HEADER MOTOR PROTEIN 15-OCT-12 2M02 TITLE 3D STRUCTURE OF CAP-GLY DOMAIN OF MAMMALIAN DYNACTIN DETERMINED BY TITLE 2 MAGIC ANGLE SPINNING NMR SPECTROSCOPY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNACTIN SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CAP-GLY DOMAIN OF P150GLUED SUBUNIT OF DYNACTIN; COMPND 5 SYNONYM: 150 KDA DYNEIN-ASSOCIATED POLYPEPTIDE, DAP-150, DP-150, COMPND 6 P150-GLUED; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DCTN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B-HIS6-SMT3 KEYWDS MOTOR PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR S.YAN,G.HOU,C.D.SCHWIETERS,S.AHMED,J.C.WILLIAMS,T.POLENOVA REVDAT 7 14-JUN-23 2M02 1 REMARK REVDAT 6 03-NOV-21 2M02 1 REMARK REVDAT 5 25-JUN-14 2M02 1 AUTHOR REVDAT 4 13-NOV-13 2M02 1 JRNL REVDAT 3 26-JUN-13 2M02 1 JRNL REVDAT 2 22-MAY-13 2M02 1 JRNL REVDAT 1 08-MAY-13 2M02 0 JRNL AUTH S.YAN,G.HOU,C.D.SCHWIETERS,S.AHMED,J.C.WILLIAMS,T.POLENOVA JRNL TITL THREE-DIMENSIONAL STRUCTURE OF CAP-GLY DOMAIN OF MAMMALIAN JRNL TITL 2 DYNACTIN DETERMINED BY MAGIC ANGLE SPINNING NMR JRNL TITL 3 SPECTROSCOPY: CONFORMATIONAL PLASTICITY AND INTERACTIONS JRNL TITL 4 WITH END-BINDING PROTEIN EB1. JRNL REF J.MOL.BIOL. V. 425 4249 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23648839 JRNL DOI 10.1016/J.JMB.2013.04.027 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.SUN,A.SIGLIN,J.C.WILLIAMS,T.POLENOVA REMARK 1 TITL SOLID-STATE AND SOLUTION NMR STUDIES OF THE CAP-GLY DOMAIN REMARK 1 TITL 2 OF MAMMALIAN DYNACTIN AND ITS INTERACTION WITH MICROTUBULES. REMARK 1 REF J.AM.CHEM.SOC. V. 131 10113 2009 REMARK 1 REFN ISSN 0002-7863 REMARK 1 PMID 19580321 REMARK 1 DOI 10.1021/JA902003U REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.29 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000103038. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 256.3; 271; 271; 276 REMARK 210 PH : 6.0; 6.0; 6.0; 6.0 REMARK 210 IONIC STRENGTH : 30; 30; 30; 30 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT REMARK 210 SAMPLE CONTENTS : 4.2 MM [U-100% 13C; U-100% 15N] REMARK 210 CAP-GLY, 100% H2O; 4.2 MM [2-13C] REMARK 210 -GLYCEROL; U-100% 15N CAP-GLY, REMARK 210 100% H2O; 4.2 MM [1,3-13C]- REMARK 210 GLYCEROL; U-100% 15N CAP-GLY, REMARK 210 100% H2O; 4.2 MM [U-13C; U-15N] REMARK 210 CAP-GLY, 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DARR; NCA; NCO; NCACB; NCACX; REMARK 210 CTUC-COCA; CTUC-CACB; CTUC-NCOCA; REMARK 210 NCOCX; RDSD; CANCX REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 900 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INFINITYPLUS; INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, REMARK 210 ROLAND_NMR_TOOLKIT, X-PLOR NIH REMARK 210 2.29, TALOS+ 3.70F1 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 SER A 19 REMARK 465 THR A 20 REMARK 465 GLU A 21 REMARK 465 ALA A 22 REMARK 465 SER A 23 REMARK 465 ALA A 24 REMARK 465 ARG A 25 REMARK 465 PRO A 26 REMARK 465 GLU A 98 REMARK 465 ASP A 99 REMARK 465 GLY A 100 REMARK 465 ALA A 101 REMARK 465 ASP A 102 REMARK 465 THR A 103 REMARK 465 THR A 104 REMARK 465 SER A 105 REMARK 465 PRO A 106 REMARK 465 GLU A 107 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 38 -136.23 -161.83 REMARK 500 1 HIS A 40 175.56 -45.59 REMARK 500 1 GLN A 74 19.38 55.76 REMARK 500 2 LYS A 38 -132.80 -163.02 REMARK 500 2 HIS A 40 177.63 -46.92 REMARK 500 2 ALA A 65 94.75 -57.85 REMARK 500 2 LYS A 68 129.52 -171.54 REMARK 500 3 LYS A 38 -135.33 -163.07 REMARK 500 3 HIS A 40 174.72 -44.45 REMARK 500 3 ALA A 45 -50.43 -127.78 REMARK 500 3 ALA A 65 94.09 -63.52 REMARK 500 4 LYS A 38 -141.14 -154.31 REMARK 500 4 HIS A 40 177.11 -45.39 REMARK 500 4 LYS A 68 132.99 -171.38 REMARK 500 5 LYS A 38 -135.10 -163.34 REMARK 500 5 HIS A 40 175.03 -45.92 REMARK 500 5 ALA A 65 95.56 -67.48 REMARK 500 6 LYS A 38 -138.62 -162.46 REMARK 500 6 HIS A 40 174.71 -45.17 REMARK 500 7 LYS A 38 -136.93 -163.79 REMARK 500 7 HIS A 40 173.81 -44.58 REMARK 500 8 LYS A 38 -145.09 -155.42 REMARK 500 8 HIS A 40 177.62 -45.65 REMARK 500 8 ALA A 45 -38.79 -130.36 REMARK 500 8 ALA A 65 101.16 -48.39 REMARK 500 9 LYS A 38 -137.97 -154.67 REMARK 500 9 HIS A 40 176.46 -45.80 REMARK 500 9 ALA A 65 97.55 -68.61 REMARK 500 10 LYS A 38 -142.97 -161.28 REMARK 500 10 HIS A 40 175.84 -45.57 REMARK 500 10 ALA A 65 95.87 -59.23 REMARK 500 10 GLN A 74 19.51 56.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17937 RELATED DB: BMRB DBREF 2M02 A 19 107 UNP P28023 DCTN1_RAT 19 107 SEQRES 1 A 89 SER THR GLU ALA SER ALA ARG PRO LEU ARG VAL GLY SER SEQRES 2 A 89 ARG VAL GLU VAL ILE GLY LYS GLY HIS ARG GLY THR VAL SEQRES 3 A 89 ALA TYR VAL GLY ALA THR LEU PHE ALA THR GLY LYS TRP SEQRES 4 A 89 VAL GLY VAL ILE LEU ASP GLU ALA LYS GLY LYS ASN ASP SEQRES 5 A 89 GLY THR VAL GLN GLY ARG LYS TYR PHE THR CYS ASP GLU SEQRES 6 A 89 GLY HIS GLY ILE PHE VAL ARG GLN SER GLN ILE GLN VAL SEQRES 7 A 89 PHE GLU ASP GLY ALA ASP THR THR SER PRO GLU SHEET 1 A 4 ARG A 32 VAL A 33 0 SHEET 2 A 4 GLY A 42 GLY A 48 -1 O GLY A 42 N VAL A 33 SHEET 3 A 4 TRP A 57 LEU A 62 -1 O GLY A 59 N TYR A 46 SHEET 4 A 4 ILE A 87 VAL A 89 -1 O ILE A 87 N VAL A 60 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1