data_2LZU # _entry.id 2LZU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2LZU pdb_00002lzu 10.2210/pdb2lzu/pdb RCSB RCSB103030 ? ? BMRB 18778 ? ? WWPDB D_1000103030 ? ? # _pdbx_database_related.db_id 18778 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2LZU _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-10-10 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Talebzadeh Farooji, M.' 1 'Peng, H.' 2 'Rauscher, F.J.' 3 'Borden, K.K.L.' 4 'Osborne, M.J.' 5 # _citation.id primary _citation.title 'Solution Structure of LIMD2' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Talebzadeh Farooji, M.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'LIM domain-containing protein 2' 8318.658 1 ? ? 'LIM zinc-binding domain residues 33-104' ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code RAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDE _entity_poly.pdbx_seq_one_letter_code_can RAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 ALA n 1 3 GLN n 1 4 VAL n 1 5 LYS n 1 6 GLU n 1 7 THR n 1 8 CYS n 1 9 ALA n 1 10 ALA n 1 11 CYS n 1 12 GLN n 1 13 LYS n 1 14 THR n 1 15 VAL n 1 16 TYR n 1 17 PRO n 1 18 MET n 1 19 GLU n 1 20 ARG n 1 21 LEU n 1 22 VAL n 1 23 ALA n 1 24 ASP n 1 25 LYS n 1 26 LEU n 1 27 ILE n 1 28 PHE n 1 29 HIS n 1 30 ASN n 1 31 SER n 1 32 CYS n 1 33 PHE n 1 34 CYS n 1 35 CYS n 1 36 LYS n 1 37 HIS n 1 38 CYS n 1 39 HIS n 1 40 THR n 1 41 LYS n 1 42 LEU n 1 43 SER n 1 44 LEU n 1 45 GLY n 1 46 SER n 1 47 TYR n 1 48 ALA n 1 49 ALA n 1 50 LEU n 1 51 HIS n 1 52 GLY n 1 53 GLU n 1 54 PHE n 1 55 TYR n 1 56 CYS n 1 57 LYS n 1 58 PRO n 1 59 HIS n 1 60 PHE n 1 61 GLN n 1 62 GLN n 1 63 LEU n 1 64 PHE n 1 65 LYS n 1 66 SER n 1 67 LYS n 1 68 GLY n 1 69 ASN n 1 70 TYR n 1 71 ASP n 1 72 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'LIMD2, SB143' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pET47b+ _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LIMD2_HUMAN _struct_ref.pdbx_db_accession Q9BT23 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code RAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDE _struct_ref.pdbx_align_begin 33 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2LZU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 72 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9BT23 _struct_ref_seq.db_align_beg 33 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 104 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 36 _struct_ref_seq.pdbx_auth_seq_align_end 107 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D HNCACB' 1 2 2 '2D 1H-15N HSQC' 1 3 1 '2D 1H-13C HSQC' 1 4 3 '2D DQF-COSY' 1 5 3 '2D 1H-1H TOCSY' 1 6 3 '2D 1H-1H NOESY' 1 7 4 '3D HCCH-TOCSY' 1 8 2 '3D 1H-15N NOESY' 1 9 4 '3D 1H-13C NOESY' 1 10 1 '3D H(CCO)NH' 1 11 1 '3D CBCA(CO)NH' 1 12 1 '3D HBHA(CO)NH' 1 13 2 '3D HNHB' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 25 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '300-500 uM [U-99% 13C; U-99% 15N] LIMD2, 50 mM sodium phosphate, 100 mM sodium chloride, 1 mM TCEP, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '300-500 uM [U-99% 15N] LIMD2, 50 mM sodium phosphate, 100 mM sodium chloride, 1 mM TCEP, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '300-500 uM LIMD2, 50 mM sodium phosphate, 100 mM sodium chloride, 1 mM TCEP, 100% D2O' 3 '100% D2O' '300-500 uM [U-99% 13C; U-99% 15N] LIMD2, 50 mM sodium phosphate, 100 mM sodium chloride, 1 mM TCEP, 100% D2O' 4 '100% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2LZU _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 450 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2LZU _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2LZU _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Varian collection VnmrJ ? 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 2 Goddard 'chemical shift assignment' Sparky ? 3 ;Linge, O'Donoghue and Nilges ; 'structure solution' ARIA 2.3 4 ;Linge, O'Donoghue and Nilges ; 'automated chemical shift asignment' ARIA 2.3 5 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS ? 6 'Koradi, Billeter and Wuthrich' visualization MOLMOL ? 7 'Warren Delano' visualization PyMOL ? 8 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2LZU _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2LZU _struct.title 'Solution structure of LIMD2' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2LZU _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text 'METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id CYS _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 56 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 63 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id CYS _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 91 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 98 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 8 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 43 A ZN 201 1_555 ? ? ? ? ? ? ? 2.268 ? ? metalc2 metalc ? ? A CYS 11 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 46 A ZN 201 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc3 metalc ? ? A HIS 29 ND1 ? ? ? 1_555 B ZN . ZN ? ? A HIS 64 A ZN 201 1_555 ? ? ? ? ? ? ? 2.005 ? ? metalc4 metalc ? ? A CYS 32 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 67 A ZN 201 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc5 metalc ? ? A CYS 35 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 70 A ZN 202 1_555 ? ? ? ? ? ? ? 2.297 ? ? metalc6 metalc ? ? A CYS 38 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 73 A ZN 202 1_555 ? ? ? ? ? ? ? 2.288 ? ? metalc7 metalc ? ? A CYS 56 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 91 A ZN 202 1_555 ? ? ? ? ? ? ? 2.320 ? ? metalc8 metalc ? ? A HIS 59 ND1 ? ? ? 1_555 C ZN . ZN ? ? A HIS 94 A ZN 202 1_555 ? ? ? ? ? ? ? 1.994 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 6 ? THR A 7 ? GLU A 41 THR A 42 A 2 THR A 14 ? VAL A 15 ? THR A 49 VAL A 50 B 1 ARG A 20 ? ALA A 23 ? ARG A 55 ALA A 58 B 2 LEU A 26 ? HIS A 29 ? LEU A 61 HIS A 64 C 1 ALA A 48 ? ALA A 49 ? ALA A 83 ALA A 84 C 2 PHE A 54 ? TYR A 55 ? PHE A 89 TYR A 90 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 6 ? N GLU A 41 O VAL A 15 ? O VAL A 50 B 1 2 N LEU A 21 ? N LEU A 56 O PHE A 28 ? O PHE A 63 C 1 2 N ALA A 48 ? N ALA A 83 O TYR A 55 ? O TYR A 90 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 201 ? 4 'BINDING SITE FOR RESIDUE ZN A 201' AC2 Software A ZN 202 ? 4 'BINDING SITE FOR RESIDUE ZN A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 8 ? CYS A 43 . ? 1_555 ? 2 AC1 4 CYS A 11 ? CYS A 46 . ? 1_555 ? 3 AC1 4 HIS A 29 ? HIS A 64 . ? 1_555 ? 4 AC1 4 CYS A 32 ? CYS A 67 . ? 1_555 ? 5 AC2 4 CYS A 35 ? CYS A 70 . ? 1_555 ? 6 AC2 4 CYS A 38 ? CYS A 73 . ? 1_555 ? 7 AC2 4 CYS A 56 ? CYS A 91 . ? 1_555 ? 8 AC2 4 HIS A 59 ? HIS A 94 . ? 1_555 ? # _atom_sites.entry_id 2LZU _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 36 36 ARG ARG A . n A 1 2 ALA 2 37 37 ALA ALA A . n A 1 3 GLN 3 38 38 GLN GLN A . n A 1 4 VAL 4 39 39 VAL VAL A . n A 1 5 LYS 5 40 40 LYS LYS A . n A 1 6 GLU 6 41 41 GLU GLU A . n A 1 7 THR 7 42 42 THR THR A . n A 1 8 CYS 8 43 43 CYS CYS A . n A 1 9 ALA 9 44 44 ALA ALA A . n A 1 10 ALA 10 45 45 ALA ALA A . n A 1 11 CYS 11 46 46 CYS CYS A . n A 1 12 GLN 12 47 47 GLN GLN A . n A 1 13 LYS 13 48 48 LYS LYS A . n A 1 14 THR 14 49 49 THR THR A . n A 1 15 VAL 15 50 50 VAL VAL A . n A 1 16 TYR 16 51 51 TYR TYR A . n A 1 17 PRO 17 52 52 PRO PRO A . n A 1 18 MET 18 53 53 MET MET A . n A 1 19 GLU 19 54 54 GLU GLU A . n A 1 20 ARG 20 55 55 ARG ARG A . n A 1 21 LEU 21 56 56 LEU LEU A . n A 1 22 VAL 22 57 57 VAL VAL A . n A 1 23 ALA 23 58 58 ALA ALA A . n A 1 24 ASP 24 59 59 ASP ASP A . n A 1 25 LYS 25 60 60 LYS LYS A . n A 1 26 LEU 26 61 61 LEU LEU A . n A 1 27 ILE 27 62 62 ILE ILE A . n A 1 28 PHE 28 63 63 PHE PHE A . n A 1 29 HIS 29 64 64 HIS HIS A . n A 1 30 ASN 30 65 65 ASN ASN A . n A 1 31 SER 31 66 66 SER SER A . n A 1 32 CYS 32 67 67 CYS CYS A . n A 1 33 PHE 33 68 68 PHE PHE A . n A 1 34 CYS 34 69 69 CYS CYS A . n A 1 35 CYS 35 70 70 CYS CYS A . n A 1 36 LYS 36 71 71 LYS LYS A . n A 1 37 HIS 37 72 72 HIS HIS A . n A 1 38 CYS 38 73 73 CYS CYS A . n A 1 39 HIS 39 74 74 HIS HIS A . n A 1 40 THR 40 75 75 THR THR A . n A 1 41 LYS 41 76 76 LYS LYS A . n A 1 42 LEU 42 77 77 LEU LEU A . n A 1 43 SER 43 78 78 SER SER A . n A 1 44 LEU 44 79 79 LEU LEU A . n A 1 45 GLY 45 80 80 GLY GLY A . n A 1 46 SER 46 81 81 SER SER A . n A 1 47 TYR 47 82 82 TYR TYR A . n A 1 48 ALA 48 83 83 ALA ALA A . n A 1 49 ALA 49 84 84 ALA ALA A . n A 1 50 LEU 50 85 85 LEU LEU A . n A 1 51 HIS 51 86 86 HIS HIS A . n A 1 52 GLY 52 87 87 GLY GLY A . n A 1 53 GLU 53 88 88 GLU GLU A . n A 1 54 PHE 54 89 89 PHE PHE A . n A 1 55 TYR 55 90 90 TYR TYR A . n A 1 56 CYS 56 91 91 CYS CYS A . n A 1 57 LYS 57 92 92 LYS LYS A . n A 1 58 PRO 58 93 93 PRO PRO A . n A 1 59 HIS 59 94 94 HIS HIS A . n A 1 60 PHE 60 95 95 PHE PHE A . n A 1 61 GLN 61 96 96 GLN GLN A . n A 1 62 GLN 62 97 97 GLN GLN A . n A 1 63 LEU 63 98 98 LEU LEU A . n A 1 64 PHE 64 99 99 PHE PHE A . n A 1 65 LYS 65 100 100 LYS LYS A . n A 1 66 SER 66 101 101 SER SER A . n A 1 67 LYS 67 102 102 LYS LYS A . n A 1 68 GLY 68 103 103 GLY GLY A . n A 1 69 ASN 69 104 104 ASN ASN A . n A 1 70 TYR 70 105 105 TYR TYR A . n A 1 71 ASP 71 106 106 ASP ASP A . n A 1 72 GLU 72 107 107 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 201 1 ZN ZN A . C 2 ZN 1 202 2 ZN ZN A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 8 ? A CYS 43 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 SG ? A CYS 11 ? A CYS 46 ? 1_555 106.7 ? 2 SG ? A CYS 8 ? A CYS 43 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 ND1 ? A HIS 29 ? A HIS 64 ? 1_555 107.4 ? 3 SG ? A CYS 11 ? A CYS 46 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 ND1 ? A HIS 29 ? A HIS 64 ? 1_555 111.9 ? 4 SG ? A CYS 8 ? A CYS 43 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 SG ? A CYS 32 ? A CYS 67 ? 1_555 106.3 ? 5 SG ? A CYS 11 ? A CYS 46 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 SG ? A CYS 32 ? A CYS 67 ? 1_555 113.3 ? 6 ND1 ? A HIS 29 ? A HIS 64 ? 1_555 ZN ? B ZN . ? A ZN 201 ? 1_555 SG ? A CYS 32 ? A CYS 67 ? 1_555 110.8 ? 7 SG ? A CYS 35 ? A CYS 70 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 SG ? A CYS 38 ? A CYS 73 ? 1_555 104.1 ? 8 SG ? A CYS 35 ? A CYS 70 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 SG ? A CYS 56 ? A CYS 91 ? 1_555 106.1 ? 9 SG ? A CYS 38 ? A CYS 73 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 SG ? A CYS 56 ? A CYS 91 ? 1_555 115.0 ? 10 SG ? A CYS 35 ? A CYS 70 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 ND1 ? A HIS 59 ? A HIS 94 ? 1_555 109.0 ? 11 SG ? A CYS 38 ? A CYS 73 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 ND1 ? A HIS 59 ? A HIS 94 ? 1_555 113.1 ? 12 SG ? A CYS 56 ? A CYS 91 ? 1_555 ZN ? C ZN . ? A ZN 202 ? 1_555 ND1 ? A HIS 59 ? A HIS 94 ? 1_555 109.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-04-16 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_software 4 2 'Structure model' pdbx_struct_conn_angle 5 2 'Structure model' struct_conn 6 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_software.name' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.value' 18 2 'Structure model' '_struct_conn.pdbx_dist_value' 19 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 20 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 21 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 27 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 28 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id LIMD2-1 ? 300-500 uM '[U-99% 13C; U-99% 15N]' 1 'sodium phosphate-2' 50 ? mM ? 1 'sodium chloride-3' 100 ? mM ? 1 TCEP-4 1 ? mM ? 1 LIMD2-5 ? 300-500 uM '[U-99% 15N]' 2 'sodium phosphate-6' 50 ? mM ? 2 'sodium chloride-7' 100 ? mM ? 2 TCEP-8 1 ? mM ? 2 LIMD2-9 ? 300-500 uM ? 3 'sodium phosphate-10' 50 ? mM ? 3 'sodium chloride-11' 100 ? mM ? 3 TCEP-12 1 ? mM ? 3 LIMD2-13 ? 300-500 uM '[U-99% 13C; U-99% 15N]' 4 'sodium phosphate-14' 50 ? mM ? 4 'sodium chloride-15' 100 ? mM ? 4 TCEP-16 1 ? mM ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 6 _pdbx_validate_close_contact.auth_atom_id_1 HZ2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 92 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OD1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 106 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.59 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 38 ? ? -136.85 -60.21 2 1 CYS A 46 ? ? -150.35 4.11 3 1 LEU A 79 ? ? 32.24 100.16 4 1 SER A 101 ? ? -96.84 -75.20 5 1 LYS A 102 ? ? -122.12 -86.38 6 1 ASN A 104 ? ? 77.74 81.49 7 2 ALA A 37 ? ? 62.17 109.29 8 2 ASP A 59 ? ? 50.79 -71.67 9 2 LYS A 60 ? ? -164.54 16.59 10 2 LEU A 79 ? ? 28.62 87.63 11 2 SER A 101 ? ? -111.89 -160.99 12 2 ASN A 104 ? ? 175.71 -39.58 13 3 ASP A 59 ? ? 49.75 -76.17 14 3 LYS A 60 ? ? -163.10 27.57 15 3 LEU A 79 ? ? 24.21 73.62 16 4 LEU A 79 ? ? 36.79 47.07 17 4 SER A 101 ? ? -103.73 -85.22 18 4 LYS A 102 ? ? -96.25 -99.85 19 5 LYS A 60 ? ? 73.38 -4.09 20 5 LEU A 79 ? ? 30.02 77.90 21 5 LYS A 102 ? ? 37.43 -102.58 22 5 ASN A 104 ? ? 154.26 -66.73 23 6 ASP A 59 ? ? 47.88 -72.14 24 6 LYS A 60 ? ? -166.69 26.87 25 6 LEU A 79 ? ? 35.39 51.87 26 6 LYS A 100 ? ? 80.29 155.37 27 6 SER A 101 ? ? 74.91 169.84 28 6 ASN A 104 ? ? -150.20 87.88 29 6 ASP A 106 ? ? -67.42 91.60 30 7 ALA A 37 ? ? 67.62 137.96 31 7 LYS A 40 ? ? -113.84 58.06 32 7 LYS A 60 ? ? 71.00 -2.66 33 7 LYS A 100 ? ? 68.72 -158.16 34 7 SER A 101 ? ? 62.63 -158.00 35 7 ASN A 104 ? ? -69.69 94.48 36 7 TYR A 105 ? ? -92.62 -62.93 37 8 ARG A 55 ? ? -64.73 97.72 38 8 LEU A 79 ? ? 39.38 86.35 39 8 TYR A 105 ? ? -176.78 41.95 40 9 ALA A 37 ? ? -148.62 36.21 41 9 LEU A 79 ? ? 38.20 65.40 42 9 LYS A 100 ? ? 75.32 -37.71 43 9 LYS A 102 ? ? 149.95 -123.27 44 9 ASP A 106 ? ? -161.91 94.69 45 10 LEU A 79 ? ? 40.94 92.73 46 10 LYS A 100 ? ? -172.22 -89.74 47 10 SER A 101 ? ? 162.97 171.35 48 10 LYS A 102 ? ? 176.53 -55.47 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN #