data_2LZV
# 
_entry.id   2LZV 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.392 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   2LZV         pdb_00002lzv 10.2210/pdb2lzv/pdb 
RCSB  RCSB103031   ?            ?                   
BMRB  18780        ?            10.13018/BMR18780   
WWPDB D_1000103031 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2013-10-16 
2 'Structure model' 1 1 2017-10-04 
3 'Structure model' 1 2 2022-08-24 
4 'Structure model' 1 3 2023-06-14 
5 'Structure model' 1 4 2024-05-15 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Database references'  
2 2 'Structure model' 'Source and taxonomy'  
3 3 'Structure model' 'Data collection'      
4 3 'Structure model' 'Database references'  
5 3 'Structure model' 'Derived calculations' 
6 4 'Structure model' Other                  
7 5 'Structure model' 'Data collection'      
8 5 'Structure model' 'Database references'  
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1  2 'Structure model' citation             
2  2 'Structure model' pdbx_entity_src_syn  
3  3 'Structure model' citation             
4  3 'Structure model' database_2           
5  3 'Structure model' pdbx_nmr_software    
6  3 'Structure model' struct_conn          
7  3 'Structure model' struct_site          
8  4 'Structure model' pdbx_database_status 
9  5 'Structure model' chem_comp_atom       
10 5 'Structure model' chem_comp_bond       
11 5 'Structure model' database_2           
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  2 'Structure model' '_citation.country'                          
2  2 'Structure model' '_citation.journal_abbrev'                   
3  2 'Structure model' '_citation.journal_id_CSD'                   
4  2 'Structure model' '_citation.journal_id_ISSN'                  
5  2 'Structure model' '_citation.pdbx_database_id_DOI'             
6  2 'Structure model' '_citation.pdbx_database_id_PubMed'          
7  2 'Structure model' '_citation.title'                            
8  2 'Structure model' '_citation.year'                             
9  3 'Structure model' '_citation.journal_abbrev'                   
10 3 'Structure model' '_citation.journal_volume'                   
11 3 'Structure model' '_citation.page_first'                       
12 3 'Structure model' '_citation.page_last'                        
13 3 'Structure model' '_citation.title'                            
14 3 'Structure model' '_database_2.pdbx_DOI'                       
15 3 'Structure model' '_database_2.pdbx_database_accession'        
16 3 'Structure model' '_pdbx_nmr_software.name'                    
17 3 'Structure model' '_struct_conn.pdbx_dist_value'               
18 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'        
19 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id'            
20 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'           
21 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'           
22 3 'Structure model' '_struct_site.pdbx_auth_asym_id'             
23 3 'Structure model' '_struct_site.pdbx_auth_comp_id'             
24 3 'Structure model' '_struct_site.pdbx_auth_seq_id'              
25 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 
26 5 'Structure model' '_database_2.pdbx_DOI'                       
# 
_pdbx_database_status.deposit_site                    BMRB 
_pdbx_database_status.entry_id                        2LZV 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.recvd_initial_deposition_date   2012-10-11 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.status_code_mr                  REL 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  REL 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            REL 
# 
loop_
_pdbx_database_related.content_type 
_pdbx_database_related.db_id 
_pdbx_database_related.db_name 
_pdbx_database_related.details 
unspecified 1N4B  PDB  . 
unspecified 1S37  PDB  . 
unspecified 1XCI  PDB  . 
unspecified 2LZW  PDB  . 
unspecified 18780 BMRB . 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Denisov, A.Y.' 1 
'McManus, F.P.' 2 
'Noronha, A.M.' 3 
'Wilds, C.J.'   4 
# 
_citation.id                        primary 
_citation.title                     'Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase.' 
_citation.journal_abbrev            Org.Biomol.Chem. 
_citation.journal_volume            15 
_citation.page_first                8361 
_citation.page_last                 8370 
_citation.year                      2017 
_citation.journal_id_ASTM           ? 
_citation.country                   UK 
_citation.journal_id_ISSN           1477-0539 
_citation.journal_id_CSD            ? 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   28937154 
_citation.pdbx_database_id_DOI      10.1039/c7ob02093g 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Denisov, A.Y.'    1 ? 
primary 'McManus, F.P.'    2 ? 
primary 
;O'Flaherty, D.K.
;
3 ? 
primary 'Noronha, A.M.'    4 ? 
primary 'Wilds, C.J.'      5 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn 
;DNA (5'-D(*CP*GP*AP*AP*AP*UP*TP*TP*TP*CP*G)-3')
;
3334.183 2 ? ? ? ? 
2 non-polymer syn HEPTANE                                           100.202  1 ? ? ? ? 
# 
_entity_poly.entity_id                      1 
_entity_poly.type                           polydeoxyribonucleotide 
_entity_poly.nstd_linkage                   no 
_entity_poly.nstd_monomer                   no 
_entity_poly.pdbx_seq_one_letter_code       '(DC)(DG)(DA)(DA)(DA)(DU)(DT)(DT)(DT)(DC)(DG)' 
_entity_poly.pdbx_seq_one_letter_code_can   CGAAAUTTTCG 
_entity_poly.pdbx_strand_id                 A,B 
_entity_poly.pdbx_target_identifier         ? 
# 
_pdbx_entity_nonpoly.entity_id   2 
_pdbx_entity_nonpoly.name        HEPTANE 
_pdbx_entity_nonpoly.comp_id     HP6 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  DC n 
1 2  DG n 
1 3  DA n 
1 4  DA n 
1 5  DA n 
1 6  DU n 
1 7  DT n 
1 8  DT n 
1 9  DT n 
1 10 DC n 
1 11 DG n 
# 
_pdbx_entity_src_syn.entity_id              1 
_pdbx_entity_src_syn.pdbx_src_id            1 
_pdbx_entity_src_syn.pdbx_alt_source_flag   sample 
_pdbx_entity_src_syn.pdbx_beg_seq_num       ? 
_pdbx_entity_src_syn.pdbx_end_seq_num       ? 
_pdbx_entity_src_syn.organism_scientific    'synthetic construct' 
_pdbx_entity_src_syn.organism_common_name   ? 
_pdbx_entity_src_syn.ncbi_taxonomy_id       32630 
_pdbx_entity_src_syn.details                ? 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
DA  'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 
DC  'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O7 P'  307.197 
DG  'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
DT  'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE"         ? 'C10 H15 N2 O8 P' 322.208 
DU  'DNA linking' y "2'-DEOXYURIDINE-5'-MONOPHOSPHATE"   ? 'C9 H13 N2 O8 P'  308.182 
HP6 non-polymer   . HEPTANE                              ? 'C7 H16'          100.202 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  DC 1  1  1  DC DC A . n 
A 1 2  DG 2  2  2  DG DG A . n 
A 1 3  DA 3  3  3  DA DA A . n 
A 1 4  DA 4  4  4  DA DA A . n 
A 1 5  DA 5  5  5  DA DA A . n 
A 1 6  DU 6  6  6  DU DU A . n 
A 1 7  DT 7  7  7  DT DT A . n 
A 1 8  DT 8  8  8  DT DT A . n 
A 1 9  DT 9  9  9  DT DT A . n 
A 1 10 DC 10 10 10 DC DC A . n 
A 1 11 DG 11 11 11 DG DG A . n 
B 1 1  DC 1  1  1  DC DC B . n 
B 1 2  DG 2  2  2  DG DG B . n 
B 1 3  DA 3  3  3  DA DA B . n 
B 1 4  DA 4  4  4  DA DA B . n 
B 1 5  DA 5  5  5  DA DA B . n 
B 1 6  DU 6  6  6  DU DU B . n 
B 1 7  DT 7  7  7  DT DT B . n 
B 1 8  DT 8  8  8  DT DT B . n 
B 1 9  DT 9  9  9  DT DT B . n 
B 1 10 DC 10 10 10 DC DC B . n 
B 1 11 DG 11 11 11 DG DG B . n 
# 
_pdbx_nonpoly_scheme.asym_id         C 
_pdbx_nonpoly_scheme.entity_id       2 
_pdbx_nonpoly_scheme.mon_id          HP6 
_pdbx_nonpoly_scheme.ndb_seq_num     1 
_pdbx_nonpoly_scheme.pdb_seq_num     101 
_pdbx_nonpoly_scheme.auth_seq_num    12 
_pdbx_nonpoly_scheme.pdb_mon_id      HP6 
_pdbx_nonpoly_scheme.auth_mon_id     HP6 
_pdbx_nonpoly_scheme.pdb_strand_id   B 
_pdbx_nonpoly_scheme.pdb_ins_code    . 
# 
_exptl.absorpt_coefficient_mu     ? 
_exptl.absorpt_correction_T_max   ? 
_exptl.absorpt_correction_T_min   ? 
_exptl.absorpt_correction_type    ? 
_exptl.absorpt_process_details    ? 
_exptl.crystals_number            ? 
_exptl.details                    ? 
_exptl.entry_id                   2LZV 
_exptl.method                     'SOLUTION NMR' 
_exptl.method_details             ? 
# 
_struct.entry_id                  2LZV 
_struct.title                     'DNA duplex containing mispair-aligned O4U-heptylene-O4U interstrand cross-link' 
_struct.pdbx_model_details        'minimized average structure, model 1' 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   'minimized average' 
# 
_struct_keywords.entry_id        2LZV 
_struct_keywords.pdbx_keywords   DNA 
_struct_keywords.text            'INTERSTRAND CROSS-LINK, DNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 1 ? 
C N N 2 ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    2LZV 
_struct_ref.pdbx_db_accession          2LZV 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_db_isoform            ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 2LZV A 1 ? 11 ? 2LZV 1 ? 11 ? 1 11 
2 1 2LZV B 1 ? 11 ? 2LZV 1 ? 11 ? 1 11 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale none ? A DU 6  O4 ? ? ? 1_555 C HP6 .  C20 ? ? A DU 6  B HP6 101 1_555 ? ? ? ? ? ? ?            1.430 ? ? 
covale2  covale none ? B DU 6  O4 ? ? ? 1_555 C HP6 .  C26 ? ? B DU 6  B HP6 101 1_555 ? ? ? ? ? ? ?            1.429 ? ? 
hydrog1  hydrog ?    ? A DC 1  N3 ? ? ? 1_555 B DG  11 N1  ? ? A DC 1  B DG  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog2  hydrog ?    ? A DC 1  N4 ? ? ? 1_555 B DG  11 O6  ? ? A DC 1  B DG  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog3  hydrog ?    ? A DC 1  O2 ? ? ? 1_555 B DG  11 N2  ? ? A DC 1  B DG  11  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog4  hydrog ?    ? A DG 2  N1 ? ? ? 1_555 B DC  10 N3  ? ? A DG 2  B DC  10  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog5  hydrog ?    ? A DG 2  N2 ? ? ? 1_555 B DC  10 O2  ? ? A DG 2  B DC  10  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog6  hydrog ?    ? A DG 2  O6 ? ? ? 1_555 B DC  10 N4  ? ? A DG 2  B DC  10  1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog7  hydrog ?    ? A DA 3  N1 ? ? ? 1_555 B DT  9  N3  ? ? A DA 3  B DT  9   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog8  hydrog ?    ? A DA 3  N6 ? ? ? 1_555 B DT  9  O4  ? ? A DA 3  B DT  9   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog9  hydrog ?    ? A DA 4  N1 ? ? ? 1_555 B DT  8  N3  ? ? A DA 4  B DT  8   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog10 hydrog ?    ? A DA 4  N6 ? ? ? 1_555 B DT  8  O4  ? ? A DA 4  B DT  8   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog11 hydrog ?    ? A DA 5  N1 ? ? ? 1_555 B DT  7  N3  ? ? A DA 5  B DT  7   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog12 hydrog ?    ? A DA 5  N6 ? ? ? 1_555 B DT  7  O4  ? ? A DA 5  B DT  7   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog13 hydrog ?    ? A DT 7  N3 ? ? ? 1_555 B DA  5  N1  ? ? A DT 7  B DA  5   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog14 hydrog ?    ? A DT 7  O4 ? ? ? 1_555 B DA  5  N6  ? ? A DT 7  B DA  5   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog15 hydrog ?    ? A DT 8  N3 ? ? ? 1_555 B DA  4  N1  ? ? A DT 8  B DA  4   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog16 hydrog ?    ? A DT 8  O4 ? ? ? 1_555 B DA  4  N6  ? ? A DT 8  B DA  4   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog17 hydrog ?    ? A DT 9  N3 ? ? ? 1_555 B DA  3  N1  ? ? A DT 9  B DA  3   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog18 hydrog ?    ? A DT 9  O4 ? ? ? 1_555 B DA  3  N6  ? ? A DT 9  B DA  3   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog19 hydrog ?    ? A DC 10 N3 ? ? ? 1_555 B DG  2  N1  ? ? A DC 10 B DG  2   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog20 hydrog ?    ? A DC 10 N4 ? ? ? 1_555 B DG  2  O6  ? ? A DC 10 B DG  2   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog21 hydrog ?    ? A DC 10 O2 ? ? ? 1_555 B DG  2  N2  ? ? A DC 10 B DG  2   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog22 hydrog ?    ? A DG 11 N1 ? ? ? 1_555 B DC  1  N3  ? ? A DG 11 B DC  1   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog23 hydrog ?    ? A DG 11 N2 ? ? ? 1_555 B DC  1  O2  ? ? A DG 11 B DC  1   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
hydrog24 hydrog ?    ? A DG 11 O6 ? ? ? 1_555 B DC  1  N4  ? ? A DG 11 B DC  1   1_555 ? ? ? ? ? ? WATSON-CRICK ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
hydrog ? ? 
# 
_struct_site.id                   AC1 
_struct_site.pdbx_evidence_code   Software 
_struct_site.pdbx_auth_asym_id    B 
_struct_site.pdbx_auth_comp_id    HP6 
_struct_site.pdbx_auth_seq_id     101 
_struct_site.pdbx_auth_ins_code   ? 
_struct_site.pdbx_num_residues    2 
_struct_site.details              'BINDING SITE FOR RESIDUE HP6 B 101' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1 AC1 2 DU A 6 ? DU A 6 . ? 1_555 ? 
2 AC1 2 DU B 6 ? DU B 6 . ? 1_555 ? 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1  1  C4 A DU 6 ? ? O4 A DU 6 ? ? 1.373 1.232 0.141 0.008 N 
2  1  C4 B DU 6 ? ? O4 B DU 6 ? ? 1.372 1.232 0.140 0.008 N 
3  2  C4 A DU 6 ? ? O4 A DU 6 ? ? 1.372 1.232 0.140 0.008 N 
4  2  C4 B DU 6 ? ? O4 B DU 6 ? ? 1.372 1.232 0.140 0.008 N 
5  3  C4 A DU 6 ? ? O4 A DU 6 ? ? 1.373 1.232 0.141 0.008 N 
6  3  C4 B DU 6 ? ? O4 B DU 6 ? ? 1.372 1.232 0.140 0.008 N 
7  4  C4 A DU 6 ? ? O4 A DU 6 ? ? 1.374 1.232 0.142 0.008 N 
8  4  C4 B DU 6 ? ? O4 B DU 6 ? ? 1.372 1.232 0.140 0.008 N 
9  5  C4 A DU 6 ? ? O4 A DU 6 ? ? 1.375 1.232 0.143 0.008 N 
10 5  C4 B DU 6 ? ? O4 B DU 6 ? ? 1.375 1.232 0.143 0.008 N 
11 6  C4 A DU 6 ? ? O4 A DU 6 ? ? 1.372 1.232 0.140 0.008 N 
12 6  C4 B DU 6 ? ? O4 B DU 6 ? ? 1.373 1.232 0.141 0.008 N 
13 7  C4 A DU 6 ? ? O4 A DU 6 ? ? 1.373 1.232 0.141 0.008 N 
14 7  C4 B DU 6 ? ? O4 B DU 6 ? ? 1.371 1.232 0.139 0.008 N 
15 8  C4 A DU 6 ? ? O4 A DU 6 ? ? 1.373 1.232 0.141 0.008 N 
16 8  C4 B DU 6 ? ? O4 B DU 6 ? ? 1.372 1.232 0.140 0.008 N 
17 9  C4 A DU 6 ? ? O4 A DU 6 ? ? 1.374 1.232 0.142 0.008 N 
18 9  C4 B DU 6 ? ? O4 B DU 6 ? ? 1.372 1.232 0.140 0.008 N 
19 10 C4 A DU 6 ? ? O4 A DU 6 ? ? 1.373 1.232 0.141 0.008 N 
20 10 C4 B DU 6 ? ? O4 B DU 6 ? ? 1.372 1.232 0.140 0.008 N 
21 11 C4 A DU 6 ? ? O4 A DU 6 ? ? 1.373 1.232 0.141 0.008 N 
22 11 C4 B DU 6 ? ? O4 B DU 6 ? ? 1.373 1.232 0.141 0.008 N 
# 
_pdbx_nmr_ensemble.average_constraint_violations_per_residue     ? 
_pdbx_nmr_ensemble.average_constraints_per_residue               ? 
_pdbx_nmr_ensemble.average_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.average_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.conformer_selection_criteria                  
'structures with the least restraint violations and the lowest energy' 
_pdbx_nmr_ensemble.conformers_calculated_total_number            20 
_pdbx_nmr_ensemble.conformers_submitted_total_number             11 
_pdbx_nmr_ensemble.distance_constraint_violation_method          ? 
_pdbx_nmr_ensemble.entry_id                                      2LZV 
_pdbx_nmr_ensemble.maximum_distance_constraint_violation         ? 
_pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation    ? 
_pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation   ? 
_pdbx_nmr_ensemble.torsion_angle_constraint_violation_method     ? 
# 
_pdbx_nmr_representative.conformer_id         1 
_pdbx_nmr_representative.entry_id             2LZV 
_pdbx_nmr_representative.selection_criteria   'minimized average structure' 
# 
loop_
_pdbx_nmr_sample_details.contents 
_pdbx_nmr_sample_details.solution_id 
_pdbx_nmr_sample_details.solvent_system 
;0.5 mM DNA (5'-D(*CP*GP*AP*AP*AP*UP*TP*TP*TP*CP*G)-3'), 100% D2O
;
1 '100% D2O'        
;0.5 mM DNA (5'-D(*CP*GP*AP*AP*AP*UP*TP*TP*TP*CP*G)-3'), 90% H2O/10% D2O
;
2 '90% H2O/10% D2O' 
# 
loop_
_pdbx_nmr_exptl_sample.component 
_pdbx_nmr_exptl_sample.concentration 
_pdbx_nmr_exptl_sample.concentration_range 
_pdbx_nmr_exptl_sample.concentration_units 
_pdbx_nmr_exptl_sample.isotopic_labeling 
_pdbx_nmr_exptl_sample.solution_id 
;DNA (5'-D(*CP*GP*AP*AP*AP*UP*TP*TP*TP*CP*G)-3')-1
;
0.5 ? mM ? 1 
;DNA (5'-D(*CP*GP*AP*AP*AP*UP*TP*TP*TP*CP*G)-3')-2
;
0.5 ? mM ? 2 
# 
loop_
_pdbx_nmr_exptl_sample_conditions.conditions_id 
_pdbx_nmr_exptl_sample_conditions.ionic_strength 
_pdbx_nmr_exptl_sample_conditions.pH 
_pdbx_nmr_exptl_sample_conditions.pressure 
_pdbx_nmr_exptl_sample_conditions.pressure_units 
_pdbx_nmr_exptl_sample_conditions.temperature 
_pdbx_nmr_exptl_sample_conditions.temperature_units 
1 0.1 7.5 ambient ? 298 K 
2 0.1 7.5 ambient ? 273 K 
# 
loop_
_pdbx_nmr_exptl.conditions_id 
_pdbx_nmr_exptl.experiment_id 
_pdbx_nmr_exptl.solution_id 
_pdbx_nmr_exptl.type 
1 1 1 '2D NOESY'       
1 2 1 '2D TOCSY'       
1 3 1 '2D DQF-COSY'    
1 4 1 '2D 1H-31P HSQC' 
2 5 2 '2D NOESY'       
# 
_pdbx_nmr_refine.entry_id           2LZV 
_pdbx_nmr_refine.method             'simulated annealing' 
_pdbx_nmr_refine.details            ? 
_pdbx_nmr_refine.software_ordinal   1 
# 
loop_
_pdbx_nmr_software.authors 
_pdbx_nmr_software.classification 
_pdbx_nmr_software.name 
_pdbx_nmr_software.version 
_pdbx_nmr_software.ordinal 
'Brunger, Adams, Clore, Gros, Nilges and Read'      refinement      CNS     1.2 1 
'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing      NMRPipe ?   2 
'Johnson, One Moon Scientific'                      'data analysis' NMRView ?   3 
Varian                                              collection      VnmrJ   ?   4 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
DA  OP3    O N N 1   
DA  P      P N N 2   
DA  OP1    O N N 3   
DA  OP2    O N N 4   
DA  "O5'"  O N N 5   
DA  "C5'"  C N N 6   
DA  "C4'"  C N R 7   
DA  "O4'"  O N N 8   
DA  "C3'"  C N S 9   
DA  "O3'"  O N N 10  
DA  "C2'"  C N N 11  
DA  "C1'"  C N R 12  
DA  N9     N Y N 13  
DA  C8     C Y N 14  
DA  N7     N Y N 15  
DA  C5     C Y N 16  
DA  C6     C Y N 17  
DA  N6     N N N 18  
DA  N1     N Y N 19  
DA  C2     C Y N 20  
DA  N3     N Y N 21  
DA  C4     C Y N 22  
DA  HOP3   H N N 23  
DA  HOP2   H N N 24  
DA  "H5'"  H N N 25  
DA  "H5''" H N N 26  
DA  "H4'"  H N N 27  
DA  "H3'"  H N N 28  
DA  "HO3'" H N N 29  
DA  "H2'"  H N N 30  
DA  "H2''" H N N 31  
DA  "H1'"  H N N 32  
DA  H8     H N N 33  
DA  H61    H N N 34  
DA  H62    H N N 35  
DA  H2     H N N 36  
DC  OP3    O N N 37  
DC  P      P N N 38  
DC  OP1    O N N 39  
DC  OP2    O N N 40  
DC  "O5'"  O N N 41  
DC  "C5'"  C N N 42  
DC  "C4'"  C N R 43  
DC  "O4'"  O N N 44  
DC  "C3'"  C N S 45  
DC  "O3'"  O N N 46  
DC  "C2'"  C N N 47  
DC  "C1'"  C N R 48  
DC  N1     N N N 49  
DC  C2     C N N 50  
DC  O2     O N N 51  
DC  N3     N N N 52  
DC  C4     C N N 53  
DC  N4     N N N 54  
DC  C5     C N N 55  
DC  C6     C N N 56  
DC  HOP3   H N N 57  
DC  HOP2   H N N 58  
DC  "H5'"  H N N 59  
DC  "H5''" H N N 60  
DC  "H4'"  H N N 61  
DC  "H3'"  H N N 62  
DC  "HO3'" H N N 63  
DC  "H2'"  H N N 64  
DC  "H2''" H N N 65  
DC  "H1'"  H N N 66  
DC  H41    H N N 67  
DC  H42    H N N 68  
DC  H5     H N N 69  
DC  H6     H N N 70  
DG  OP3    O N N 71  
DG  P      P N N 72  
DG  OP1    O N N 73  
DG  OP2    O N N 74  
DG  "O5'"  O N N 75  
DG  "C5'"  C N N 76  
DG  "C4'"  C N R 77  
DG  "O4'"  O N N 78  
DG  "C3'"  C N S 79  
DG  "O3'"  O N N 80  
DG  "C2'"  C N N 81  
DG  "C1'"  C N R 82  
DG  N9     N Y N 83  
DG  C8     C Y N 84  
DG  N7     N Y N 85  
DG  C5     C Y N 86  
DG  C6     C N N 87  
DG  O6     O N N 88  
DG  N1     N N N 89  
DG  C2     C N N 90  
DG  N2     N N N 91  
DG  N3     N N N 92  
DG  C4     C Y N 93  
DG  HOP3   H N N 94  
DG  HOP2   H N N 95  
DG  "H5'"  H N N 96  
DG  "H5''" H N N 97  
DG  "H4'"  H N N 98  
DG  "H3'"  H N N 99  
DG  "HO3'" H N N 100 
DG  "H2'"  H N N 101 
DG  "H2''" H N N 102 
DG  "H1'"  H N N 103 
DG  H8     H N N 104 
DG  H1     H N N 105 
DG  H21    H N N 106 
DG  H22    H N N 107 
DT  OP3    O N N 108 
DT  P      P N N 109 
DT  OP1    O N N 110 
DT  OP2    O N N 111 
DT  "O5'"  O N N 112 
DT  "C5'"  C N N 113 
DT  "C4'"  C N R 114 
DT  "O4'"  O N N 115 
DT  "C3'"  C N S 116 
DT  "O3'"  O N N 117 
DT  "C2'"  C N N 118 
DT  "C1'"  C N R 119 
DT  N1     N N N 120 
DT  C2     C N N 121 
DT  O2     O N N 122 
DT  N3     N N N 123 
DT  C4     C N N 124 
DT  O4     O N N 125 
DT  C5     C N N 126 
DT  C7     C N N 127 
DT  C6     C N N 128 
DT  HOP3   H N N 129 
DT  HOP2   H N N 130 
DT  "H5'"  H N N 131 
DT  "H5''" H N N 132 
DT  "H4'"  H N N 133 
DT  "H3'"  H N N 134 
DT  "HO3'" H N N 135 
DT  "H2'"  H N N 136 
DT  "H2''" H N N 137 
DT  "H1'"  H N N 138 
DT  H3     H N N 139 
DT  H71    H N N 140 
DT  H72    H N N 141 
DT  H73    H N N 142 
DT  H6     H N N 143 
DU  OP3    O N N 144 
DU  P      P N N 145 
DU  OP1    O N N 146 
DU  OP2    O N N 147 
DU  "O5'"  O N N 148 
DU  "C5'"  C N N 149 
DU  "C4'"  C N R 150 
DU  "O4'"  O N N 151 
DU  "C3'"  C N S 152 
DU  "O3'"  O N N 153 
DU  "C2'"  C N N 154 
DU  "C1'"  C N R 155 
DU  N1     N N N 156 
DU  C2     C N N 157 
DU  O2     O N N 158 
DU  N3     N N N 159 
DU  C4     C N N 160 
DU  O4     O N N 161 
DU  C5     C N N 162 
DU  C6     C N N 163 
DU  HOP3   H N N 164 
DU  HOP2   H N N 165 
DU  "H5'"  H N N 166 
DU  "H5''" H N N 167 
DU  "H4'"  H N N 168 
DU  "H3'"  H N N 169 
DU  "HO3'" H N N 170 
DU  "H2'"  H N N 171 
DU  "H2''" H N N 172 
DU  "H1'"  H N N 173 
DU  H3     H N N 174 
DU  H5     H N N 175 
DU  H6     H N N 176 
HP6 C20    C N N 177 
HP6 C21    C N N 178 
HP6 C22    C N N 179 
HP6 C23    C N N 180 
HP6 C24    C N N 181 
HP6 C25    C N N 182 
HP6 C26    C N N 183 
HP6 H201   H N N 184 
HP6 H202   H N N 185 
HP6 H203   H N N 186 
HP6 H211   H N N 187 
HP6 H212   H N N 188 
HP6 H221   H N N 189 
HP6 H222   H N N 190 
HP6 H231   H N N 191 
HP6 H232   H N N 192 
HP6 H241   H N N 193 
HP6 H242   H N N 194 
HP6 H251   H N N 195 
HP6 H252   H N N 196 
HP6 H261   H N N 197 
HP6 H262   H N N 198 
HP6 H263   H N N 199 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DA  OP3   P      sing N N 1   
DA  OP3   HOP3   sing N N 2   
DA  P     OP1    doub N N 3   
DA  P     OP2    sing N N 4   
DA  P     "O5'"  sing N N 5   
DA  OP2   HOP2   sing N N 6   
DA  "O5'" "C5'"  sing N N 7   
DA  "C5'" "C4'"  sing N N 8   
DA  "C5'" "H5'"  sing N N 9   
DA  "C5'" "H5''" sing N N 10  
DA  "C4'" "O4'"  sing N N 11  
DA  "C4'" "C3'"  sing N N 12  
DA  "C4'" "H4'"  sing N N 13  
DA  "O4'" "C1'"  sing N N 14  
DA  "C3'" "O3'"  sing N N 15  
DA  "C3'" "C2'"  sing N N 16  
DA  "C3'" "H3'"  sing N N 17  
DA  "O3'" "HO3'" sing N N 18  
DA  "C2'" "C1'"  sing N N 19  
DA  "C2'" "H2'"  sing N N 20  
DA  "C2'" "H2''" sing N N 21  
DA  "C1'" N9     sing N N 22  
DA  "C1'" "H1'"  sing N N 23  
DA  N9    C8     sing Y N 24  
DA  N9    C4     sing Y N 25  
DA  C8    N7     doub Y N 26  
DA  C8    H8     sing N N 27  
DA  N7    C5     sing Y N 28  
DA  C5    C6     sing Y N 29  
DA  C5    C4     doub Y N 30  
DA  C6    N6     sing N N 31  
DA  C6    N1     doub Y N 32  
DA  N6    H61    sing N N 33  
DA  N6    H62    sing N N 34  
DA  N1    C2     sing Y N 35  
DA  C2    N3     doub Y N 36  
DA  C2    H2     sing N N 37  
DA  N3    C4     sing Y N 38  
DC  OP3   P      sing N N 39  
DC  OP3   HOP3   sing N N 40  
DC  P     OP1    doub N N 41  
DC  P     OP2    sing N N 42  
DC  P     "O5'"  sing N N 43  
DC  OP2   HOP2   sing N N 44  
DC  "O5'" "C5'"  sing N N 45  
DC  "C5'" "C4'"  sing N N 46  
DC  "C5'" "H5'"  sing N N 47  
DC  "C5'" "H5''" sing N N 48  
DC  "C4'" "O4'"  sing N N 49  
DC  "C4'" "C3'"  sing N N 50  
DC  "C4'" "H4'"  sing N N 51  
DC  "O4'" "C1'"  sing N N 52  
DC  "C3'" "O3'"  sing N N 53  
DC  "C3'" "C2'"  sing N N 54  
DC  "C3'" "H3'"  sing N N 55  
DC  "O3'" "HO3'" sing N N 56  
DC  "C2'" "C1'"  sing N N 57  
DC  "C2'" "H2'"  sing N N 58  
DC  "C2'" "H2''" sing N N 59  
DC  "C1'" N1     sing N N 60  
DC  "C1'" "H1'"  sing N N 61  
DC  N1    C2     sing N N 62  
DC  N1    C6     sing N N 63  
DC  C2    O2     doub N N 64  
DC  C2    N3     sing N N 65  
DC  N3    C4     doub N N 66  
DC  C4    N4     sing N N 67  
DC  C4    C5     sing N N 68  
DC  N4    H41    sing N N 69  
DC  N4    H42    sing N N 70  
DC  C5    C6     doub N N 71  
DC  C5    H5     sing N N 72  
DC  C6    H6     sing N N 73  
DG  OP3   P      sing N N 74  
DG  OP3   HOP3   sing N N 75  
DG  P     OP1    doub N N 76  
DG  P     OP2    sing N N 77  
DG  P     "O5'"  sing N N 78  
DG  OP2   HOP2   sing N N 79  
DG  "O5'" "C5'"  sing N N 80  
DG  "C5'" "C4'"  sing N N 81  
DG  "C5'" "H5'"  sing N N 82  
DG  "C5'" "H5''" sing N N 83  
DG  "C4'" "O4'"  sing N N 84  
DG  "C4'" "C3'"  sing N N 85  
DG  "C4'" "H4'"  sing N N 86  
DG  "O4'" "C1'"  sing N N 87  
DG  "C3'" "O3'"  sing N N 88  
DG  "C3'" "C2'"  sing N N 89  
DG  "C3'" "H3'"  sing N N 90  
DG  "O3'" "HO3'" sing N N 91  
DG  "C2'" "C1'"  sing N N 92  
DG  "C2'" "H2'"  sing N N 93  
DG  "C2'" "H2''" sing N N 94  
DG  "C1'" N9     sing N N 95  
DG  "C1'" "H1'"  sing N N 96  
DG  N9    C8     sing Y N 97  
DG  N9    C4     sing Y N 98  
DG  C8    N7     doub Y N 99  
DG  C8    H8     sing N N 100 
DG  N7    C5     sing Y N 101 
DG  C5    C6     sing N N 102 
DG  C5    C4     doub Y N 103 
DG  C6    O6     doub N N 104 
DG  C6    N1     sing N N 105 
DG  N1    C2     sing N N 106 
DG  N1    H1     sing N N 107 
DG  C2    N2     sing N N 108 
DG  C2    N3     doub N N 109 
DG  N2    H21    sing N N 110 
DG  N2    H22    sing N N 111 
DG  N3    C4     sing N N 112 
DT  OP3   P      sing N N 113 
DT  OP3   HOP3   sing N N 114 
DT  P     OP1    doub N N 115 
DT  P     OP2    sing N N 116 
DT  P     "O5'"  sing N N 117 
DT  OP2   HOP2   sing N N 118 
DT  "O5'" "C5'"  sing N N 119 
DT  "C5'" "C4'"  sing N N 120 
DT  "C5'" "H5'"  sing N N 121 
DT  "C5'" "H5''" sing N N 122 
DT  "C4'" "O4'"  sing N N 123 
DT  "C4'" "C3'"  sing N N 124 
DT  "C4'" "H4'"  sing N N 125 
DT  "O4'" "C1'"  sing N N 126 
DT  "C3'" "O3'"  sing N N 127 
DT  "C3'" "C2'"  sing N N 128 
DT  "C3'" "H3'"  sing N N 129 
DT  "O3'" "HO3'" sing N N 130 
DT  "C2'" "C1'"  sing N N 131 
DT  "C2'" "H2'"  sing N N 132 
DT  "C2'" "H2''" sing N N 133 
DT  "C1'" N1     sing N N 134 
DT  "C1'" "H1'"  sing N N 135 
DT  N1    C2     sing N N 136 
DT  N1    C6     sing N N 137 
DT  C2    O2     doub N N 138 
DT  C2    N3     sing N N 139 
DT  N3    C4     sing N N 140 
DT  N3    H3     sing N N 141 
DT  C4    O4     doub N N 142 
DT  C4    C5     sing N N 143 
DT  C5    C7     sing N N 144 
DT  C5    C6     doub N N 145 
DT  C7    H71    sing N N 146 
DT  C7    H72    sing N N 147 
DT  C7    H73    sing N N 148 
DT  C6    H6     sing N N 149 
DU  OP3   P      sing N N 150 
DU  OP3   HOP3   sing N N 151 
DU  P     OP1    doub N N 152 
DU  P     OP2    sing N N 153 
DU  P     "O5'"  sing N N 154 
DU  OP2   HOP2   sing N N 155 
DU  "O5'" "C5'"  sing N N 156 
DU  "C5'" "C4'"  sing N N 157 
DU  "C5'" "H5'"  sing N N 158 
DU  "C5'" "H5''" sing N N 159 
DU  "C4'" "O4'"  sing N N 160 
DU  "C4'" "C3'"  sing N N 161 
DU  "C4'" "H4'"  sing N N 162 
DU  "O4'" "C1'"  sing N N 163 
DU  "C3'" "O3'"  sing N N 164 
DU  "C3'" "C2'"  sing N N 165 
DU  "C3'" "H3'"  sing N N 166 
DU  "O3'" "HO3'" sing N N 167 
DU  "C2'" "C1'"  sing N N 168 
DU  "C2'" "H2'"  sing N N 169 
DU  "C2'" "H2''" sing N N 170 
DU  "C1'" N1     sing N N 171 
DU  "C1'" "H1'"  sing N N 172 
DU  N1    C2     sing N N 173 
DU  N1    C6     sing N N 174 
DU  C2    O2     doub N N 175 
DU  C2    N3     sing N N 176 
DU  N3    C4     sing N N 177 
DU  N3    H3     sing N N 178 
DU  C4    O4     doub N N 179 
DU  C4    C5     sing N N 180 
DU  C5    C6     doub N N 181 
DU  C5    H5     sing N N 182 
DU  C6    H6     sing N N 183 
HP6 C20   C21    sing N N 184 
HP6 C20   H201   sing N N 185 
HP6 C20   H202   sing N N 186 
HP6 C20   H203   sing N N 187 
HP6 C21   C22    sing N N 188 
HP6 C21   H211   sing N N 189 
HP6 C21   H212   sing N N 190 
HP6 C22   C23    sing N N 191 
HP6 C22   H221   sing N N 192 
HP6 C22   H222   sing N N 193 
HP6 C23   C24    sing N N 194 
HP6 C23   H231   sing N N 195 
HP6 C23   H232   sing N N 196 
HP6 C24   C25    sing N N 197 
HP6 C24   H241   sing N N 198 
HP6 C24   H242   sing N N 199 
HP6 C25   C26    sing N N 200 
HP6 C25   H251   sing N N 201 
HP6 C25   H252   sing N N 202 
HP6 C26   H261   sing N N 203 
HP6 C26   H262   sing N N 204 
HP6 C26   H263   sing N N 205 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
2LZV 'b-form double helix'  
2LZV 'mismatched base pair' 
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A DC 1  1_555 B DG 11 1_555 -0.480 -0.455 -1.124 7.521   17.724  -11.915 1  A_DC1:DG11_B A 1  ? B 11 ? 19 1 
1 A DG 2  1_555 B DC 10 1_555 -0.117 -0.253 -0.595 -1.369  -5.625  3.618   2  A_DG2:DC10_B A 2  ? B 10 ? 19 1 
1 A DA 3  1_555 B DT 9  1_555 -0.189 -0.264 -0.279 -1.331  -3.277  7.713   3  A_DA3:DT9_B  A 3  ? B 9  ? 20 1 
1 A DA 4  1_555 B DT 8  1_555 0.079  -0.300 -0.186 7.129   -3.478  3.253   4  A_DA4:DT8_B  A 4  ? B 8  ? 20 1 
1 A DA 5  1_555 B DT 7  1_555 -0.062 -0.145 0.006  15.164  -10.143 -6.125  5  A_DA5:DT7_B  A 5  ? B 7  ? 20 1 
1 A DT 7  1_555 B DA 5  1_555 0.066  -0.143 0.013  -15.103 -9.968  -6.254  6  A_DT7:DA5_B  A 7  ? B 5  ? 20 1 
1 A DT 8  1_555 B DA 4  1_555 -0.065 -0.300 -0.184 -7.118  -3.382  3.231   7  A_DT8:DA4_B  A 8  ? B 4  ? 20 1 
1 A DT 9  1_555 B DA 3  1_555 0.204  -0.272 -0.276 1.303   -3.174  7.490   8  A_DT9:DA3_B  A 9  ? B 3  ? 20 1 
1 A DC 10 1_555 B DG 2  1_555 0.127  -0.266 -0.581 1.486   -5.664  3.567   9  A_DC10:DG2_B A 10 ? B 2  ? 19 1 
1 A DG 11 1_555 B DC 1  1_555 0.481  -0.470 -1.104 -7.103  17.822  -11.829 10 A_DG11:DC1_B A 11 ? B 1  ? 19 1 
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A DC 1  1_555 B DG 11 1_555 A DG 2  1_555 B DC 10 1_555 0.956  -0.485 4.121 -2.056 25.930 25.452 -5.181 -1.885 2.524 46.211 
3.664  36.238 1 AA_DC1DG2:DC10DG11_BB A 1  ? B 11 ? A 2  ? B 10 ? 
1 A DG 2  1_555 B DC 10 1_555 A DA 3  1_555 B DT 9  1_555 0.303  -0.479 3.009 -3.052 12.290 33.616 -2.353 -0.884 2.642 20.374 
5.060  35.858 2 AA_DG2DA3:DT9DC10_BB  A 2  ? B 10 ? A 3  ? B 9  ? 
1 A DA 3  1_555 B DT 9  1_555 A DA 4  1_555 B DT 8  1_555 -0.541 -0.395 2.975 -1.031 11.865 31.685 -2.394 0.782  2.675 20.833 
1.809  33.795 3 AA_DA3DA4:DT8DT9_BB   A 3  ? B 9  ? A 4  ? B 8  ? 
1 A DA 4  1_555 B DT 8  1_555 A DA 5  1_555 B DT 7  1_555 -1.286 0.222  2.949 -2.206 6.296  36.954 -0.410 1.733  3.014 9.834  
3.445  37.530 4 AA_DA4DA5:DT7DT8_BB   A 4  ? B 8  ? A 5  ? B 7  ? 
1 A DT 7  1_555 B DA 5  1_555 A DT 8  1_555 B DA 4  1_555 1.289  0.218  2.950 2.271  6.314  37.021 -0.418 -1.729 3.016 9.845  
-3.540 37.603 5 AA_DT7DT8:DA4DA5_BB   A 7  ? B 5  ? A 8  ? B 4  ? 
1 A DT 8  1_555 B DA 4  1_555 A DT 9  1_555 B DA 3  1_555 0.536  -0.397 2.977 1.070  11.861 31.685 -2.398 -0.768 2.676 20.826 
-1.879 33.795 6 AA_DT8DT9:DA3DA4_BB   A 8  ? B 4  ? A 9  ? B 3  ? 
1 A DT 9  1_555 B DA 3  1_555 A DC 10 1_555 B DG 2  1_555 -0.298 -0.484 3.009 3.020  12.147 33.613 -2.349 0.874  2.646 20.157 
-5.012 35.805 7 AA_DT9DC10:DG2DA3_BB  A 9  ? B 3  ? A 10 ? B 2  ? 
1 A DC 10 1_555 B DG 2  1_555 A DG 11 1_555 B DC 1  1_555 -0.949 -0.491 4.111 2.105  25.922 25.511 -5.164 1.880  2.517 46.135 
-3.746 36.276 8 AA_DC10DG11:DC1DG2_BB A 10 ? B 2  ? A 11 ? B 1  ? 
# 
loop_
_pdbx_nmr_spectrometer.field_strength 
_pdbx_nmr_spectrometer.manufacturer 
_pdbx_nmr_spectrometer.model 
_pdbx_nmr_spectrometer.spectrometer_id 
_pdbx_nmr_spectrometer.type 
500 Varian 'Unity Inova' 1 'Varian Unity Inova' 
800 Varian 'Unity Inova' 2 'Varian Unity Inova' 
500 Varian VNMRS         3 'Varian VNMRS'       
# 
_atom_sites.entry_id                    2LZV 
_atom_sites.fract_transf_matrix[1][1]   1.000000 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   1.000000 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   1.000000 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
P 
# 
loop_