HEADER HYDROLASE 23-OCT-12 2M0A TITLE SOLUTION STRUCTURE OF MHV NSP3A COMPND MOL_ID: 1; COMPND 2 MOLECULE: NON-STRUCTURAL PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NSP3, PL1-PRO/PL2-PRO, PL1/PL2, PAPAIN-LIKE PROTEINASES 1/2, COMPND 5 P210; COMPND 6 EC: 3.4.19.12, 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURINE HEPATITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 11142; SOURCE 4 STRAIN: A59; SOURCE 5 GENE: 1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET3A KEYWDS HYDROLASE EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR S.C.KEANE,D.P.GIEDROC REVDAT 3 14-JUN-23 2M0A 1 REMARK REVDAT 2 03-APR-13 2M0A 1 JRNL REVDAT 1 23-JAN-13 2M0A 0 JRNL AUTH S.C.KEANE,D.P.GIEDROC JRNL TITL SOLUTION STRUCTURE OF MOUSE HEPATITIS VIRUS (MHV) NSP3A AND JRNL TITL 2 DETERMINANTS OF THE INTERACTION WITH MHV NUCLEOCAPSID (N) JRNL TITL 3 PROTEIN. JRNL REF J.VIROL. V. 87 3502 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23302895 JRNL DOI 10.1128/JVI.03112-12 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, X-PLOR NIH REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DGSA-DISTANCE GEOMETRY SIMULATED REMARK 3 ANNEALING REMARK 4 REMARK 4 2M0A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000103046. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM POTASSIUM PHOSPHATE, 100 REMARK 210 MM POTASSIUM CHLORIDE, 5 MM TCEP, REMARK 210 90% H2O/10% D2O; 50 MM REMARK 210 POTASSIUM PHOSPHATE, 100 MM REMARK 210 POTASSIUM CHLORIDE, 5 MM TCEP, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; 3D HNCO; 3D C(CO)NH; REMARK 210 3D H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNHA; IPAP-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, NMRPIPE, NMRDRAW, REMARK 210 SPARKY, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 10 H ARG A 13 1.27 REMARK 500 O GLY A 75 H VAL A 78 1.41 REMARK 500 O HIS A 71 H GLY A 75 1.52 REMARK 500 O ILE A 74 H LYS A 77 1.57 REMARK 500 N PRO A 10 CB LYS A 14 1.90 REMARK 500 N PRO A 10 CG LYS A 14 1.94 REMARK 500 CA PRO A 10 CB LYS A 14 1.96 REMARK 500 CA PRO A 10 CG LYS A 14 2.01 REMARK 500 CD PRO A 10 CG LYS A 14 2.02 REMARK 500 CG PRO A 10 CB LYS A 14 2.02 REMARK 500 CB PRO A 10 CG LYS A 14 2.04 REMARK 500 N PRO A 10 O ARG A 13 2.05 REMARK 500 O LYS A 9 C ARG A 13 2.07 REMARK 500 CD PRO A 10 CB LYS A 14 2.10 REMARK 500 CB PRO A 10 CB LYS A 14 2.11 REMARK 500 C LYS A 9 O ARG A 13 2.13 REMARK 500 O LYS A 9 O ARG A 13 2.14 REMARK 500 N PRO A 10 CA LYS A 14 2.14 REMARK 500 CG PRO A 10 CG LYS A 14 2.15 REMARK 500 O PRO A 10 N ARG A 13 2.16 REMARK 500 O PRO A 10 O ARG A 13 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 PRO A 10 N PRO A 10 CA 0.600 REMARK 500 1 PRO A 10 CA PRO A 10 CB 0.320 REMARK 500 1 PRO A 10 CB PRO A 10 CG 0.310 REMARK 500 1 PRO A 10 CG PRO A 10 CD 0.366 REMARK 500 1 PRO A 10 CD PRO A 10 N 0.312 REMARK 500 1 LYS A 14 N LYS A 14 CA 0.175 REMARK 500 1 LYS A 14 CB LYS A 14 CG 0.963 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 PRO A 10 C - N - CA ANGL. DEV. = 15.0 DEGREES REMARK 500 1 PRO A 10 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 1 LYS A 14 N - CA - CB ANGL. DEV. = 12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 -77.80 89.11 REMARK 500 1 LYS A 3 -138.00 128.31 REMARK 500 1 VAL A 4 27.07 174.89 REMARK 500 1 GLU A 5 22.11 -152.75 REMARK 500 1 PHE A 6 172.29 -49.20 REMARK 500 1 ASP A 8 170.35 68.54 REMARK 500 1 LYS A 9 142.30 -27.22 REMARK 500 1 PRO A 10 178.30 -55.08 REMARK 500 1 LYS A 11 -108.63 42.98 REMARK 500 1 ARG A 13 114.56 -173.78 REMARK 500 1 LYS A 14 -175.77 -179.74 REMARK 500 1 SER A 17 17.74 -61.58 REMARK 500 1 ASP A 45 170.76 -57.73 REMARK 500 1 LYS A 46 31.67 -87.89 REMARK 500 1 LEU A 50 -35.92 -30.31 REMARK 500 1 LEU A 65 72.14 -106.23 REMARK 500 1 THR A 76 -35.49 -25.00 REMARK 500 1 TYR A 89 -110.47 -108.62 REMARK 500 2 ASN A 7 52.94 -173.18 REMARK 500 2 ASP A 8 -167.14 43.97 REMARK 500 2 LYS A 9 157.32 -46.03 REMARK 500 2 PRO A 16 -164.11 -68.44 REMARK 500 2 CYS A 39 79.22 -118.58 REMARK 500 2 THR A 49 -71.36 -90.76 REMARK 500 2 LEU A 50 -24.57 172.17 REMARK 500 2 CYS A 68 -42.00 -133.25 REMARK 500 2 THR A 76 -19.99 -46.58 REMARK 500 2 ASP A 88 -172.11 -68.92 REMARK 500 2 TYR A 89 175.06 173.45 REMARK 500 2 GLU A 95 26.00 -76.16 REMARK 500 2 GLU A 99 86.40 -55.60 REMARK 500 2 ARG A 104 74.23 -118.63 REMARK 500 3 GLU A 5 179.31 -54.42 REMARK 500 3 PHE A 6 60.60 -158.60 REMARK 500 3 ASN A 7 -91.03 32.83 REMARK 500 3 PRO A 10 76.70 -69.93 REMARK 500 3 VAL A 12 -73.12 -71.66 REMARK 500 3 ARG A 13 171.64 -56.62 REMARK 500 3 LEU A 27 -79.72 -139.78 REMARK 500 3 ASP A 28 -62.02 -156.94 REMARK 500 3 ALA A 29 -68.20 -178.11 REMARK 500 3 CYS A 39 63.52 -162.42 REMARK 500 3 GLU A 41 139.43 -174.45 REMARK 500 3 LYS A 46 101.11 -47.56 REMARK 500 3 ASP A 47 29.91 163.38 REMARK 500 3 ASP A 88 98.93 63.51 REMARK 500 3 TYR A 89 -100.07 -55.29 REMARK 500 4 LYS A 2 -76.40 -65.26 REMARK 500 4 LYS A 3 -7.82 65.87 REMARK 500 4 PHE A 6 81.07 -156.42 REMARK 500 REMARK 500 THIS ENTRY HAS 313 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18587 RELATED DB: BMRB REMARK 900 ENTRY CONTAINING THE BACKBONE AND SIDE CHAIN RESONANCE ASSIGNMENTS REMARK 900 OF MHV NSP3A DBREF 2M0A A 1 114 UNP P0C6V0 R1A_CVMA5 833 946 SEQRES 1 A 114 GLY LYS LYS VAL GLU PHE ASN ASP LYS PRO LYS VAL ARG SEQRES 2 A 114 LYS ILE PRO SER THR ARG LYS ILE LYS ILE THR PHE ALA SEQRES 3 A 114 LEU ASP ALA THR PHE ASP SER VAL LEU SER LYS ALA CYS SEQRES 4 A 114 SER GLU PHE GLU VAL ASP LYS ASP VAL THR LEU ASP GLU SEQRES 5 A 114 LEU LEU ASP VAL VAL LEU ASP ALA VAL GLU SER THR LEU SEQRES 6 A 114 SER PRO CYS LYS GLU HIS ASP VAL ILE GLY THR LYS VAL SEQRES 7 A 114 CYS ALA LEU LEU ASP ARG LEU ALA GLY ASP TYR VAL TYR SEQRES 8 A 114 LEU PHE ASP GLU GLY GLY ASP GLU VAL ILE ALA PRO ARG SEQRES 9 A 114 MET TYR CYS SER PHE SER ALA PRO ASP ASP HELIX 1 1 ALA A 29 CYS A 39 1 11 HELIX 2 2 THR A 49 LEU A 65 1 17 HELIX 3 3 HIS A 71 THR A 76 1 6 HELIX 4 4 THR A 76 GLY A 87 1 12 SHEET 1 A 2 THR A 18 ILE A 21 0 SHEET 2 A 2 PHE A 42 ASP A 45 -1 O VAL A 44 N ARG A 19 SHEET 1 B 2 TYR A 91 ASP A 94 0 SHEET 2 B 2 MET A 105 SER A 108 -1 O TYR A 106 N PHE A 93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1