HEADER IMMUNE SYSTEM 07-DEC-12 2M1X TITLE TICAM-1 TIR DOMAIN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TIR DOMAIN-CONTAINING ADAPTER MOLECULE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 387-545; COMPND 5 SYNONYM: TICAM-1, PROLINE-RICH, VINCULIN AND TIR DOMAIN-CONTAINING COMPND 6 PROTEIN B, PUTATIVE NF-KAPPA-B-ACTIVATING PROTEIN 502H, TOLL- COMPND 7 INTERLEUKIN-1 RECEPTOR DOMAIN-CONTAINING ADAPTER PROTEIN INDUCING COMPND 8 INTERFERON BETA, TIR DOMAIN-CONTAINING ADAPTER PROTEIN INDUCING IFN- COMPND 9 BETA; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TICAM1, PRVTIRB, TRIF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET22B, PG-TF2 KEYWDS TIR DOMAIN, TICAM-1, INTERFERON, TRIF, INNATE IMMUNITY, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.ENOKIZONO,H.KUMETA,K.FUNAMI,M.HORIUCHI,J.SARMIENTO,K.YAMASHITA, AUTHOR 2 D.M.STANDLEY,M.MATSUMOTO,T.SEYA,F.INAGAKI REVDAT 2 14-JUN-23 2M1X 1 REMARK SEQADV REVDAT 1 15-JAN-14 2M1X 0 JRNL AUTH Y.ENOKIZONO,H.KUMETA,K.FUNAMI,M.HORIUCHI,J.SARMIENTO, JRNL AUTH 2 K.YAMASHITA,D.M.STANDLEY,M.MATSUMOTO,T.SEYA,F.INAGAKI JRNL TITL STRUCTURES AND INTERFACE MAPPING OF THE TIR JRNL TITL 2 DOMAIN-CONTAINING ADAPTOR MOLECULES INVOLVED IN INTERFERON JRNL TITL 3 SIGNALING. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 19908 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 24255114 JRNL DOI 10.1073/PNAS.1222811110 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, SPARKY 3.113, CYANA 2.1 REMARK 3 AUTHORS : VARIAN (VNMR), GODDARD (SPARKY), GUNTERT, REMARK 3 MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000103105. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-99% 13C; U-99% 15N] REMARK 210 TICAM-1 TIR-1, 20 MM ACOH BUFFER- REMARK 210 2, 5 MM DTT-3, 0.02 MG/ML DSS-4, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCO; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D HBHA(CO)NH; REMARK 210 3D C(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D HCACO; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2007.068.09.07, SPARKY REMARK 210 3.113, TALOS 2007.068.09.07, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 LEU A 546 REMARK 465 GLU A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 465 HIS A 550 REMARK 465 HIS A 551 REMARK 465 HIS A 552 REMARK 465 HIS A 553 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 391 -178.32 -63.10 REMARK 500 1 ALA A 402 -165.65 -56.97 REMARK 500 1 GLU A 406 -76.63 -66.43 REMARK 500 1 HIS A 407 -35.68 -38.19 REMARK 500 1 PRO A 422 -166.35 -74.95 REMARK 500 1 ALA A 425 -175.26 162.46 REMARK 500 1 ARG A 436 42.62 -93.03 REMARK 500 1 GLU A 438 -70.22 -105.52 REMARK 500 1 SER A 440 -72.60 -66.94 REMARK 500 1 ALA A 450 -76.38 -53.26 REMARK 500 1 LEU A 456 91.63 -66.03 REMARK 500 1 ARG A 479 -78.27 -76.60 REMARK 500 2 PHE A 397 136.05 -170.70 REMARK 500 2 ALA A 402 -167.18 -67.59 REMARK 500 2 GLU A 406 -75.73 -61.40 REMARK 500 2 VAL A 421 137.24 -39.49 REMARK 500 2 PRO A 422 -166.15 -75.12 REMARK 500 2 ALA A 425 -173.77 162.38 REMARK 500 2 GLU A 429 170.05 -47.11 REMARK 500 2 GLU A 438 -71.35 -99.71 REMARK 500 2 SER A 440 -73.43 -44.97 REMARK 500 2 ALA A 450 -77.76 -74.65 REMARK 500 2 LEU A 456 92.04 -68.13 REMARK 500 2 ARG A 463 -30.03 -38.89 REMARK 500 2 ASN A 470 -74.81 -56.12 REMARK 500 2 MET A 473 -71.79 -53.01 REMARK 500 2 ARG A 479 -72.80 -107.49 REMARK 500 2 PHE A 528 44.19 -85.99 REMARK 500 2 LYS A 529 157.94 -48.52 REMARK 500 2 ARG A 541 -37.38 -38.95 REMARK 500 3 GLU A 387 -174.85 -57.56 REMARK 500 3 SER A 389 56.69 71.02 REMARK 500 3 PHE A 397 141.26 -174.27 REMARK 500 3 GLU A 406 -74.84 -64.08 REMARK 500 3 HIS A 407 -34.78 -37.82 REMARK 500 3 GLU A 417 -33.35 -36.54 REMARK 500 3 VAL A 421 137.77 -39.61 REMARK 500 3 PRO A 422 -165.61 -74.99 REMARK 500 3 ALA A 425 178.28 162.88 REMARK 500 3 GLU A 429 112.36 -176.46 REMARK 500 3 PHE A 431 44.68 -108.71 REMARK 500 3 VAL A 433 -179.21 -51.09 REMARK 500 3 ARG A 436 59.97 -113.45 REMARK 500 3 GLU A 438 -62.85 -106.67 REMARK 500 3 SER A 440 -81.20 -47.68 REMARK 500 3 ALA A 450 -82.33 -67.11 REMARK 500 3 LEU A 456 91.74 -63.59 REMARK 500 3 ARG A 463 -30.17 -38.61 REMARK 500 3 LEU A 464 -71.30 -84.64 REMARK 500 3 ARG A 479 -72.13 -111.35 REMARK 500 REMARK 500 THIS ENTRY HAS 358 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18883 RELATED DB: BMRB REMARK 900 RELATED ID: 2M1W RELATED DB: PDB DBREF 2M1X A 387 545 UNP Q8IUC6 TCAM1_HUMAN 387 545 SEQADV 2M1X MET A 386 UNP Q8IUC6 EXPRESSION TAG SEQADV 2M1X HIS A 434 UNP Q8IUC6 PRO 434 ENGINEERED MUTATION SEQADV 2M1X LEU A 546 UNP Q8IUC6 EXPRESSION TAG SEQADV 2M1X GLU A 547 UNP Q8IUC6 EXPRESSION TAG SEQADV 2M1X HIS A 548 UNP Q8IUC6 EXPRESSION TAG SEQADV 2M1X HIS A 549 UNP Q8IUC6 EXPRESSION TAG SEQADV 2M1X HIS A 550 UNP Q8IUC6 EXPRESSION TAG SEQADV 2M1X HIS A 551 UNP Q8IUC6 EXPRESSION TAG SEQADV 2M1X HIS A 552 UNP Q8IUC6 EXPRESSION TAG SEQADV 2M1X HIS A 553 UNP Q8IUC6 EXPRESSION TAG SEQRES 1 A 168 MET GLU SER SER SER GLU GLN LYS PHE TYR ASN PHE VAL SEQRES 2 A 168 ILE LEU HIS ALA ARG ALA ASP GLU HIS ILE ALA LEU ARG SEQRES 3 A 168 VAL ARG GLU LYS LEU GLU ALA LEU GLY VAL PRO ASP GLY SEQRES 4 A 168 ALA THR PHE CYS GLU ASP PHE GLN VAL HIS GLY ARG GLY SEQRES 5 A 168 GLU LEU SER CYS LEU GLN ASP ALA ILE ASP HIS SER ALA SEQRES 6 A 168 PHE ILE ILE LEU LEU LEU THR SER ASN PHE ASP CYS ARG SEQRES 7 A 168 LEU SER LEU HIS GLN VAL ASN GLN ALA MET MET SER ASN SEQRES 8 A 168 LEU THR ARG GLN GLY SER PRO ASP CYS VAL ILE PRO PHE SEQRES 9 A 168 LEU PRO LEU GLU SER SER PRO ALA GLN LEU SER SER ASP SEQRES 10 A 168 THR ALA SER LEU LEU SER GLY LEU VAL ARG LEU ASP GLU SEQRES 11 A 168 HIS SER GLN ILE PHE ALA ARG LYS VAL ALA ASN THR PHE SEQRES 12 A 168 LYS PRO HIS ARG LEU GLN ALA ARG LYS ALA MET TRP ARG SEQRES 13 A 168 LYS GLU GLN ASP LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASP A 405 ALA A 418 1 14 HELIX 2 2 GLN A 443 HIS A 448 1 6 HELIX 3 3 ASP A 461 ASN A 476 1 16 HELIX 4 4 ASP A 502 LEU A 507 1 6 HELIX 5 5 ILE A 519 PHE A 528 1 10 HELIX 6 6 LYS A 529 ARG A 536 1 8 HELIX 7 7 TRP A 540 GLN A 544 5 5 SHEET 1 A 4 ILE A 399 LEU A 400 0 SHEET 2 A 4 ILE A 452 LEU A 455 1 O ILE A 453 N LEU A 400 SHEET 3 A 4 VAL A 486 LEU A 490 1 O ILE A 487 N ILE A 452 SHEET 4 A 4 LEU A 513 ASP A 514 1 O LEU A 513 N PRO A 488 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1