data_2M05 # _entry.id 2M05 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2M05 pdb_00002m05 10.2210/pdb2m05/pdb RCSB RCSB103041 ? ? BMRB 18794 ? ? WWPDB D_1000103041 ? ? # _pdbx_database_related.db_id 18794 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M05 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-10-20 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hinds, M.G.' 1 'Leong, S.' 2 # _citation.id primary _citation.title ;Quantification of copper binding to amyloid precursor protein domain 2 and its Caenorhabditis elegans ortholog. Implications for biological function. ; _citation.journal_abbrev Metallomics _citation.journal_volume 6 _citation.page_first 105 _citation.page_last 116 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1756-5901 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24276282 _citation.pdbx_database_id_DOI 10.1039/c3mt00258f # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leong, S.L.' 1 ? primary 'Young, T.R.' 2 ? primary 'Barnham, K.J.' 3 ? primary 'Wedd, A.G.' 4 ? primary 'Hinds, M.G.' 5 ? primary 'Xiao, Z.' 6 ? primary 'Cappai, R.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Beta-amyloid-like protein' _entity.formula_weight 7428.443 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'module 2 of E1 domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code EACQFSHVNSRDQCNDYQHWKDEAGKQCKTKKSKGNKDMIVRSFAVLEPCALDMFTGVEFVCCPN _entity_poly.pdbx_seq_one_letter_code_can EACQFSHVNSRDQCNDYQHWKDEAGKQCKTKKSKGNKDMIVRSFAVLEPCALDMFTGVEFVCCPN _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 ALA n 1 3 CYS n 1 4 GLN n 1 5 PHE n 1 6 SER n 1 7 HIS n 1 8 VAL n 1 9 ASN n 1 10 SER n 1 11 ARG n 1 12 ASP n 1 13 GLN n 1 14 CYS n 1 15 ASN n 1 16 ASP n 1 17 TYR n 1 18 GLN n 1 19 HIS n 1 20 TRP n 1 21 LYS n 1 22 ASP n 1 23 GLU n 1 24 ALA n 1 25 GLY n 1 26 LYS n 1 27 GLN n 1 28 CYS n 1 29 LYS n 1 30 THR n 1 31 LYS n 1 32 LYS n 1 33 SER n 1 34 LYS n 1 35 GLY n 1 36 ASN n 1 37 LYS n 1 38 ASP n 1 39 MET n 1 40 ILE n 1 41 VAL n 1 42 ARG n 1 43 SER n 1 44 PHE n 1 45 ALA n 1 46 VAL n 1 47 LEU n 1 48 GLU n 1 49 PRO n 1 50 CYS n 1 51 ALA n 1 52 LEU n 1 53 ASP n 1 54 MET n 1 55 PHE n 1 56 THR n 1 57 GLY n 1 58 VAL n 1 59 GLU n 1 60 PHE n 1 61 VAL n 1 62 CYS n 1 63 CYS n 1 64 PRO n 1 65 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name nematode _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'apl-1, C42D8.8' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caenorhabditis elegans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6239 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'Pichia pastoris' _entity_src_gen.pdbx_host_org_scientific_name 'Komagataella pastoris' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 4922 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_CAEEL _struct_ref.pdbx_db_accession Q10651 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code CQFSHVNSRDQCNDYQHWKDEAGKQCKTKKSKGNKDMIVRSFAVLEPCALDMFTGVEFVCCPN _struct_ref.pdbx_align_begin 135 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2M05 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 65 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q10651 _struct_ref_seq.db_align_beg 135 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 197 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 135 _struct_ref_seq.pdbx_auth_seq_align_end 197 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2M05 GLU A 1 ? UNP Q10651 ? ? 'expression tag' 133 1 1 2M05 ALA A 2 ? UNP Q10651 ? ? 'expression tag' 134 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D HNCA' 1 3 1 '3D HNCO' 1 4 1 '3D HN(CO)CA' 1 5 1 '3D HNCACB' 1 6 1 '3D HBHA(CO)NH' 1 7 1 '3D HCCH-TOCSY' 1 8 1 '3D C(CO)NH' 1 9 1 '3D 1H-15N NOESY' 1 10 1 '3D 1H-13C NOESY aliphatic' 1 11 1 '2D 1H-1H NOESY' 1 12 1 '3D CBCA(CO)NH' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.pH 6.9 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '0.5 mM APL-1, 0.5 mM [U-100% 15N] APL-1, 0.5 mM [U-100% 13C; U-100% 15N] APL-1, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 600 Bruker AVANCE 2 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2M05 _pdbx_nmr_refine.method 'DGSA-distance geometry simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 256 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M05 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 5 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.2 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M05 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker AG' collection TopSpin ? 1 'Bartels et al.' 'data analysis' XEASY ? 2 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 3 'Schwieters, Kuszewski, Tjandra and Clore' refinement XPLOR-NIH ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2M05 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2M05 _struct.title 'Structure of module 2 from the E1 domain of C. elegans APL-1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M05 _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'Apl-1, Amyloid Precursor Protein, UNKNOWN FUNCTION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 16 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 31 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 148 _struct_conf.end_auth_comp_id LYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 163 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 63 SG ? ? A CYS 135 A CYS 195 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf2 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 50 SG ? ? A CYS 146 A CYS 182 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 62 SG ? ? A CYS 160 A CYS 194 1_555 ? ? ? ? ? ? ? 2.020 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 4 ? ASN A 9 ? GLN A 136 ASN A 141 A 2 GLY A 57 ? CYS A 63 ? GLY A 189 CYS A 195 A 3 ILE A 40 ? VAL A 46 ? ILE A 172 VAL A 178 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 4 ? N GLN A 136 O CYS A 62 ? O CYS A 194 A 2 3 O CYS A 63 ? O CYS A 195 N ILE A 40 ? N ILE A 172 # _atom_sites.entry_id 2M05 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 133 133 GLU GLU A . n A 1 2 ALA 2 134 134 ALA ALA A . n A 1 3 CYS 3 135 135 CYS CYS A . n A 1 4 GLN 4 136 136 GLN GLN A . n A 1 5 PHE 5 137 137 PHE PHE A . n A 1 6 SER 6 138 138 SER SER A . n A 1 7 HIS 7 139 139 HIS HIS A . n A 1 8 VAL 8 140 140 VAL VAL A . n A 1 9 ASN 9 141 141 ASN ASN A . n A 1 10 SER 10 142 142 SER SER A . n A 1 11 ARG 11 143 143 ARG ARG A . n A 1 12 ASP 12 144 144 ASP ASP A . n A 1 13 GLN 13 145 145 GLN GLN A . n A 1 14 CYS 14 146 146 CYS CYS A . n A 1 15 ASN 15 147 147 ASN ASN A . n A 1 16 ASP 16 148 148 ASP ASP A . n A 1 17 TYR 17 149 149 TYR TYR A . n A 1 18 GLN 18 150 150 GLN GLN A . n A 1 19 HIS 19 151 151 HIS HIS A . n A 1 20 TRP 20 152 152 TRP TRP A . n A 1 21 LYS 21 153 153 LYS LYS A . n A 1 22 ASP 22 154 154 ASP ASP A . n A 1 23 GLU 23 155 155 GLU GLU A . n A 1 24 ALA 24 156 156 ALA ALA A . n A 1 25 GLY 25 157 157 GLY GLY A . n A 1 26 LYS 26 158 158 LYS LYS A . n A 1 27 GLN 27 159 159 GLN GLN A . n A 1 28 CYS 28 160 160 CYS CYS A . n A 1 29 LYS 29 161 161 LYS LYS A . n A 1 30 THR 30 162 162 THR THR A . n A 1 31 LYS 31 163 163 LYS LYS A . n A 1 32 LYS 32 164 164 LYS LYS A . n A 1 33 SER 33 165 165 SER SER A . n A 1 34 LYS 34 166 166 LYS LYS A . n A 1 35 GLY 35 167 167 GLY GLY A . n A 1 36 ASN 36 168 168 ASN ASN A . n A 1 37 LYS 37 169 169 LYS LYS A . n A 1 38 ASP 38 170 170 ASP ASP A . n A 1 39 MET 39 171 171 MET MET A . n A 1 40 ILE 40 172 172 ILE ILE A . n A 1 41 VAL 41 173 173 VAL VAL A . n A 1 42 ARG 42 174 174 ARG ARG A . n A 1 43 SER 43 175 175 SER SER A . n A 1 44 PHE 44 176 176 PHE PHE A . n A 1 45 ALA 45 177 177 ALA ALA A . n A 1 46 VAL 46 178 178 VAL VAL A . n A 1 47 LEU 47 179 179 LEU LEU A . n A 1 48 GLU 48 180 180 GLU GLU A . n A 1 49 PRO 49 181 181 PRO PRO A . n A 1 50 CYS 50 182 182 CYS CYS A . n A 1 51 ALA 51 183 183 ALA ALA A . n A 1 52 LEU 52 184 184 LEU LEU A . n A 1 53 ASP 53 185 185 ASP ASP A . n A 1 54 MET 54 186 186 MET MET A . n A 1 55 PHE 55 187 187 PHE PHE A . n A 1 56 THR 56 188 188 THR THR A . n A 1 57 GLY 57 189 189 GLY GLY A . n A 1 58 VAL 58 190 190 VAL VAL A . n A 1 59 GLU 59 191 191 GLU GLU A . n A 1 60 PHE 60 192 192 PHE PHE A . n A 1 61 VAL 61 193 193 VAL VAL A . n A 1 62 CYS 62 194 194 CYS CYS A . n A 1 63 CYS 63 195 195 CYS CYS A . n A 1 64 PRO 64 196 196 PRO PRO A . n A 1 65 ASN 65 197 197 ASN ASN A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-23 2 'Structure model' 1 1 2013-12-25 3 'Structure model' 1 2 2014-01-01 4 'Structure model' 1 3 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 4 'Structure model' '_pdbx_nmr_software.name' 5 4 'Structure model' '_pdbx_nmr_spectrometer.model' 6 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.024 _pdbx_nmr_ensemble_rms.distance_rms_dev_error 0.001 _pdbx_nmr_ensemble_rms.entry_id 2M05 _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id APL-1-1 0.5 ? mM ? 1 APL-1-2 0.5 ? mM '[U-100% 15N]' 1 APL-1-3 0.5 ? mM '[U-100% 13C; U-100% 15N]' 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2M05 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1056 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 402 _pdbx_nmr_constraints.NOE_long_range_total_count 322 _pdbx_nmr_constraints.NOE_medium_range_total_count 102 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 230 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 51 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 51 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 HG A SER 165 ? ? H A LYS 166 ? ? 1.34 2 4 H3 A GLU 133 ? ? H A ALA 134 ? ? 1.33 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 145 ? ? -59.07 76.89 2 1 LEU A 179 ? ? -112.56 -98.95 3 1 ALA A 183 ? ? -34.97 161.29 4 1 LEU A 184 ? ? -15.39 -67.37 5 1 ASP A 185 ? ? -119.49 68.34 6 2 GLN A 145 ? ? -59.26 76.91 7 2 LEU A 179 ? ? -112.65 -99.00 8 2 ALA A 183 ? ? -34.91 161.46 9 2 LEU A 184 ? ? -15.44 -67.31 10 2 ASP A 185 ? ? -119.71 68.38 11 3 GLN A 145 ? ? -59.12 76.89 12 3 LEU A 179 ? ? -112.17 -99.11 13 3 ALA A 183 ? ? -34.96 161.40 14 3 LEU A 184 ? ? -15.33 -67.46 15 3 ASP A 185 ? ? -119.54 68.46 16 4 GLN A 145 ? ? -59.10 76.71 17 4 LEU A 179 ? ? -112.11 -99.35 18 4 ALA A 183 ? ? -34.94 161.58 19 4 LEU A 184 ? ? -15.38 -67.31 20 5 GLN A 145 ? ? -59.08 77.04 21 5 LEU A 179 ? ? -112.61 -99.07 22 5 ALA A 183 ? ? -34.88 161.24 23 5 LEU A 184 ? ? -15.37 -67.28 24 5 ASP A 185 ? ? -119.55 68.40 25 6 GLN A 145 ? ? -59.17 77.10 26 6 SER A 165 ? ? -78.55 -167.94 27 6 LEU A 179 ? ? -112.09 -99.08 28 6 ALA A 183 ? ? -34.93 161.30 29 6 LEU A 184 ? ? -15.44 -67.23 30 6 ASP A 185 ? ? -119.51 68.23 31 7 GLN A 145 ? ? -59.19 76.86 32 7 LEU A 179 ? ? -112.51 -99.05 33 7 ALA A 183 ? ? -35.02 161.77 34 7 LEU A 184 ? ? -15.40 -67.37 35 7 ASP A 185 ? ? -119.88 68.07 36 8 GLN A 145 ? ? -58.95 77.25 37 8 LEU A 179 ? ? -112.37 -98.91 38 8 ALA A 183 ? ? -35.01 161.06 39 8 LEU A 184 ? ? -15.31 -67.34 40 8 ASP A 185 ? ? -119.27 68.26 41 9 GLN A 145 ? ? -58.94 77.02 42 9 LEU A 179 ? ? -112.20 -98.89 43 9 ALA A 183 ? ? -35.06 161.27 44 9 LEU A 184 ? ? -15.37 -67.35 45 9 ASP A 185 ? ? -119.42 68.31 46 10 GLN A 145 ? ? -59.10 76.89 47 10 LEU A 179 ? ? -112.00 -99.24 48 10 ALA A 183 ? ? -35.00 161.60 49 10 LEU A 184 ? ? -15.31 -67.32 50 10 ASP A 185 ? ? -119.99 68.77 51 11 GLN A 145 ? ? -59.14 77.09 52 11 LYS A 169 ? ? -107.13 -168.66 53 11 LEU A 179 ? ? -112.45 -98.84 54 11 ALA A 183 ? ? -34.94 161.29 55 11 LEU A 184 ? ? -15.26 -67.43 56 11 ASP A 185 ? ? -119.61 68.42 57 12 GLN A 145 ? ? -59.33 76.79 58 12 LYS A 169 ? ? -105.58 -168.40 59 12 LEU A 179 ? ? -112.31 -99.19 60 12 ALA A 183 ? ? -34.99 162.07 61 12 LEU A 184 ? ? -15.46 -67.32 62 13 ALA A 134 ? ? 53.00 177.24 63 13 GLN A 145 ? ? -59.08 77.01 64 13 LEU A 179 ? ? -112.72 -98.87 65 13 ALA A 183 ? ? -34.97 161.43 66 13 LEU A 184 ? ? -15.28 -67.41 67 13 ASP A 185 ? ? -119.57 68.43 68 14 GLN A 145 ? ? -59.07 76.87 69 14 LYS A 169 ? ? -108.88 -168.56 70 14 LEU A 179 ? ? -112.47 -98.89 71 14 ALA A 183 ? ? -35.02 161.97 72 14 LEU A 184 ? ? -15.26 -67.49 73 15 ALA A 134 ? ? 53.03 177.12 74 15 GLN A 145 ? ? -59.28 76.86 75 15 LEU A 179 ? ? -112.43 -99.02 76 15 ALA A 183 ? ? -34.87 161.14 77 15 LEU A 184 ? ? -15.41 -67.27 78 15 ASP A 185 ? ? -119.38 68.14 79 16 GLN A 145 ? ? -59.10 77.08 80 16 SER A 165 ? ? -78.94 -169.89 81 16 LEU A 179 ? ? -112.64 -99.00 82 16 ALA A 183 ? ? -35.09 161.65 83 16 LEU A 184 ? ? -15.35 -67.42 84 16 ASP A 185 ? ? -119.83 68.18 85 17 GLN A 145 ? ? -59.28 76.66 86 17 LYS A 169 ? ? -106.95 -168.56 87 17 LEU A 179 ? ? -112.27 -99.17 88 17 ALA A 183 ? ? -35.04 162.12 89 17 LEU A 184 ? ? -15.35 -67.41 90 18 GLN A 145 ? ? -59.25 76.96 91 18 SER A 165 ? ? -66.33 -160.90 92 18 LEU A 179 ? ? -112.49 -99.08 93 18 ALA A 183 ? ? -35.12 161.95 94 18 LEU A 184 ? ? -15.34 -67.43 95 18 ASP A 185 ? ? -119.98 68.18 96 19 GLN A 145 ? ? -58.83 77.41 97 19 LEU A 179 ? ? -112.26 -98.54 98 19 ALA A 183 ? ? -34.92 161.08 99 19 LEU A 184 ? ? -15.46 -67.30 100 19 ASP A 185 ? ? -119.03 68.08 101 20 GLN A 145 ? ? -59.17 76.84 102 20 SER A 165 ? ? -73.26 -165.36 103 20 LEU A 179 ? ? -112.28 -99.06 104 20 ALA A 183 ? ? -35.02 161.47 105 20 LEU A 184 ? ? -15.47 -67.30 106 20 ASP A 185 ? ? -119.61 68.41 #