HEADER DNA 11-OCT-12 2LZW TITLE DNA DUPLEX CONTAINING MISPAIR-ALIGNED O6G-HEPTYLENE-O6G INTERSTRAND TITLE 2 CROSS-LINK COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS INTERSTRAND CROSS-LINK, DNA EXPDTA SOLUTION NMR NUMMDL 11 MDLTYP MINIMIZED AVERAGE AUTHOR A.Y.DENISOV,F.P.MCMANUS,A.M.NORONHA,C.J.WILDS REVDAT 4 14-JUN-23 2LZW 1 REMARK REVDAT 3 24-AUG-22 2LZW 1 JRNL REMARK LINK REVDAT 2 04-OCT-17 2LZW 1 SOURCE JRNL REVDAT 1 16-OCT-13 2LZW 0 JRNL AUTH A.Y.DENISOV,F.P.MCMANUS,D.K.O'FLAHERTY,A.M.NORONHA,C.J.WILDS JRNL TITL STRUCTURAL BASIS OF INTERSTRAND CROSS-LINK REPAIR BY O 6 JRNL TITL 2 -ALKYLGUANINE DNA ALKYLTRANSFERASE. JRNL REF ORG.BIOMOL.CHEM. V. 15 8361 2017 JRNL REFN ESSN 1477-0539 JRNL PMID 28937154 JRNL DOI 10.1039/C7OB02093G REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2LZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000103032. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 273 REMARK 210 PH : 7.5; 7.5 REMARK 210 IONIC STRENGTH : 0.1; 0.1 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM DNA (5' REMARK 210 -D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), 100% D2O; 1 MM DNA (5'- REMARK 210 D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 2D DQF-COSY; REMARK 210 2D 1H-31P HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : UNITY INOVA; VNMRS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, VNMRJ REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 11 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS AND THE REMARK 210 LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DG A 6 C6 DG A 6 O6 0.134 REMARK 500 1 DG B 6 C6 DG B 6 O6 0.134 REMARK 500 2 DG A 6 C6 DG A 6 O6 0.137 REMARK 500 2 DG B 6 C6 DG B 6 O6 0.136 REMARK 500 3 DG A 6 C6 DG A 6 O6 0.135 REMARK 500 3 DG B 6 C6 DG B 6 O6 0.135 REMARK 500 4 DG A 6 C6 DG A 6 O6 0.135 REMARK 500 4 DG B 6 C6 DG B 6 O6 0.134 REMARK 500 5 DG A 6 C6 DG A 6 O6 0.135 REMARK 500 5 DG B 6 C6 DG B 6 O6 0.135 REMARK 500 6 DG A 6 C6 DG A 6 O6 0.134 REMARK 500 6 DG B 6 C6 DG B 6 O6 0.135 REMARK 500 7 DG A 6 C6 DG A 6 O6 0.135 REMARK 500 7 DG B 6 C6 DG B 6 O6 0.136 REMARK 500 8 DG A 6 C6 DG A 6 O6 0.135 REMARK 500 8 DG B 6 C6 DG B 6 O6 0.135 REMARK 500 9 DG A 6 C6 DG A 6 O6 0.133 REMARK 500 9 DG B 6 C6 DG B 6 O6 0.134 REMARK 500 10 DG A 6 C6 DG A 6 O6 0.135 REMARK 500 10 DG B 6 C6 DG B 6 O6 0.134 REMARK 500 11 DG A 6 C6 DG A 6 O6 0.135 REMARK 500 11 DG B 6 C6 DG B 6 O6 0.134 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HP6 B 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1N4B RELATED DB: PDB REMARK 900 RELATED ID: 1S37 RELATED DB: PDB REMARK 900 RELATED ID: 1XCI RELATED DB: PDB REMARK 900 RELATED ID: 2LZV RELATED DB: PDB REMARK 900 RELATED ID: 18781 RELATED DB: BMRB DBREF 2LZW A 1 11 PDB 2LZW 2LZW 1 11 DBREF 2LZW B 1 11 PDB 2LZW 2LZW 1 11 SEQRES 1 A 11 DC DG DA DA DA DG DT DT DT DC DG SEQRES 1 B 11 DC DG DA DA DA DG DT DT DT DC DG HET HP6 B 101 21 HETNAM HP6 HEPTANE FORMUL 3 HP6 C7 H16 LINK O6 DG A 6 C20 HP6 B 101 1555 1555 1.43 LINK O6 DG B 6 C26 HP6 B 101 1555 1555 1.43 SITE 1 AC1 2 DG A 6 DG B 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1