HEADER UNKNOWN FUNCTION 20-OCT-12 2M05 TITLE STRUCTURE OF MODULE 2 FROM THE E1 DOMAIN OF C. ELEGANS APL-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-AMYLOID-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MODULE 2 OF E1 DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_COMMON: NEMATODE; SOURCE 4 ORGANISM_TAXID: 6239; SOURCE 5 GENE: APL-1, C42D8.8; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: PICHIA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS APL-1, AMYLOID PRECURSOR PROTEIN, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.G.HINDS,S.LEONG REVDAT 4 14-JUN-23 2M05 1 REMARK SEQADV REVDAT 3 01-JAN-14 2M05 1 JRNL REVDAT 2 25-DEC-13 2M05 1 JRNL REVDAT 1 23-OCT-13 2M05 0 JRNL AUTH S.L.LEONG,T.R.YOUNG,K.J.BARNHAM,A.G.WEDD,M.G.HINDS,Z.XIAO, JRNL AUTH 2 R.CAPPAI JRNL TITL QUANTIFICATION OF COPPER BINDING TO AMYLOID PRECURSOR JRNL TITL 2 PROTEIN DOMAIN 2 AND ITS CAENORHABDITIS ELEGANS ORTHOLOG. JRNL TITL 3 IMPLICATIONS FOR BIOLOGICAL FUNCTION. JRNL REF METALLOMICS V. 6 105 2013 JRNL REFN ISSN 1756-5901 JRNL PMID 24276282 JRNL DOI 10.1039/C3MT00258F REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, XPLOR-NIH REMARK 3 AUTHORS : BRUKER AG (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (XPLOR-NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M05 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000103041. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM APL-1, 0.5 MM [U-100% REMARK 210 15N] APL-1, 0.5 MM [U-100% 13C; REMARK 210 U-100% 15N] APL-1, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 C(CO)NH; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 2D 1H-1H REMARK 210 NOESY; 3D CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, CYANA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 256 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 145 76.89 -59.07 REMARK 500 1 LEU A 179 -98.95 -112.56 REMARK 500 1 ALA A 183 161.29 -34.97 REMARK 500 1 LEU A 184 -67.37 -15.39 REMARK 500 1 ASP A 185 68.34 -119.49 REMARK 500 2 GLN A 145 76.91 -59.26 REMARK 500 2 LEU A 179 -99.00 -112.65 REMARK 500 2 ALA A 183 161.46 -34.91 REMARK 500 2 LEU A 184 -67.31 -15.44 REMARK 500 2 ASP A 185 68.38 -119.71 REMARK 500 3 GLN A 145 76.89 -59.12 REMARK 500 3 LEU A 179 -99.11 -112.17 REMARK 500 3 ALA A 183 161.40 -34.96 REMARK 500 3 LEU A 184 -67.46 -15.33 REMARK 500 3 ASP A 185 68.46 -119.54 REMARK 500 4 GLN A 145 76.71 -59.10 REMARK 500 4 LEU A 179 -99.35 -112.11 REMARK 500 4 ALA A 183 161.58 -34.94 REMARK 500 4 LEU A 184 -67.31 -15.38 REMARK 500 5 GLN A 145 77.04 -59.08 REMARK 500 5 LEU A 179 -99.07 -112.61 REMARK 500 5 ALA A 183 161.24 -34.88 REMARK 500 5 LEU A 184 -67.28 -15.37 REMARK 500 5 ASP A 185 68.40 -119.55 REMARK 500 6 GLN A 145 77.10 -59.17 REMARK 500 6 SER A 165 -167.94 -78.55 REMARK 500 6 LEU A 179 -99.08 -112.09 REMARK 500 6 ALA A 183 161.30 -34.93 REMARK 500 6 LEU A 184 -67.23 -15.44 REMARK 500 6 ASP A 185 68.23 -119.51 REMARK 500 7 GLN A 145 76.86 -59.19 REMARK 500 7 LEU A 179 -99.05 -112.51 REMARK 500 7 ALA A 183 161.77 -35.02 REMARK 500 7 LEU A 184 -67.37 -15.40 REMARK 500 7 ASP A 185 68.07 -119.88 REMARK 500 8 GLN A 145 77.25 -58.95 REMARK 500 8 LEU A 179 -98.91 -112.37 REMARK 500 8 ALA A 183 161.06 -35.01 REMARK 500 8 LEU A 184 -67.34 -15.31 REMARK 500 8 ASP A 185 68.26 -119.27 REMARK 500 9 GLN A 145 77.02 -58.94 REMARK 500 9 LEU A 179 -98.89 -112.20 REMARK 500 9 ALA A 183 161.27 -35.06 REMARK 500 9 LEU A 184 -67.35 -15.37 REMARK 500 9 ASP A 185 68.31 -119.42 REMARK 500 10 GLN A 145 76.89 -59.10 REMARK 500 10 LEU A 179 -99.24 -112.00 REMARK 500 10 ALA A 183 161.60 -35.00 REMARK 500 10 LEU A 184 -67.32 -15.31 REMARK 500 10 ASP A 185 68.77 -119.99 REMARK 500 REMARK 500 THIS ENTRY HAS 106 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18794 RELATED DB: BMRB DBREF 2M05 A 135 197 UNP Q10651 A4_CAEEL 135 197 SEQADV 2M05 GLU A 133 UNP Q10651 EXPRESSION TAG SEQADV 2M05 ALA A 134 UNP Q10651 EXPRESSION TAG SEQRES 1 A 65 GLU ALA CYS GLN PHE SER HIS VAL ASN SER ARG ASP GLN SEQRES 2 A 65 CYS ASN ASP TYR GLN HIS TRP LYS ASP GLU ALA GLY LYS SEQRES 3 A 65 GLN CYS LYS THR LYS LYS SER LYS GLY ASN LYS ASP MET SEQRES 4 A 65 ILE VAL ARG SER PHE ALA VAL LEU GLU PRO CYS ALA LEU SEQRES 5 A 65 ASP MET PHE THR GLY VAL GLU PHE VAL CYS CYS PRO ASN HELIX 1 1 ASP A 148 LYS A 163 1 16 SHEET 1 A 3 GLN A 136 ASN A 141 0 SHEET 2 A 3 GLY A 189 CYS A 195 -1 O CYS A 194 N GLN A 136 SHEET 3 A 3 ILE A 172 VAL A 178 -1 N ILE A 172 O CYS A 195 SSBOND 1 CYS A 135 CYS A 195 1555 1555 2.02 SSBOND 2 CYS A 146 CYS A 182 1555 1555 2.03 SSBOND 3 CYS A 160 CYS A 194 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1