HEADER MEMBRANE PROTEIN 24-OCT-12 2M0B TITLE HOMODIMERIC TRANSMEMBRANE DOMAIN OF THE HUMAN RECEPTOR TYROSINE KINASE TITLE 2 ERBB1 (EGFR, HER1) IN MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRANSMEMBRANE REGION RESIDUES 634-677; COMPND 5 SYNONYM: PROTO-ONCOGENE C-ERBB-1, RECEPTOR TYROSINE-PROTEIN KINASE COMPND 6 ERBB-1; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGFR, ERBB, ERBB1, HER1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEMEX-1/(TRX-TMERBB1) KEYWDS TRANSMEMBRANE DOMAIN, ERBB1, RECEPTOR, DIMERIZATION, TYROSINE KINASE, KEYWDS 2 MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.M.LESOVOY,E.V.BOCHAROV,Y.E.PUSTOVALOVA,O.V.BOCHAROVA,A.S.ARSENIEV REVDAT 2 26-JUN-19 2M0B 1 JRNL REVDAT 1 30-OCT-13 2M0B 0 JRNL AUTH E.V.BOCHAROV,D.M.LESOVOY,K.V.PAVLOV,Y.E.PUSTOVALOVA, JRNL AUTH 2 O.V.BOCHAROVA,A.S.ARSENIEV JRNL TITL ALTERNATIVE PACKING OF EGFR TRANSMEMBRANE DOMAIN SUGGESTS JRNL TITL 2 THAT PROTEIN-LIPID INTERACTIONS UNDERLIE SIGNAL CONDUCTION JRNL TITL 3 ACROSS MEMBRANE. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1858 1254 2016 JRNL REFN ISSN 0006-3002 JRNL PMID 26903218 JRNL DOI 10.1016/J.BBAMEM.2016.02.023 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, CYANA 3.0 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M0B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000103047. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.75 MM [U-99% 13C; U-99% 15N] REMARK 210 ERBB1TM, 0.75 MM ERBB1TM, 90 MM REMARK 210 [U-99% 2H] DPC, 0.3 MM SODIUM REMARK 210 AZIDE, 6 MM TCEP, 10 MM CITRIC REMARK 210 ACID, 20 MM NA2HPO4, 95% H2O/5% REMARK 210 D2O; 0.75 MM [U-99% 13C; U-99% REMARK 210 15N] ERBB1TM, 0.75 MM ERBB1TM, REMARK 210 90 MM [U-99% 2H] DPC, 0.3 MM REMARK 210 SODIUM AZIDE, 6 MM TCEP, 10 MM REMARK 210 CITRIC ACID, 20 MM NA2HPO4, 99.9% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-15N TROSY; REMARK 210 2D 1H-13C CONSTANT TIME HSQC ALIPHATIC; 2D 1H-13C CONSTANT TIME REMARK 210 HSQC AROMATIC; 3D HNCO; 3D HNCA; 3D HN(CO)CA; 3D HN(CA)CO; 3D REMARK 210 HNHA; 3D HNHB; 3D HCCH-TOCSY; 3D 1H-15N(TROSY) NOESY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC; 3D 1H-13C(CONSTANT TIME) NOESY ALIPHATIC; 15N, REMARK 210 13C-F1-FILTERED/F3-EDITED-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.8.4, MATHEMATICA REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 636 68.85 -159.78 REMARK 500 1 PRO A 641 98.56 -69.71 REMARK 500 1 ILE A 643 74.75 -119.08 REMARK 500 1 PRO A 644 -170.94 -69.72 REMARK 500 1 CYS B 636 73.40 -150.27 REMARK 500 1 ILE B 643 74.82 -112.61 REMARK 500 1 PRO B 644 -171.69 -69.81 REMARK 500 2 PRO A 637 76.84 -69.75 REMARK 500 2 PRO A 644 -166.09 -69.78 REMARK 500 2 CYS B 636 73.17 54.23 REMARK 500 2 PRO B 637 85.61 -69.79 REMARK 500 2 PRO B 644 -164.89 -69.74 REMARK 500 2 ILE B 673 98.29 -58.34 REMARK 500 3 CYS A 636 69.76 -154.11 REMARK 500 3 PRO A 644 -166.20 -69.78 REMARK 500 3 CYS B 636 70.52 -152.58 REMARK 500 3 PRO B 637 84.71 -69.79 REMARK 500 3 THR B 638 42.58 37.81 REMARK 500 3 PRO B 641 -172.36 -69.82 REMARK 500 3 ILE B 643 71.91 -114.03 REMARK 500 3 PRO B 644 -165.77 -69.77 REMARK 500 3 HIS B 672 106.02 -59.41 REMARK 500 4 PRO A 644 -165.73 -69.80 REMARK 500 4 VAL A 674 63.52 62.41 REMARK 500 4 CYS B 636 73.35 -119.50 REMARK 500 4 PRO B 644 -164.79 -69.76 REMARK 500 5 CYS A 636 73.95 -171.60 REMARK 500 5 PRO A 637 87.35 -69.73 REMARK 500 5 PRO A 644 -168.91 -69.74 REMARK 500 5 PRO B 644 -166.20 -69.72 REMARK 500 5 VAL B 674 97.73 -60.37 REMARK 500 6 PRO A 644 -168.21 -69.81 REMARK 500 6 HIS A 672 98.89 -58.07 REMARK 500 6 LYS B 642 -165.17 -164.62 REMARK 500 6 PRO B 644 -166.91 -69.71 REMARK 500 7 PRO A 641 -170.68 -69.81 REMARK 500 7 LYS A 642 146.66 -172.23 REMARK 500 7 ILE A 643 74.15 54.05 REMARK 500 7 PRO A 644 -169.02 -69.74 REMARK 500 7 ILE A 673 -69.91 -98.23 REMARK 500 7 PRO B 641 98.82 -69.77 REMARK 500 7 PRO B 644 -167.93 -69.86 REMARK 500 7 HIS B 672 -67.15 -97.87 REMARK 500 8 PRO A 641 88.54 -69.77 REMARK 500 8 ILE A 643 70.31 50.26 REMARK 500 8 PRO A 644 -165.45 -69.75 REMARK 500 8 CYS B 636 70.25 59.68 REMARK 500 8 PRO B 644 -165.98 -69.72 REMARK 500 9 CYS A 636 73.21 -175.06 REMARK 500 9 LYS A 642 142.39 -171.13 REMARK 500 REMARK 500 THIS ENTRY HAS 128 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18804 RELATED DB: BMRB DBREF 2M0B A 634 677 UNP P00533 EGFR_HUMAN 634 677 DBREF 2M0B B 634 677 UNP P00533 EGFR_HUMAN 634 677 SEQRES 1 A 44 GLU GLY CYS PRO THR ASN GLY PRO LYS ILE PRO SER ILE SEQRES 2 A 44 ALA THR GLY MET VAL GLY ALA LEU LEU LEU LEU LEU VAL SEQRES 3 A 44 VAL ALA LEU GLY ILE GLY LEU PHE MET ARG ARG ARG HIS SEQRES 4 A 44 ILE VAL ARG LYS ARG SEQRES 1 B 44 GLU GLY CYS PRO THR ASN GLY PRO LYS ILE PRO SER ILE SEQRES 2 B 44 ALA THR GLY MET VAL GLY ALA LEU LEU LEU LEU LEU VAL SEQRES 3 B 44 VAL ALA LEU GLY ILE GLY LEU PHE MET ARG ARG ARG HIS SEQRES 4 B 44 ILE VAL ARG LYS ARG HELIX 1 1 ILE A 646 ARG A 670 1 25 HELIX 2 2 ILE B 646 ARG B 670 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1