HEADER UNKNOWN FUNCTION 30-OCT-12 2M0N TITLE SOLUTION STRUCTURE OF A DUF3349 ANNOTATED PROTEIN FROM MYCOBACTERIUM TITLE 2 ABSCESSUS, MAB_3403C. SEATTLE STRUCTURAL GENOMICS CENTER FOR TITLE 3 INFECTIOUS DISEASE TARGET MYABA.17112.A.A2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ABSCESSUS; SOURCE 3 ORGANISM_TAXID: 561007; SOURCE 4 STRAIN: ATCC 19977 / DSM 44196; SOURCE 5 GENE: MAB_3403C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS TUBERCULOSIS, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 2 FOR INFECTIOUS DISEASE, SSGCID, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.W.BUCHKO,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 2 (SSGCID) REVDAT 3 14-JUN-23 2M0N 1 REMARK REVDAT 2 26-FEB-20 2M0N 1 JRNL REMARK SEQADV REVDAT 1 21-NOV-12 2M0N 0 JRNL AUTH G.W.BUCHKO,J.ABENDROTH,J.I.ROBINSON,I.Q.PHAN,P.J.MYLER, JRNL AUTH 2 T.E.EDWARDS JRNL TITL STRUCTURAL DIVERSITY IN THE MYCOBACTERIA DUF3349 JRNL TITL 2 SUPERFAMILY. JRNL REF PROTEIN SCI. V. 29 670 2020 JRNL REFN ESSN 1469-896X JRNL PMID 31658388 JRNL DOI 10.1002/PRO.3758 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY USING CYANA (AUTOMATED NOESY ASSIGNMENTS). A TOTAL REMARK 3 OF 20 STRUCTURES OUT OF 100 WITH LOWEST TARGET FUNCTION FROM THE REMARK 3 FINAL CYANA CALCULATION WERE TAKEN AND REFINED BY RESTRAINED REMARK 3 MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS) REMARK 3 AFTER ADDING 2% TO THE UPPER BOUNDARY LIMIT OF THE DISTANCE REMARK 3 RESTRAINTS AND THE VDW LIMIT TO THE LOWER RESTRAINT. PARAM19 WAS REMARK 3 USED FOR THE WATER REFINEMENT CALCULATIONS. REMARK 4 REMARK 4 2M0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000103059. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 100 MM SODIUM CHLORIDE, REMARK 210 20 MM TRIS, 1 MM DTT, 93% H2O/7% REMARK 210 D2O; 1.0 MM [U-99% 13C; U-99% REMARK 210 15N] PROTEIN, 100 MM SODIUM REMARK 210 CHLORIDE, 20 MM TRIS, 1 MM DTT, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D C(CO)NH; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HNCO; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 2D 1H- REMARK 210 13C HSQC AROMATIC; 3D 1H-15N REMARK 210 NOESY; 2D 1H-13C HSQC ALIPHATIC; REMARK 210 2D HBCBCGCDCDHD; 2D HBCBCGCDCEHE; REMARK 210 DEUTERIUM EXCHANGE; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, SPARKY 3.115, FELIX REMARK 210 2007, PSVS 1.3, TALOS + REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -47.52 76.80 REMARK 500 1 HIS A 8 95.16 -63.83 REMARK 500 1 GLN A 17 -61.03 -168.32 REMARK 500 1 PRO A 22 99.14 -68.03 REMARK 500 1 PRO A 27 75.67 -63.81 REMARK 500 1 LEU A 41 99.27 -68.97 REMARK 500 1 VAL A 78 38.50 -92.74 REMARK 500 1 ASP A 81 -8.16 64.55 REMARK 500 1 TRP A 100 -173.22 -62.98 REMARK 500 1 PRO A 101 -142.51 6.58 REMARK 500 2 SER A 21 83.44 60.43 REMARK 500 2 ALA A 35 37.04 -89.04 REMARK 500 2 VAL A 65 112.27 -165.47 REMARK 500 2 VAL A 78 33.83 -93.54 REMARK 500 2 ASP A 81 -54.08 71.77 REMARK 500 2 TRP A 100 171.10 -48.67 REMARK 500 2 PRO A 101 25.07 6.80 REMARK 500 2 VAL A 105 89.25 -66.93 REMARK 500 2 ALA A 109 34.26 -97.59 REMARK 500 3 MET A 9 84.86 -150.40 REMARK 500 3 SER A 21 -61.14 -142.55 REMARK 500 3 PRO A 22 94.67 -69.60 REMARK 500 3 PRO A 27 39.91 -76.44 REMARK 500 3 ARG A 30 128.09 177.92 REMARK 500 3 VAL A 78 34.95 -90.83 REMARK 500 3 ASP A 81 -69.49 67.89 REMARK 500 3 TRP A 100 -172.12 -55.86 REMARK 500 3 PRO A 101 83.89 10.82 REMARK 500 3 VAL A 105 41.68 -82.00 REMARK 500 3 ASP A 106 96.29 -63.25 REMARK 500 4 LEU A 12 96.93 -67.23 REMARK 500 4 PRO A 27 84.42 -66.20 REMARK 500 4 VAL A 78 31.27 -87.13 REMARK 500 4 ASP A 81 -64.00 68.50 REMARK 500 4 PRO A 101 -164.95 -124.89 REMARK 500 4 ALA A 103 172.97 158.73 REMARK 500 5 PRO A 19 26.27 -79.90 REMARK 500 5 SER A 21 90.27 45.24 REMARK 500 5 PRO A 22 84.91 -67.13 REMARK 500 5 PRO A 27 107.15 -58.37 REMARK 500 5 VAL A 78 39.62 -90.10 REMARK 500 5 ASP A 81 -66.92 69.18 REMARK 500 5 PRO A 101 -132.15 -132.06 REMARK 500 6 ALA A 2 -1.65 65.35 REMARK 500 6 HIS A 7 92.61 -62.11 REMARK 500 6 ALA A 14 7.82 -150.07 REMARK 500 6 SER A 21 94.54 -176.96 REMARK 500 6 PRO A 27 83.41 -64.70 REMARK 500 6 ASP A 29 28.88 -77.20 REMARK 500 6 PRO A 32 22.06 -78.45 REMARK 500 REMARK 500 THIS ENTRY HAS 210 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 100 PRO A 101 1 -146.53 REMARK 500 TRP A 100 PRO A 101 2 -147.93 REMARK 500 TRP A 100 PRO A 101 3 -142.55 REMARK 500 TRP A 100 PRO A 101 6 -147.62 REMARK 500 TRP A 100 PRO A 101 8 -141.53 REMARK 500 TRP A 100 PRO A 101 9 -148.27 REMARK 500 TRP A 100 PRO A 101 10 -145.82 REMARK 500 TRP A 100 PRO A 101 12 146.73 REMARK 500 TRP A 100 PRO A 101 13 148.28 REMARK 500 TRP A 100 PRO A 101 18 -144.91 REMARK 500 TRP A 100 PRO A 101 19 -147.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18812 RELATED DB: BMRB REMARK 900 RELATED ID: SSGCID-MYABA.17112.A.A2 RELATED DB: TARGETTRACK DBREF 2M0N A 22 112 UNP B1ME10 B1ME10_MYCA9 19 109 SEQADV 2M0N MET A 1 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N ALA A 2 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N HIS A 3 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N HIS A 4 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N HIS A 5 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N HIS A 6 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N HIS A 7 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N HIS A 8 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N MET A 9 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N GLY A 10 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N THR A 11 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N LEU A 12 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N GLU A 13 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N ALA A 14 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N GLN A 15 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N THR A 16 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N GLN A 17 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N GLY A 18 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N PRO A 19 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N GLY A 20 UNP B1ME10 EXPRESSION TAG SEQADV 2M0N SER A 21 UNP B1ME10 EXPRESSION TAG SEQRES 1 A 112 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 112 ALA GLN THR GLN GLY PRO GLY SER PRO GLU GLY VAL PRO SEQRES 3 A 112 PRO THR ASP ARG PHE PRO LEU LEU ALA LEU LEU ARG ARG SEQRES 4 A 112 THR LEU THR GLU GLU GLN VAL GLN GLU VAL VAL ALA LYS SEQRES 5 A 112 LEU THR ASP PRO GLU SER SER ALA GLN ILE ASP GLY VAL SEQRES 6 A 112 VAL SER LYS ASP GLU ILE GLU LYS PHE ILE ALA ASP VAL SEQRES 7 A 112 THR LYS ASP GLU PRO THR ALA GLN ASP ILE SER ARG VAL SEQRES 8 A 112 ALA SER ARG LEU ALA ALA GLY GLY TRP PRO LEU ALA GLY SEQRES 9 A 112 VAL ASP SER THR ALA LEU ASN ALA HELIX 1 1 PHE A 31 LEU A 36 5 6 HELIX 2 2 THR A 42 THR A 54 1 13 HELIX 3 3 SER A 58 ASP A 63 1 6 HELIX 4 4 ASP A 69 VAL A 78 1 10 HELIX 5 5 THR A 84 GLY A 98 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1