HEADER TRANSCRIPTION/DNA BINDING PROTEIN 16-NOV-12 2M14 TITLE NMR STRUCTURE OF THE COMPLEX BETWEEN THE PH DOMAIN OF THE TFB1 SUBUNIT TITLE 2 FROM TFIIH AND RAD4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE II TRANSCRIPTION FACTOR B SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-115; COMPND 5 SYNONYM: GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH SUBUNIT COMPND 6 TFB1, TFIIH SUBUNIT TFB1, RNA POLYMERASE II TRANSCRIPTION FACTOR B 73 COMPND 7 KDA SUBUNIT, RNA POLYMERASE II TRANSCRIPTION FACTOR B P73 SUBUNIT; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA REPAIR PROTEIN RAD4; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 76-115; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: TFB1, YDR311W, D9740.3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-2TK; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 559292; SOURCE 14 STRAIN: ATCC 204508 / S288C; SOURCE 15 GENE: RAD4, YER162C; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PGEX-2TK KEYWDS TFB1, PH DOMAIN, TRANSCRIPTION-DNA BINDING PROTEIN COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.LAFRANCE-VANASSE,G.ARSENEAULT,L.CAPPADOCIA,P.LEGAULT,J.G.OMICHINSKI REVDAT 3 14-JUN-23 2M14 1 REMARK SEQADV REVDAT 2 06-MAR-13 2M14 1 JRNL REVDAT 1 23-JAN-13 2M14 0 JRNL AUTH J.LAFRANCE-VANASSE,G.ARSENEAULT,L.CAPPADOCIA,P.LEGAULT, JRNL AUTH 2 J.G.OMICHINSKI JRNL TITL STRUCTURAL AND FUNCTIONAL EVIDENCE THAT RAD4 COMPETES WITH JRNL TITL 2 RAD2 FOR BINDING TO THE TFB1 SUBUNIT OF TFIIH IN NER. JRNL REF NUCLEIC ACIDS RES. V. 41 2736 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23295669 JRNL DOI 10.1093/NAR/GKS1321 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000103076. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 TFB1, 1.25 MM RAD4, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM EDTA, 1 MM DTT, REMARK 210 90% H2O/10% D2O; 1 MM [U-100% REMARK 210 13C; U-100% 15N] TFB1, 1.25 MM REMARK 210 RAD4, 20 MM SODIUM PHOSPHATE, 1 REMARK 210 MM EDTA, 1 MM DTT, 100% D2O; 1 REMARK 210 MM [U-100% 15N] TFB1, 1.25 MM REMARK 210 RAD4, 20 MM SODIUM PHOSPHATE, 1 REMARK 210 MM EDTA, 1 MM DTT, 90% H2O/10% REMARK 210 D2O; 1.25 MM TFB1, 1 MM [U-100% REMARK 210 13C; U-100% 15N] RAD4, 20 MM REMARK 210 SODIUM PHOSPHATE, 1 MM EDTA, 1 REMARK 210 MM DTT, 90% H2O/10% D2O; 1.25 MM REMARK 210 TFB1, 1 MM [U-100% 13C; U-100% REMARK 210 15N] RAD4, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM EDTA, 1 MM DTT, REMARK 210 100% D2O; 1.25 MM TFB1, 1 MM [U- REMARK 210 100% 15N] RAD4, 20 MM SODIUM REMARK 210 PHOSPHATE, 1 MM EDTA, 1 MM DTT, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D H(CCO)NH; 3D HCCH- REMARK 210 COSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, VNMR, VNMRJ, NMRVIEW, REMARK 210 TALOS, NMRDRAW, NMRPIPE, CCPNMR_ REMARK 210 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 116 REMARK 465 ASN A 117 REMARK 465 SER A 118 REMARK 465 SER A 119 REMARK 465 GLY B 74 REMARK 465 SER B 75 REMARK 465 THR B 76 REMARK 465 ASP B 77 REMARK 465 ASP B 78 REMARK 465 SER B 79 REMARK 465 VAL B 80 REMARK 465 GLU B 81 REMARK 465 GLU B 82 REMARK 465 ILE B 83 REMARK 465 GLN B 84 REMARK 465 SER B 85 REMARK 465 SER B 86 REMARK 465 GLU B 87 REMARK 465 GLU B 88 REMARK 465 ASP B 89 REMARK 465 ALA B 105 REMARK 465 GLY B 106 REMARK 465 VAL B 107 REMARK 465 GLU B 108 REMARK 465 ASP B 109 REMARK 465 ILE B 110 REMARK 465 SER B 111 REMARK 465 VAL B 112 REMARK 465 GLU B 113 REMARK 465 ILE B 114 REMARK 465 LYS B 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 27 O VAL A 40 1.48 REMARK 500 O ILE A 15 H ARG A 30 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 -68.84 -99.48 REMARK 500 1 SER A 4 125.57 -175.80 REMARK 500 1 LYS A 11 -5.11 80.95 REMARK 500 1 SER A 31 166.24 -46.84 REMARK 500 1 ILE A 45 102.19 -54.06 REMARK 500 1 PRO A 52 163.73 -48.22 REMARK 500 1 VAL A 66 -123.84 -106.58 REMARK 500 1 ASP A 67 111.01 -171.41 REMARK 500 1 LYS A 70 -52.43 -142.44 REMARK 500 1 LYS A 71 153.64 61.56 REMARK 500 1 ARG A 72 -178.94 -177.01 REMARK 500 1 ASN A 75 -0.36 75.96 REMARK 500 1 GLU A 79 106.13 -58.79 REMARK 500 1 ASN A 93 160.14 178.50 REMARK 500 1 THR B 99 107.14 -47.27 REMARK 500 1 GLU B 103 -52.72 -157.14 REMARK 500 2 HIS A 3 48.00 -176.35 REMARK 500 2 SER A 4 129.53 -178.12 REMARK 500 2 LYS A 11 -3.72 80.72 REMARK 500 2 ALA A 25 120.60 60.31 REMARK 500 2 SER A 31 169.05 -47.11 REMARK 500 2 ILE A 45 105.01 -46.22 REMARK 500 2 THR A 51 103.17 -56.79 REMARK 500 2 PRO A 52 163.75 -48.45 REMARK 500 2 VAL A 66 -124.99 -108.95 REMARK 500 2 ASP A 67 86.14 -178.14 REMARK 500 2 LYS A 71 156.87 61.44 REMARK 500 2 GLU A 79 88.12 -58.94 REMARK 500 2 GLU B 103 -65.46 -105.79 REMARK 500 3 HIS A 3 39.56 -96.27 REMARK 500 3 LYS A 11 -3.77 82.01 REMARK 500 3 SER A 31 168.89 -46.82 REMARK 500 3 ILE A 45 109.97 -46.39 REMARK 500 3 PRO A 52 163.76 -47.34 REMARK 500 3 ASP A 67 -176.86 81.07 REMARK 500 3 SER A 69 42.45 -86.16 REMARK 500 3 LYS A 70 108.61 74.48 REMARK 500 3 ASN A 75 -3.25 77.45 REMARK 500 3 PRO A 84 -166.12 -61.12 REMARK 500 3 ASN B 102 31.86 -155.15 REMARK 500 4 HIS A 3 42.67 -109.14 REMARK 500 4 SER A 4 128.79 -178.41 REMARK 500 4 GLU A 10 36.02 72.31 REMARK 500 4 LYS A 11 -1.23 77.30 REMARK 500 4 SER A 31 167.61 -46.80 REMARK 500 4 ILE A 45 99.92 -48.10 REMARK 500 4 VAL A 66 -122.95 -104.09 REMARK 500 4 SER A 69 36.38 -145.65 REMARK 500 4 LYS A 70 -62.82 -130.78 REMARK 500 4 LYS A 71 114.05 61.65 REMARK 500 REMARK 500 THIS ENTRY HAS 276 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y5O RELATED DB: PDB REMARK 900 RELATED ID: 2GS0 RELATED DB: PDB REMARK 900 RELATED ID: 2K2U RELATED DB: PDB REMARK 900 RELATED ID: 2L2I RELATED DB: PDB REMARK 900 RELATED ID: 2LOX RELATED DB: PDB REMARK 900 RELATED ID: 18842 RELATED DB: BMRB DBREF 2M14 A 2 115 UNP P32776 TFB1_YEAST 2 115 DBREF 2M14 B 76 115 UNP P14736 RAD4_YEAST 76 115 SEQADV 2M14 PRO A 1 UNP P32776 EXPRESSION TAG SEQADV 2M14 GLY A 116 UNP P32776 EXPRESSION TAG SEQADV 2M14 ASN A 117 UNP P32776 EXPRESSION TAG SEQADV 2M14 SER A 118 UNP P32776 EXPRESSION TAG SEQADV 2M14 SER A 119 UNP P32776 EXPRESSION TAG SEQADV 2M14 GLY B 74 UNP P14736 EXPRESSION TAG SEQADV 2M14 SER B 75 UNP P14736 EXPRESSION TAG SEQRES 1 A 119 PRO SER HIS SER GLY ALA ALA ILE PHE GLU LYS VAL SER SEQRES 2 A 119 GLY ILE ILE ALA ILE ASN GLU ASP VAL SER PRO ALA GLU SEQRES 3 A 119 LEU THR TRP ARG SER THR ASP GLY ASP LYS VAL HIS THR SEQRES 4 A 119 VAL VAL LEU SER THR ILE ASP LYS LEU GLN ALA THR PRO SEQRES 5 A 119 ALA SER SER GLU LYS MET MET LEU ARG LEU ILE GLY LYS SEQRES 6 A 119 VAL ASP GLU SER LYS LYS ARG LYS ASP ASN GLU GLY ASN SEQRES 7 A 119 GLU VAL VAL PRO LYS PRO GLN ARG HIS MET PHE SER PHE SEQRES 8 A 119 ASN ASN ARG THR VAL MET ASP ASN ILE LYS MET THR LEU SEQRES 9 A 119 GLN GLN ILE ILE SER ARG TYR LYS ASP ALA ASP GLY ASN SEQRES 10 A 119 SER SER SEQRES 1 B 42 GLY SER THR ASP ASP SER VAL GLU GLU ILE GLN SER SER SEQRES 2 B 42 GLU GLU ASP TYR ASP SER GLU GLU PHE GLU ASP VAL THR SEQRES 3 B 42 ASP GLY ASN GLU VAL ALA GLY VAL GLU ASP ILE SER VAL SEQRES 4 B 42 GLU ILE LYS HELIX 1 1 ASN A 93 ASP A 113 1 21 SHEET 1 A 3 SER A 4 GLY A 5 0 SHEET 2 A 3 VAL A 12 ASN A 19 -1 O ILE A 16 N GLY A 5 SHEET 3 A 3 ILE A 8 PHE A 9 -1 N PHE A 9 O VAL A 12 SHEET 1 B 4 SER A 4 GLY A 5 0 SHEET 2 B 4 VAL A 12 ASN A 19 -1 O ILE A 16 N GLY A 5 SHEET 3 B 4 GLU A 26 SER A 31 -1 O ARG A 30 N ILE A 15 SHEET 4 B 4 VAL A 37 VAL A 41 -1 O VAL A 40 N LEU A 27 SHEET 1 C 3 LYS A 47 ALA A 50 0 SHEET 2 C 3 LEU A 60 ILE A 63 -1 O ILE A 63 N LYS A 47 SHEET 3 C 3 ARG A 86 MET A 88 -1 O HIS A 87 N LEU A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1