data_2M0T # _entry.id 2M0T # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2M0T pdb_00002m0t 10.2210/pdb2m0t/pdb RCSB RCSB103065 ? ? BMRB 18824 ? ? WWPDB D_1000103065 ? ? # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 18824 BMRB unspecified . 2M0U PDB unspecified . 2M0V PDB unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M0T _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-11-06 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bhattacharya, S.' 1 'Ju, J.H.' 2 'Cowburn, D.' 3 'Bu, Z.' 4 # _citation.id primary _citation.title 'Ligand-Induced Dynamic Changes in Extended PDZ Domains from NHERF1.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 425 _citation.page_first 2509 _citation.page_last 2528 _citation.year 2013 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23583913 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2013.04.001 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bhattacharya, S.' 1 ? primary 'Ju, J.H.' 2 ? primary 'Orlova, N.' 3 ? primary 'Khajeh, J.A.' 4 ? primary 'Cowburn, D.' 5 ? primary 'Bu, Z.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Na(+)/H(+) exchange regulatory cofactor NHE-RF1' _entity.formula_weight 12822.609 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PDZ1 domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;NHERF-1, Ezrin-radixin-moesin-binding phosphoprotein 50, EBP50, Regulatory cofactor of Na(+)/H(+) exchanger, Sodium-hydrogen exchanger regulatory factor 1, Solute carrier family 9 isoform A3 regulatory factor 1 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GIDPFTMLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL NAVRLLVVDPETDEQLQKLGVQVREELLRAQEAPGQA ; _entity_poly.pdbx_seq_one_letter_code_can ;GIDPFTMLPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL NAVRLLVVDPETDEQLQKLGVQVREELLRAQEAPGQA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ILE n 1 3 ASP n 1 4 PRO n 1 5 PHE n 1 6 THR n 1 7 MET n 1 8 LEU n 1 9 PRO n 1 10 ARG n 1 11 LEU n 1 12 CYS n 1 13 CYS n 1 14 LEU n 1 15 GLU n 1 16 LYS n 1 17 GLY n 1 18 PRO n 1 19 ASN n 1 20 GLY n 1 21 TYR n 1 22 GLY n 1 23 PHE n 1 24 HIS n 1 25 LEU n 1 26 HIS n 1 27 GLY n 1 28 GLU n 1 29 LYS n 1 30 GLY n 1 31 LYS n 1 32 LEU n 1 33 GLY n 1 34 GLN n 1 35 TYR n 1 36 ILE n 1 37 ARG n 1 38 LEU n 1 39 VAL n 1 40 GLU n 1 41 PRO n 1 42 GLY n 1 43 SER n 1 44 PRO n 1 45 ALA n 1 46 GLU n 1 47 LYS n 1 48 ALA n 1 49 GLY n 1 50 LEU n 1 51 LEU n 1 52 ALA n 1 53 GLY n 1 54 ASP n 1 55 ARG n 1 56 LEU n 1 57 VAL n 1 58 GLU n 1 59 VAL n 1 60 ASN n 1 61 GLY n 1 62 GLU n 1 63 ASN n 1 64 VAL n 1 65 GLU n 1 66 LYS n 1 67 GLU n 1 68 THR n 1 69 HIS n 1 70 GLN n 1 71 GLN n 1 72 VAL n 1 73 VAL n 1 74 SER n 1 75 ARG n 1 76 ILE n 1 77 ARG n 1 78 ALA n 1 79 ALA n 1 80 LEU n 1 81 ASN n 1 82 ALA n 1 83 VAL n 1 84 ARG n 1 85 LEU n 1 86 LEU n 1 87 VAL n 1 88 VAL n 1 89 ASP n 1 90 PRO n 1 91 GLU n 1 92 THR n 1 93 ASP n 1 94 GLU n 1 95 GLN n 1 96 LEU n 1 97 GLN n 1 98 LYS n 1 99 LEU n 1 100 GLY n 1 101 VAL n 1 102 GLN n 1 103 VAL n 1 104 ARG n 1 105 GLU n 1 106 GLU n 1 107 LEU n 1 108 LEU n 1 109 ARG n 1 110 ALA n 1 111 GLN n 1 112 GLU n 1 113 ALA n 1 114 PRO n 1 115 GLY n 1 116 GLN n 1 117 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SLC9A3R1, NHERF, NHERF1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta 2 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET151/D-TOPO _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NHRF1_HUMAN _struct_ref.pdbx_db_accession O14745 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LPRLCCLEKGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLV VDPETDEQLQKLGVQVREELLRAQEAPGQA ; _struct_ref.pdbx_align_begin 11 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2M0T _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 117 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O14745 _struct_ref_seq.db_align_beg 11 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 120 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 11 _struct_ref_seq.pdbx_auth_seq_align_end 120 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2M0T GLY A 1 ? UNP O14745 ? ? 'expression tag' 4 1 1 2M0T ILE A 2 ? UNP O14745 ? ? 'expression tag' 5 2 1 2M0T ASP A 3 ? UNP O14745 ? ? 'expression tag' 6 3 1 2M0T PRO A 4 ? UNP O14745 ? ? 'expression tag' 7 4 1 2M0T PHE A 5 ? UNP O14745 ? ? 'expression tag' 8 5 1 2M0T THR A 6 ? UNP O14745 ? ? 'expression tag' 9 6 1 2M0T MET A 7 ? UNP O14745 ? ? 'expression tag' 10 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D HNCACB' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCO' 1 5 1 '3D HNCA' 1 6 1 '2D 1H-13C HSQC aliphatic' 1 7 1 '2D 1H-13C HSQC aromatic' 1 8 1 '3D 1H-13C NOESY aliphatic' 1 9 1 '3D 1H-13C NOESY aromatic' 1 10 1 '3D 1H-15N NOESY' 1 11 1 '3D H(CCO)NH' 1 12 1 '3D HBHA(CO)NH' 1 13 1 '3D HCCH-COSY' 1 14 1 '3D HCCH-TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 150 _pdbx_nmr_exptl_sample_conditions.pH 7.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 288 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents '400 uM [U-99% 13C; U-99% 15N] PDZ1, 20 mM TRIS, 150 mM sodium chloride, 0.5 mM DTT, 0.5 mM EDTA, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Bruker AVANCE 1 'Bruker Avance' 800 Bruker AVANCE 2 'Bruker Avance' 700 Bruker AVANCE 3 'Bruker Avance' 600 Bruker AVANCE 4 'Bruker Avance' 500 Bruker AVANCE 5 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2M0T _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M0T _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M0T _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin 2.1 1 'Bruker Biospin' processing TopSpin 2.1 2 'Keller and Wuthrich' 'data analysis' CARA 1.5 3 'Keller and Wuthrich' 'peak picking' CARA 1.5 4 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.1 5 ;Linge, O'Donoghue and Nilges ; refinement ARIA 2.2 6 'Cornilescu, Delaglio and Bax' 'data analysis' TALOS 1.01 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2M0T _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2M0T _struct.title 'Structural characterization of the extended PDZ1 domain from NHERF1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M0T _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'PDZ domain, PROTEIN BINDING' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 43 ? GLY A 49 ? SER A 46 GLY A 52 1 ? 7 HELX_P HELX_P2 2 THR A 68 ? ARG A 77 ? THR A 71 ARG A 80 1 ? 10 HELX_P HELX_P3 3 ASP A 89 ? LYS A 98 ? ASP A 92 LYS A 101 1 ? 10 HELX_P HELX_P4 4 GLU A 105 ? ALA A 110 ? GLU A 108 ALA A 113 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 10 ? GLU A 15 ? ARG A 13 GLU A 18 A 2 ALA A 82 ? VAL A 88 ? ALA A 85 VAL A 91 A 3 ARG A 55 ? VAL A 59 ? ARG A 58 VAL A 62 A 4 GLN A 34 ? VAL A 39 ? GLN A 37 VAL A 42 A 5 PHE A 23 ? GLY A 27 ? PHE A 26 GLY A 30 B 1 ARG A 10 ? GLU A 15 ? ARG A 13 GLU A 18 B 2 ALA A 82 ? VAL A 88 ? ALA A 85 VAL A 91 B 3 ARG A 55 ? VAL A 59 ? ARG A 58 VAL A 62 B 4 GLU A 62 ? ASN A 63 ? GLU A 65 ASN A 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 12 ? N CYS A 15 O LEU A 85 ? O LEU A 88 A 2 3 O LEU A 86 ? O LEU A 89 N VAL A 57 ? N VAL A 60 A 3 4 O LEU A 56 ? O LEU A 59 N GLN A 34 ? N GLN A 37 A 4 5 O ARG A 37 ? O ARG A 40 N HIS A 24 ? N HIS A 27 B 1 2 N CYS A 12 ? N CYS A 15 O LEU A 85 ? O LEU A 88 B 2 3 O LEU A 86 ? O LEU A 89 N VAL A 57 ? N VAL A 60 B 3 4 N VAL A 59 ? N VAL A 62 O GLU A 62 ? O GLU A 65 # _atom_sites.entry_id 2M0T _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 4 4 GLY GLY A . n A 1 2 ILE 2 5 5 ILE ILE A . n A 1 3 ASP 3 6 6 ASP ASP A . n A 1 4 PRO 4 7 7 PRO PRO A . n A 1 5 PHE 5 8 8 PHE PHE A . n A 1 6 THR 6 9 9 THR THR A . n A 1 7 MET 7 10 10 MET MET A . n A 1 8 LEU 8 11 11 LEU LEU A . n A 1 9 PRO 9 12 12 PRO PRO A . n A 1 10 ARG 10 13 13 ARG ARG A . n A 1 11 LEU 11 14 14 LEU LEU A . n A 1 12 CYS 12 15 15 CYS CYS A . n A 1 13 CYS 13 16 16 CYS CYS A . n A 1 14 LEU 14 17 17 LEU LEU A . n A 1 15 GLU 15 18 18 GLU GLU A . n A 1 16 LYS 16 19 19 LYS LYS A . n A 1 17 GLY 17 20 20 GLY GLY A . n A 1 18 PRO 18 21 21 PRO PRO A . n A 1 19 ASN 19 22 22 ASN ASN A . n A 1 20 GLY 20 23 23 GLY GLY A . n A 1 21 TYR 21 24 24 TYR TYR A . n A 1 22 GLY 22 25 25 GLY GLY A . n A 1 23 PHE 23 26 26 PHE PHE A . n A 1 24 HIS 24 27 27 HIS HIS A . n A 1 25 LEU 25 28 28 LEU LEU A . n A 1 26 HIS 26 29 29 HIS HIS A . n A 1 27 GLY 27 30 30 GLY GLY A . n A 1 28 GLU 28 31 31 GLU GLU A . n A 1 29 LYS 29 32 32 LYS LYS A . n A 1 30 GLY 30 33 33 GLY GLY A . n A 1 31 LYS 31 34 34 LYS LYS A . n A 1 32 LEU 32 35 35 LEU LEU A . n A 1 33 GLY 33 36 36 GLY GLY A . n A 1 34 GLN 34 37 37 GLN GLN A . n A 1 35 TYR 35 38 38 TYR TYR A . n A 1 36 ILE 36 39 39 ILE ILE A . n A 1 37 ARG 37 40 40 ARG ARG A . n A 1 38 LEU 38 41 41 LEU LEU A . n A 1 39 VAL 39 42 42 VAL VAL A . n A 1 40 GLU 40 43 43 GLU GLU A . n A 1 41 PRO 41 44 44 PRO PRO A . n A 1 42 GLY 42 45 45 GLY GLY A . n A 1 43 SER 43 46 46 SER SER A . n A 1 44 PRO 44 47 47 PRO PRO A . n A 1 45 ALA 45 48 48 ALA ALA A . n A 1 46 GLU 46 49 49 GLU GLU A . n A 1 47 LYS 47 50 50 LYS LYS A . n A 1 48 ALA 48 51 51 ALA ALA A . n A 1 49 GLY 49 52 52 GLY GLY A . n A 1 50 LEU 50 53 53 LEU LEU A . n A 1 51 LEU 51 54 54 LEU LEU A . n A 1 52 ALA 52 55 55 ALA ALA A . n A 1 53 GLY 53 56 56 GLY GLY A . n A 1 54 ASP 54 57 57 ASP ASP A . n A 1 55 ARG 55 58 58 ARG ARG A . n A 1 56 LEU 56 59 59 LEU LEU A . n A 1 57 VAL 57 60 60 VAL VAL A . n A 1 58 GLU 58 61 61 GLU GLU A . n A 1 59 VAL 59 62 62 VAL VAL A . n A 1 60 ASN 60 63 63 ASN ASN A . n A 1 61 GLY 61 64 64 GLY GLY A . n A 1 62 GLU 62 65 65 GLU GLU A . n A 1 63 ASN 63 66 66 ASN ASN A . n A 1 64 VAL 64 67 67 VAL VAL A . n A 1 65 GLU 65 68 68 GLU GLU A . n A 1 66 LYS 66 69 69 LYS LYS A . n A 1 67 GLU 67 70 70 GLU GLU A . n A 1 68 THR 68 71 71 THR THR A . n A 1 69 HIS 69 72 72 HIS HIS A . n A 1 70 GLN 70 73 73 GLN GLN A . n A 1 71 GLN 71 74 74 GLN GLN A . n A 1 72 VAL 72 75 75 VAL VAL A . n A 1 73 VAL 73 76 76 VAL VAL A . n A 1 74 SER 74 77 77 SER SER A . n A 1 75 ARG 75 78 78 ARG ARG A . n A 1 76 ILE 76 79 79 ILE ILE A . n A 1 77 ARG 77 80 80 ARG ARG A . n A 1 78 ALA 78 81 81 ALA ALA A . n A 1 79 ALA 79 82 82 ALA ALA A . n A 1 80 LEU 80 83 83 LEU LEU A . n A 1 81 ASN 81 84 84 ASN ASN A . n A 1 82 ALA 82 85 85 ALA ALA A . n A 1 83 VAL 83 86 86 VAL VAL A . n A 1 84 ARG 84 87 87 ARG ARG A . n A 1 85 LEU 85 88 88 LEU LEU A . n A 1 86 LEU 86 89 89 LEU LEU A . n A 1 87 VAL 87 90 90 VAL VAL A . n A 1 88 VAL 88 91 91 VAL VAL A . n A 1 89 ASP 89 92 92 ASP ASP A . n A 1 90 PRO 90 93 93 PRO PRO A . n A 1 91 GLU 91 94 94 GLU GLU A . n A 1 92 THR 92 95 95 THR THR A . n A 1 93 ASP 93 96 96 ASP ASP A . n A 1 94 GLU 94 97 97 GLU GLU A . n A 1 95 GLN 95 98 98 GLN GLN A . n A 1 96 LEU 96 99 99 LEU LEU A . n A 1 97 GLN 97 100 100 GLN GLN A . n A 1 98 LYS 98 101 101 LYS LYS A . n A 1 99 LEU 99 102 102 LEU LEU A . n A 1 100 GLY 100 103 103 GLY GLY A . n A 1 101 VAL 101 104 104 VAL VAL A . n A 1 102 GLN 102 105 105 GLN GLN A . n A 1 103 VAL 103 106 106 VAL VAL A . n A 1 104 ARG 104 107 107 ARG ARG A . n A 1 105 GLU 105 108 108 GLU GLU A . n A 1 106 GLU 106 109 109 GLU GLU A . n A 1 107 LEU 107 110 110 LEU LEU A . n A 1 108 LEU 108 111 111 LEU LEU A . n A 1 109 ARG 109 112 112 ARG ARG A . n A 1 110 ALA 110 113 113 ALA ALA A . n A 1 111 GLN 111 114 114 GLN GLN A . n A 1 112 GLU 112 115 115 GLU GLU A . n A 1 113 ALA 113 116 116 ALA ALA A . n A 1 114 PRO 114 117 117 PRO PRO A . n A 1 115 GLY 115 118 118 GLY GLY A . n A 1 116 GLN 116 119 119 GLN GLN A . n A 1 117 ALA 117 120 120 ALA ALA A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-04-24 2 'Structure model' 1 1 2013-05-01 3 'Structure model' 1 2 2013-06-26 4 'Structure model' 1 3 2013-07-17 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' database_2 2 5 'Structure model' pdbx_database_status 3 5 'Structure model' pdbx_nmr_software 4 5 'Structure model' pdbx_nmr_spectrometer 5 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 5 'Structure model' '_pdbx_nmr_software.name' 5 5 'Structure model' '_pdbx_nmr_spectrometer.model' 6 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id PDZ1-1 400 ? uM '[U-99% 13C; U-99% 15N]' 1 TRIS-2 20 ? mM ? 1 'sodium chloride-3' 150 ? mM ? 1 DTT-4 0.5 ? mM ? 1 EDTA-5 0.5 ? mM ? 1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 HG3 A PRO 12 ? ? HB A VAL 106 ? ? 1.15 2 4 H A ILE 39 ? ? OD1 A ASP 57 ? ? 1.56 3 4 H A HIS 27 ? ? O A LEU 41 ? ? 1.57 4 7 H A GLY 45 ? ? OE1 A GLU 49 ? ? 1.60 5 8 HG3 A PRO 12 ? ? HB A VAL 106 ? ? 1.06 6 10 H A ASN 63 ? ? O A ARG 87 ? ? 1.59 7 11 HB3 A PRO 12 ? ? HB A VAL 91 ? ? 1.34 8 11 H A GLY 45 ? ? OE1 A GLU 49 ? ? 1.58 9 11 H A SER 46 ? ? OE1 A GLU 49 ? ? 1.58 10 15 OE1 A GLU 61 ? ? HE A ARG 107 ? ? 1.58 11 16 OE1 A GLU 18 ? ? HZ2 A LYS 50 ? ? 1.58 12 16 OE2 A GLU 108 ? ? HH21 A ARG 112 ? ? 1.59 13 17 HG3 A PRO 12 ? ? HB A VAL 106 ? ? 1.19 14 18 HG3 A PRO 12 ? ? HB A VAL 106 ? ? 1.32 15 19 HG3 A PRO 12 ? ? HB A VAL 106 ? ? 1.32 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 9 ? ? -170.38 126.37 2 1 ALA A 55 ? ? -66.06 95.71 3 1 ASN A 63 ? ? 68.61 -60.90 4 1 GLU A 108 ? ? -165.86 -40.13 5 1 ALA A 113 ? ? -74.27 46.08 6 1 ALA A 116 ? ? 62.10 94.56 7 1 PRO A 117 ? ? -51.67 101.78 8 2 THR A 9 ? ? -160.37 -43.51 9 2 LEU A 83 ? ? -84.63 -70.74 10 2 GLU A 108 ? ? -171.14 -47.29 11 2 ARG A 112 ? ? -83.78 -81.22 12 2 ALA A 113 ? ? -174.96 109.88 13 3 THR A 9 ? ? -172.52 123.58 14 3 GLU A 108 ? ? -167.26 -24.10 15 4 THR A 9 ? ? -173.13 128.42 16 4 MET A 10 ? ? 73.54 -51.51 17 4 LEU A 11 ? ? 55.80 133.53 18 4 ASP A 57 ? ? -105.76 -169.97 19 4 LEU A 83 ? ? -63.17 -83.85 20 4 VAL A 104 ? ? 68.74 125.54 21 4 GLU A 108 ? ? -165.62 -26.75 22 4 ALA A 116 ? ? -162.25 100.22 23 4 GLN A 119 ? ? 74.26 -42.14 24 5 ASN A 63 ? ? 73.59 -43.65 25 5 LEU A 83 ? ? -66.55 -73.39 26 5 GLU A 108 ? ? -175.18 -34.98 27 6 LEU A 35 ? ? -144.00 29.05 28 6 GLU A 108 ? ? -178.19 -13.86 29 6 PRO A 117 ? ? -57.56 99.13 30 6 GLN A 119 ? ? 71.11 -11.38 31 7 ASN A 63 ? ? 70.92 -61.20 32 7 GLU A 70 ? ? -110.75 -165.26 33 7 LEU A 83 ? ? -76.95 -74.49 34 7 GLU A 108 ? ? -169.77 -11.72 35 8 THR A 9 ? ? -171.03 134.72 36 8 PRO A 44 ? ? -34.67 94.34 37 8 ALA A 55 ? ? -55.19 99.71 38 8 GLU A 108 ? ? -172.66 -21.06 39 8 GLU A 115 ? ? -80.93 -81.63 40 8 GLN A 119 ? ? -86.30 37.86 41 9 ALA A 55 ? ? -68.05 92.87 42 9 VAL A 104 ? ? 67.00 146.85 43 9 GLU A 108 ? ? 179.99 -13.16 44 9 GLN A 119 ? ? 69.39 -72.44 45 10 THR A 9 ? ? -170.63 123.43 46 10 LYS A 34 ? ? 37.83 -154.35 47 10 ASN A 63 ? ? 68.39 -58.25 48 10 GLN A 105 ? ? -104.32 69.88 49 10 GLU A 108 ? ? -174.59 -27.18 50 10 ALA A 116 ? ? 59.25 79.78 51 10 PRO A 117 ? ? -60.25 95.73 52 11 THR A 9 ? ? -172.00 133.74 53 11 MET A 10 ? ? 75.20 -60.58 54 11 LEU A 11 ? ? 51.91 132.91 55 11 GLU A 31 ? ? 64.16 -173.70 56 11 ASN A 63 ? ? 71.99 -24.00 57 11 GLU A 70 ? ? -116.90 -164.24 58 11 GLU A 108 ? ? -166.79 -10.16 59 11 GLN A 119 ? ? -149.13 47.77 60 12 THR A 9 ? ? -148.56 -45.52 61 12 SER A 46 ? ? -119.64 -164.16 62 12 ALA A 55 ? ? -67.44 94.46 63 12 LYS A 69 ? ? -141.94 34.98 64 12 GLU A 70 ? ? -110.56 -167.71 65 12 LEU A 83 ? ? -75.55 -75.86 66 12 GLU A 108 ? ? -158.81 -34.94 67 13 THR A 9 ? ? -142.68 -98.49 68 13 LEU A 11 ? ? 76.36 160.09 69 13 TYR A 24 ? ? -131.70 -42.07 70 13 LYS A 32 ? ? -59.82 108.33 71 13 LEU A 83 ? ? -90.05 -67.05 72 13 GLU A 108 ? ? 171.18 -41.26 73 13 ALA A 116 ? ? 61.77 80.19 74 14 THR A 9 ? ? 179.70 132.11 75 14 LYS A 32 ? ? -61.12 98.78 76 14 VAL A 67 ? ? -95.41 35.09 77 14 GLU A 108 ? ? 168.55 -50.22 78 14 ARG A 112 ? ? -63.33 -72.62 79 14 ALA A 113 ? ? -177.58 -70.03 80 14 ALA A 116 ? ? 65.49 92.17 81 14 PRO A 117 ? ? -56.54 104.11 82 15 THR A 9 ? ? 175.96 142.74 83 15 LYS A 19 ? ? -69.43 97.53 84 15 TYR A 24 ? ? 78.74 -38.57 85 15 ASN A 63 ? ? 72.90 -26.10 86 15 GLU A 108 ? ? -162.13 -19.86 87 15 ALA A 113 ? ? 69.88 112.84 88 15 PRO A 117 ? ? -55.19 104.72 89 15 GLN A 119 ? ? -171.40 -173.26 90 16 THR A 9 ? ? -173.71 126.58 91 16 MET A 10 ? ? 72.80 -71.00 92 16 LEU A 11 ? ? 65.74 156.89 93 16 LEU A 83 ? ? -80.62 -71.15 94 16 GLU A 108 ? ? -164.66 -22.81 95 16 ALA A 116 ? ? 61.51 70.11 96 16 GLN A 119 ? ? -107.71 -87.57 97 17 THR A 9 ? ? -170.42 127.52 98 17 GLU A 31 ? ? 64.16 172.30 99 17 LEU A 35 ? ? -141.22 35.72 100 17 GLU A 108 ? ? 175.07 -23.69 101 17 GLN A 119 ? ? -96.30 52.30 102 18 GLU A 31 ? ? 58.25 -169.30 103 18 ALA A 55 ? ? -59.56 103.20 104 18 VAL A 104 ? ? -85.09 41.43 105 18 GLU A 108 ? ? 171.65 -30.71 106 18 ALA A 116 ? ? 60.22 74.48 107 18 GLN A 119 ? ? -92.26 -86.24 108 19 MET A 10 ? ? 62.74 65.54 109 19 VAL A 104 ? ? -66.85 90.06 110 19 GLU A 108 ? ? -179.68 -27.83 111 19 ARG A 112 ? ? -96.83 -60.85 112 19 ALA A 116 ? ? -177.96 72.38 113 20 THR A 9 ? ? -172.16 101.98 114 20 MET A 10 ? ? 69.42 64.06 115 20 LEU A 35 ? ? 74.65 -50.32 116 20 ALA A 55 ? ? -75.06 43.95 117 20 GLU A 108 ? ? -161.25 -18.75 118 20 PRO A 117 ? ? -69.71 90.69 #