HEADER TRANSCRIPTION/PROTEIN BINDING 17-SEP-12 2LYD TITLE THE SOLUTION STRUCTURE OF THE DM DCP1 EVH1 DOMAIN IN COMPLEX WITH THE TITLE 2 XRN1 DBM PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DECAPPING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PACMAN PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: DCP1, CG11183, DMEL_CG11183; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 12 ORGANISM_COMMON: FRUIT FLY; SOURCE 13 ORGANISM_TAXID: 7227; SOURCE 14 GENE: PCM, PACMAN, CG3291; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS DCP1, XRN1, TRANSCRIPTION-PROTEIN BINDING COMPLEX EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR V.TRUFFAULT REVDAT 4 19-DEC-12 2LYD 1 JRNL REVDAT 3 28-NOV-12 2LYD 1 JRNL REVDAT 2 31-OCT-12 2LYD 1 JRNL REVDAT 1 17-OCT-12 2LYD 0 JRNL AUTH J.E.BRAUN,V.TRUFFAULT,A.BOLAND,E.HUNTZINGER,C.T.CHANG, JRNL AUTH 2 G.HAAS,O.WEICHENRIEDER,M.COLES,E.IZAURRALDE JRNL TITL A DIRECT INTERACTION BETWEEN DCP1 AND XRN1 COUPLES MRNA JRNL TITL 2 DECAPPING TO 5' EXONUCLEOLYTIC DEGRADATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 1324 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 23142987 JRNL DOI 10.1038/NSMB.2413 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR REMARK 3 AUTHORS : BRUNGER, A.T. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-12. REMARK 100 THE RCSB ID CODE IS RCSB102986. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 15N] PROTEIN_1, REMARK 210 0.7 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN_1, 0.4 MM [U-100% 15N] REMARK 210 PROTEIN_2, 0.7 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN_2, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D C(CO)NH; 3D REMARK 210 HNCACB; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D HNHA; 3D HCCH- REMARK 210 TOCSY; 3D HNHB; 2D NOESYNON; 2D REMARK 210 PLUSH-TACSY; 3D NNH NOESY; 3D CNH REMARK 210 NOESY; 3D CCH NOESY; 4D CCANH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 ASP A 18 77.20 -117.29 REMARK 500 2 PRO B1330 150.71 -49.50 REMARK 500 4 ASP A 18 77.32 -117.18 REMARK 500 5 ASP A 18 77.20 -117.18 REMARK 500 5 PRO B1342 157.00 -49.91 REMARK 500 6 ASP A 18 77.49 -117.20 REMARK 500 6 PRO B1322 30.63 -86.94 REMARK 500 6 PRO B1342 156.68 -49.82 REMARK 500 8 ASP A 18 79.18 -117.57 REMARK 500 9 ALA A 2 125.44 -174.56 REMARK 500 9 ASP A 18 77.40 -116.70 REMARK 500 9 PRO B1330 151.90 -49.26 REMARK 500 10 PRO A -5 30.54 -86.92 REMARK 500 10 ASP A 18 79.23 -116.25 REMARK 500 11 ASP A 18 79.16 -117.12 REMARK 500 11 PRO B1330 -179.30 -63.84 REMARK 500 12 ALA A 2 134.11 -178.61 REMARK 500 12 ASP A 18 77.43 -117.16 REMARK 500 12 PRO B1322 33.04 -87.29 REMARK 500 13 ASP A 18 77.30 -117.36 REMARK 500 13 PRO B1342 157.04 -49.19 REMARK 500 14 ASP A 18 77.15 -117.61 REMARK 500 14 GLN B1325 -44.91 -144.66 REMARK 500 16 ASP A 18 77.38 -117.05 REMARK 500 17 LEU B1323 -68.53 -141.26 REMARK 500 17 GLN B1326 -65.64 -93.59 REMARK 500 18 ASP A 18 77.85 -117.09 REMARK 500 18 GLU A 98 150.05 -49.57 REMARK 500 18 GLN B1326 -67.13 -98.99 REMARK 500 18 PRO B1342 156.98 -49.27 REMARK 500 19 ASP A 18 77.82 -116.27 REMARK 500 19 PRO B1322 108.98 -49.02 REMARK 500 20 ALA A 2 102.91 -178.09 REMARK 500 20 GLN B1326 -66.94 -150.01 REMARK 500 20 PRO B1342 156.86 -49.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18720 RELATED DB: BMRB DBREF 2LYD A 1 127 UNP Q9W1H5 Q9W1H5_DROME 1 127 DBREF 2LYD B 1322 1355 UNP Q9XZU2 Q9XZU2_DROME 1322 1355 SEQADV 2LYD GLY A -6 UNP Q9W1H5 EXPRESSION TAG SEQADV 2LYD PRO A -5 UNP Q9W1H5 EXPRESSION TAG SEQADV 2LYD HIS A -4 UNP Q9W1H5 EXPRESSION TAG SEQADV 2LYD MET A -3 UNP Q9W1H5 EXPRESSION TAG SEQADV 2LYD ALA A -2 UNP Q9W1H5 EXPRESSION TAG SEQADV 2LYD ASP A -1 UNP Q9W1H5 EXPRESSION TAG SEQADV 2LYD LEU A 0 UNP Q9W1H5 EXPRESSION TAG SEQADV 2LYD GLY B 1318 UNP Q9XZU2 EXPRESSION TAG SEQADV 2LYD PRO B 1319 UNP Q9XZU2 EXPRESSION TAG SEQADV 2LYD GLN B 1320 UNP Q9XZU2 EXPRESSION TAG SEQADV 2LYD ASP B 1321 UNP Q9XZU2 EXPRESSION TAG SEQRES 1 A 134 GLY PRO HIS MET ALA ASP LEU MET ALA ASP GLU SER ILE SEQRES 2 A 134 THR ARG MET ASN LEU ALA ALA ILE LYS LYS ILE ASP PRO SEQRES 3 A 134 TYR ALA LYS GLU ILE VAL ASP SER SER SER HIS VAL ALA SEQRES 4 A 134 PHE TYR THR PHE ASN SER SER GLN ASN GLU TRP GLU LYS SEQRES 5 A 134 THR ASP VAL GLU GLY ALA PHE PHE ILE TYR HIS ARG ASN SEQRES 6 A 134 ALA GLU PRO PHE HIS SER ILE PHE ILE ASN ASN ARG LEU SEQRES 7 A 134 ASN THR THR SER PHE VAL GLU PRO ILE THR GLY SER LEU SEQRES 8 A 134 GLU LEU GLN SER GLN PRO PRO PHE LEU LEU TYR ARG ASN SEQRES 9 A 134 GLU ARG SER ARG ILE ARG GLY PHE TRP PHE TYR ASN SER SEQRES 10 A 134 GLU GLU CYS ASP ARG ILE SER GLY LEU VAL ASN GLY LEU SEQRES 11 A 134 LEU LYS SER LYS SEQRES 1 B 38 GLY PRO GLN ASP PRO LEU LEU GLN GLN GLN ARG ALA PRO SEQRES 2 B 38 PHE PRO GLY GLN MET PRO ASN LEU PRO LYS PRO PRO LEU SEQRES 3 B 38 PHE TRP GLN GLN GLU ALA GLN LYS GLN GLU ALA LEU HELIX 1 1 ASP A 3 ASP A 18 1 16 HELIX 2 2 GLU A 98 SER A 100 5 3 HELIX 3 3 ASN A 109 SER A 126 1 18 HELIX 4 4 PRO B 1342 ALA B 1354 1 13 SHEET 1 A 7 THR A 74 PRO A 79 0 SHEET 2 A 7 HIS A 63 ASN A 69 -1 N ILE A 67 O PHE A 76 SHEET 3 A 7 GLU A 42 HIS A 56 -1 N TYR A 55 O SER A 64 SHEET 4 A 7 GLU A 23 ASN A 37 -1 N THR A 35 O GLU A 44 SHEET 5 A 7 ARG A 101 PHE A 107 -1 O ILE A 102 N PHE A 36 SHEET 6 A 7 PHE A 92 ASN A 97 -1 N ASN A 97 O ARG A 101 SHEET 7 A 7 GLU A 85 GLN A 89 -1 N GLN A 87 O LEU A 94 CISPEP 1 GLU A 60 PRO A 61 1 -1.88 CISPEP 2 PRO A 90 PRO A 91 1 -3.24 CISPEP 3 GLU A 60 PRO A 61 2 -1.51 CISPEP 4 PRO A 90 PRO A 91 2 -3.88 CISPEP 5 GLU A 60 PRO A 61 3 -1.44 CISPEP 6 PRO A 90 PRO A 91 3 -6.76 CISPEP 7 GLU A 60 PRO A 61 4 -3.15 CISPEP 8 PRO A 90 PRO A 91 4 -3.43 CISPEP 9 GLU A 60 PRO A 61 5 -1.47 CISPEP 10 PRO A 90 PRO A 91 5 -3.48 CISPEP 11 GLU A 60 PRO A 61 6 -0.92 CISPEP 12 PRO A 90 PRO A 91 6 -5.21 CISPEP 13 GLU A 60 PRO A 61 7 -0.91 CISPEP 14 PRO A 90 PRO A 91 7 -4.13 CISPEP 15 GLU A 60 PRO A 61 8 -1.08 CISPEP 16 PRO A 90 PRO A 91 8 -3.86 CISPEP 17 GLU A 60 PRO A 61 9 -3.75 CISPEP 18 PRO A 90 PRO A 91 9 -3.85 CISPEP 19 GLU A 60 PRO A 61 10 -1.00 CISPEP 20 PRO A 90 PRO A 91 10 -5.48 CISPEP 21 GLU A 60 PRO A 61 11 -1.71 CISPEP 22 PRO A 90 PRO A 91 11 -4.01 CISPEP 23 GLU A 60 PRO A 61 12 -0.79 CISPEP 24 PRO A 90 PRO A 91 12 -3.75 CISPEP 25 GLU A 60 PRO A 61 13 -1.31 CISPEP 26 PRO A 90 PRO A 91 13 -4.25 CISPEP 27 GLU A 60 PRO A 61 14 -1.17 CISPEP 28 PRO A 90 PRO A 91 14 -4.88 CISPEP 29 GLU A 60 PRO A 61 15 -1.20 CISPEP 30 PRO A 90 PRO A 91 15 -3.45 CISPEP 31 GLU A 60 PRO A 61 16 -1.59 CISPEP 32 PRO A 90 PRO A 91 16 -3.75 CISPEP 33 GLU A 60 PRO A 61 17 -0.96 CISPEP 34 PRO A 90 PRO A 91 17 -3.96 CISPEP 35 GLU A 60 PRO A 61 18 -1.05 CISPEP 36 PRO A 90 PRO A 91 18 -4.44 CISPEP 37 GLU A 60 PRO A 61 19 -1.30 CISPEP 38 PRO A 90 PRO A 91 19 -4.28 CISPEP 39 GLU A 60 PRO A 61 20 -3.02 CISPEP 40 PRO A 90 PRO A 91 20 -4.32 CISPEP 41 GLU A 60 PRO A 61 21 -1.68 CISPEP 42 PRO A 90 PRO A 91 21 -3.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1