HEADER ISOMERASE 22-OCT-12 2M08 TITLE THE SOLUTION STRUCTURE OF NMPIN, THE PARVULINE OF NITROSOPUMILUS TITLE 2 MARITIMUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PPIC-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NITROSOPUMILUS MARITIMUS; SOURCE 3 ORGANISM_TAXID: 436308; SOURCE 4 STRAIN: SCM1; SOURCE 5 GENE: NMAR0942, NMAR_0942; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET41 (A-C) KEYWDS PARVULIN, ARCHAEAL, MEMBRANE, THAUMARCHAEOTA, SDPAR, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.LEDERER,P.BAYER REVDAT 3 14-JUN-23 2M08 1 REMARK SEQADV REVDAT 2 06-JUL-16 2M08 1 JRNL REVDAT 1 23-APR-14 2M08 0 JRNL AUTH L.HOPPSTOCK,F.TRUSCH,C.LEDERER,P.VAN WEST,M.KOENNEKE,P.BAYER JRNL TITL NMPIN FROM THE MARINE THAUMARCHAEOTE NITROSOPUMILUS JRNL TITL 2 MARITIMUS IS AN ACTIVE MEMBRANE ASSOCIATED PROLYL ISOMERASE. JRNL REF BMC BIOL. V. 14 53 2016 JRNL REFN ESSN 1741-7007 JRNL PMID 27349962 JRNL DOI 10.1186/S12915-016-0274-1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.0, CYANA 3.0 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M08 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000103044. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 301.5 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 50 MM [U-99% 13C; U-99% REMARK 210 15N] POTASSIUM PHOSPHATE, 2 UM REMARK 210 [U-99% 13C; U-99% 15N] DSS, 90% REMARK 210 H2O/10% D2O; 1 MM [U-99% 13C; U- REMARK 210 99% 15N] PROTEIN, 50 MM [U-99% REMARK 210 13C; U-99% 15N] POTASSIUM REMARK 210 PHOSPHATE, 2 UM [U-99% 13C; U-99% REMARK 210 15N] DSS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H COSY; REMARK 210 2D 1H-1H NOESY; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : ULTRASHIELD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 3.0, CCPN 2.1, CYANA 3.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 9 -167.47 -121.69 REMARK 500 1 HIS A 10 142.97 -172.56 REMARK 500 1 GLU A 38 -64.56 -142.55 REMARK 500 1 SER A 40 103.30 -51.68 REMARK 500 1 SER A 45 -41.09 -157.53 REMARK 500 1 PRO A 63 46.56 -69.71 REMARK 500 1 PHE A 64 -60.35 -165.98 REMARK 500 1 ALA A 67 31.44 -94.80 REMARK 500 1 VAL A 73 95.18 -63.05 REMARK 500 1 PRO A 79 85.16 -69.69 REMARK 500 2 PRO A 2 -178.96 -69.73 REMARK 500 2 SER A 9 -167.75 -121.25 REMARK 500 2 GLU A 24 -55.53 -121.78 REMARK 500 2 GLU A 38 -62.28 -139.67 REMARK 500 2 SER A 40 103.33 -52.01 REMARK 500 2 SER A 45 -44.93 -160.10 REMARK 500 2 PRO A 63 46.56 -69.79 REMARK 500 2 PHE A 64 -60.31 -167.03 REMARK 500 2 VAL A 73 98.30 -62.62 REMARK 500 2 PRO A 79 83.14 -69.73 REMARK 500 2 PHE A 92 -35.00 -131.49 REMARK 500 3 SER A 9 -168.48 -119.97 REMARK 500 3 HIS A 10 147.16 -171.15 REMARK 500 3 GLU A 38 -58.03 -139.39 REMARK 500 3 SER A 40 103.33 -51.61 REMARK 500 3 ASP A 42 109.03 -59.50 REMARK 500 3 SER A 45 -42.31 -160.68 REMARK 500 3 PRO A 63 46.31 -69.84 REMARK 500 3 PHE A 64 -62.17 -165.72 REMARK 500 3 ALA A 67 32.41 -94.97 REMARK 500 3 VAL A 73 102.38 -58.32 REMARK 500 3 PRO A 79 83.70 -69.76 REMARK 500 4 ASN A 4 -62.25 -95.17 REMARK 500 4 SER A 9 -168.96 -120.52 REMARK 500 4 HIS A 10 147.06 -170.29 REMARK 500 4 GLU A 30 -168.08 -76.76 REMARK 500 4 GLU A 38 -60.81 -136.50 REMARK 500 4 SER A 40 104.25 -51.75 REMARK 500 4 SER A 45 -41.24 -160.02 REMARK 500 4 PRO A 63 45.80 -69.77 REMARK 500 4 PHE A 64 -62.46 -165.83 REMARK 500 4 ALA A 67 32.51 -93.58 REMARK 500 4 VAL A 73 90.26 -65.67 REMARK 500 4 PRO A 79 83.22 -69.74 REMARK 500 5 SER A 9 -167.81 -118.39 REMARK 500 5 HIS A 10 144.72 -171.73 REMARK 500 5 GLU A 30 -167.94 -104.65 REMARK 500 5 GLU A 38 -58.85 -135.58 REMARK 500 5 SER A 40 103.63 -51.37 REMARK 500 5 SER A 45 -40.99 -158.31 REMARK 500 REMARK 500 THIS ENTRY HAS 205 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18801 RELATED DB: BMRB DBREF 2M08 A 3 93 UNP A9A2C7 A9A2C7_NITMS 2 92 SEQADV 2M08 GLY A 1 UNP A9A2C7 EXPRESSION TAG SEQADV 2M08 PRO A 2 UNP A9A2C7 EXPRESSION TAG SEQRES 1 A 93 GLY PRO SER ASN LYS ILE LYS CYS SER HIS ILE LEU VAL SEQRES 2 A 93 SER LYS GLN SER GLU ALA LEU ALA ILE MET GLU LYS LEU SEQRES 3 A 93 LYS SER GLY GLU LYS PHE GLY LYS LEU ALA LYS GLU LEU SEQRES 4 A 93 SER ILE ASP SER GLY SER ALA LYS LYS ASN GLY ASN LEU SEQRES 5 A 93 GLY TYR PHE THR LYS GLY MET MET VAL LYS PRO PHE GLU SEQRES 6 A 93 ASP ALA ALA PHE LYS LEU GLN VAL GLY GLU VAL SER GLU SEQRES 7 A 93 PRO ILE LYS SER GLU PHE GLY TYR HIS ILE ILE LYS ARG SEQRES 8 A 93 PHE GLY HELIX 1 1 LYS A 15 LEU A 20 1 6 HELIX 2 2 LEU A 20 LEU A 26 1 7 HELIX 3 3 LYS A 27 GLY A 29 5 3 HELIX 4 4 LYS A 31 LYS A 37 1 7 HELIX 5 5 VAL A 61 ASP A 66 1 6 HELIX 6 6 ALA A 67 PHE A 69 5 3 SHEET 1 A 2 ILE A 6 SER A 9 0 SHEET 2 A 2 ASN A 51 PHE A 55 -1 O GLY A 53 N CYS A 8 SHEET 1 B 3 LEU A 12 VAL A 13 0 SHEET 2 B 3 TYR A 86 HIS A 87 -1 O TYR A 86 N VAL A 13 SHEET 3 B 3 ILE A 80 LYS A 81 -1 N ILE A 80 O HIS A 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1