 121 40.95 -69.80 REMARK 500 4 PRO A 127 80.75 -69.80 REMARK 500 5 PRO A 91 12.20 -69.73 REMARK 500 5 LEU A 93 -113.58 -71.14 REMARK 500 5 ARG A 98 157.55 64.43 REMARK 500 5 PRO A 99 71.64 -69.80 REMARK 500 5 ARG A 112 58.22 72.92 REMARK 500 5 PRO A 121 1.78 -69.82 REMARK 500 5 PRO A 127 80.68 -69.79 REMARK 500 6 PRO A 8 -168.97 -69.75 REMARK 500 6 LYS A 51 -173.55 -63.24 REMARK 500 6 LYS A 76 124.57 -179.17 REMARK 500 6 PRO A 91 5.12 -69.72 REMARK 500 6 LEU A 93 -112.04 -61.50 REMARK 500 6 ARG A 98 164.89 64.03 REMARK 500 6 PRO A 99 71.84 -69.78 REMARK 500 REMARK 500 THIS ENTRY HAS 176 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18717 RELATED DB: BMRB DBREF 2LYC A 2 127 UNP Q9XWS0 SKA1_CAEEL 118 243 SEQADV 2LYC MET A 1 UNP Q9XWS0 INITIATING METHIONINE SEQADV 2LYC GLY A 128 UNP Q9XWS0 EXPRESSION TAG SEQADV 2LYC SER A 129 UNP Q9XWS0 EXPRESSION TAG SEQADV 2LYC SER A 130 UNP Q9XWS0 EXPRESSION TAG SEQRES 1 A 130 MET ASN ASP ILE ARG ILE VAL PRO GLN ILE THR ASP GLU SEQRES 2 A 130 GLU PHE LYS THR ILE PRO LYS TYR GLN LEU GLY ARG LEU SEQRES 3 A 130 THR LEU GLU MET MET ASN GLU ILE VAL SER LYS MET ASP SEQRES 4 A 130 ASP PHE LEU MET LYS LYS SER LYS ILE LEU GLY LYS THR SEQRES 5 A 130 ASN LYS GLN LEU THR ARG SER ASP ARG GLU VAL LEU ASP SEQRES 6 A 130 ASN TRP ARG GLU LEU GLU MET LYS ALA ARG LYS ARG LEU SEQRES 7 A 130 PRO THR THR LEU PHE PHE ILE GLU THR ASP ILE ARG PRO SEQRES 8 A 130 MET LEU GLN ASP ARG LEU ARG PRO SER PHE ALA LYS ALA SEQRES 9 A 130 ILE PRO CYS LEU ARG HIS ILE ARG ARG ILE ARG GLU GLU SEQRES 10 A 130 ARG CYS GLY PRO LEU THR PHE TYR TYR PRO GLY SER SER HELIX 1 1 THR A 11 LYS A 16 1 6 HELIX 2 2 PRO A 19 GLY A 24 1 6 HELIX 3 3 THR A 27 LEU A 49 1 23 HELIX 4 4 THR A 57 ALA A 74 1 18 HELIX 5 5 GLU A 86 ARG A 90 1 5 HELIX 6 6 PRO A 91 LEU A 93 5 3 HELIX 7 7 SER A 100 HIS A 110 1 11 SHEET 1 A 3 PHE A 84 ILE A 85 0 SHEET 2 A 3 THR A 123 TYR A 125 -1 O TYR A 125 N PHE A 84 SHEET 3 A 3 GLU A 117 ARG A 118 -1 N GLU A 117 O PHE A 124 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1