HEADER METAL BINDING PROTEIN 17-DEC-12 2M29 TITLE NMR STRUCTURE OF CA2+ BOUND CABP4 N-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALCIUM-BINDING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CABP4; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CABP4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28 KEYWDS METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR J.B.AMES REVDAT 2 14-JUN-23 2M29 1 REMARK LINK REVDAT 1 07-MAY-14 2M29 0 JRNL AUTH J.AMES JRNL TITL CHEMICAL SHIFT ASSIGNMENT OF CA2+ BOUND CAPB4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, X-PLOR NIH REMARK 3 AUTHORS : GODDARD (SPARKY) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M29 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAR-13. REMARK 100 THE DEPOSITION ID IS D_1000103117. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 310; 310; 310; 310 REMARK 210 PH : 7.4; 7.4; 7.4; 7.4; 7.4 REMARK 210 IONIC STRENGTH : NULL; NULL; NULL; NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT; REMARK 210 AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-13C; U-15N; U-2H] REMARK 210 CABP4, 90% H2O/10% D2O; 0.5 MM REMARK 210 [U-15N] CABP4, 90% H2O/10% D2O; REMARK 210 0.5 MM [U-13C; U-15N] CABP4, 90% REMARK 210 H2O/10% D2O; 0.5 MM CABP4, 90% REMARK 210 H2O/10% D2O; 0.5 MM [U-10% 13C; REMARK 210 U-99% 15N] CABP4, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CA)CO; TROSY HNCACB; TROSY REMARK 210 HN(CO)CACB; 3D HCCH-TOCSY; 2D 1H- REMARK 210 1H COSY; 2D 1H-1H NOESY; 13C CT- REMARK 210 HSQC; 3D 1H-15N TOCSY; 3D 1H-13C REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH 2.23 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 70 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLN A 101 REMARK 465 ASP A 102 REMARK 465 ALA A 103 REMARK 465 ALA A 104 REMARK 465 GLN A 105 REMARK 465 ARG A 106 REMARK 465 THR A 107 REMARK 465 TYR A 108 REMARK 465 GLY A 109 REMARK 465 PRO A 110 REMARK 465 LEU A 111 REMARK 465 LEU A 112 REMARK 465 ASN A 113 REMARK 465 ARG A 114 REMARK 465 MET A 115 REMARK 465 PHE A 116 REMARK 465 GLY A 117 REMARK 465 LYS A 118 REMARK 465 ASP A 119 REMARK 465 PRO A 192 REMARK 465 LYS A 193 REMARK 465 LEU A 194 REMARK 465 ARG A 195 REMARK 465 GLU A 196 REMARK 465 GLU A 197 REMARK 465 THR A 198 REMARK 465 ALA A 199 REMARK 465 HIS A 200 REMARK 465 MET A 201 REMARK 465 LEU A 202 REMARK 465 GLY A 203 REMARK 465 VAL A 204 REMARK 465 ARG A 205 REMARK 465 GLU A 206 REMARK 465 LEU A 207 REMARK 465 ARG A 208 REMARK 465 ILE A 209 REMARK 465 ALA A 210 REMARK 465 PHE A 211 REMARK 465 ARG A 212 REMARK 465 GLU A 213 REMARK 465 PHE A 214 REMARK 465 ASP A 215 REMARK 465 LYS A 216 REMARK 465 ASP A 217 REMARK 465 ARG A 218 REMARK 465 ASP A 219 REMARK 465 GLY A 220 REMARK 465 ARG A 221 REMARK 465 ILE A 222 REMARK 465 THR A 223 REMARK 465 VAL A 224 REMARK 465 ALA A 225 REMARK 465 GLU A 226 REMARK 465 LEU A 227 REMARK 465 ARG A 228 REMARK 465 GLN A 229 REMARK 465 ALA A 230 REMARK 465 ALA A 231 REMARK 465 PRO A 232 REMARK 465 ALA A 233 REMARK 465 LEU A 234 REMARK 465 LEU A 235 REMARK 465 GLY A 236 REMARK 465 GLU A 237 REMARK 465 PRO A 238 REMARK 465 LEU A 239 REMARK 465 GLU A 240 REMARK 465 GLY A 241 REMARK 465 THR A 242 REMARK 465 GLU A 243 REMARK 465 LEU A 244 REMARK 465 ASP A 245 REMARK 465 GLU A 246 REMARK 465 MET A 247 REMARK 465 LEU A 248 REMARK 465 ARG A 249 REMARK 465 GLU A 250 REMARK 465 MET A 251 REMARK 465 ASP A 252 REMARK 465 LEU A 253 REMARK 465 ASN A 254 REMARK 465 GLY A 255 REMARK 465 ASP A 256 REMARK 465 GLY A 257 REMARK 465 THR A 258 REMARK 465 ILE A 259 REMARK 465 ASP A 260 REMARK 465 PHE A 261 REMARK 465 ASP A 262 REMARK 465 GLU A 263 REMARK 465 PHE A 264 REMARK 465 VAL A 265 REMARK 465 MET A 266 REMARK 465 MET A 267 REMARK 465 LEU A 268 REMARK 465 SER A 269 REMARK 465 THR A 270 REMARK 465 GLY A 271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 147 -34.32 -133.67 REMARK 500 1 THR A 162 -91.39 -73.60 REMARK 500 1 GLU A 163 -44.54 -175.08 REMARK 500 1 LYS A 174 -14.33 61.82 REMARK 500 1 MET A 177 176.45 -47.12 REMARK 500 2 TYR A 147 -161.00 -102.60 REMARK 500 2 ARG A 148 -72.67 58.54 REMARK 500 2 GLU A 149 -19.70 -43.95 REMARK 500 2 LEU A 157 35.09 -152.15 REMARK 500 2 MET A 160 -61.79 -151.20 REMARK 500 2 ARG A 176 78.25 -69.62 REMARK 500 2 MET A 177 32.42 33.50 REMARK 500 3 GLN A 141 25.86 40.23 REMARK 500 3 TYR A 147 -172.71 -50.29 REMARK 500 3 ARG A 148 -37.86 69.83 REMARK 500 3 THR A 156 -7.30 -57.47 REMARK 500 3 PRO A 161 157.50 -44.91 REMARK 500 3 HIS A 172 -9.95 -52.12 REMARK 500 3 LYS A 174 -67.74 62.77 REMARK 500 3 MET A 175 -82.58 -58.91 REMARK 500 3 ARG A 176 -43.31 -175.63 REMARK 500 3 MET A 177 147.12 -171.61 REMARK 500 4 LEU A 122 107.85 53.74 REMARK 500 4 ASP A 138 75.22 -155.76 REMARK 500 4 TYR A 147 -169.20 -53.62 REMARK 500 4 ARG A 148 -70.29 61.33 REMARK 500 4 THR A 156 -3.44 -52.14 REMARK 500 4 LEU A 157 40.33 -146.43 REMARK 500 4 TYR A 159 3.14 56.80 REMARK 500 4 MET A 160 98.49 -34.93 REMARK 500 4 PRO A 161 -179.97 -50.83 REMARK 500 4 THR A 162 -94.57 -47.23 REMARK 500 4 GLU A 163 -30.77 -175.02 REMARK 500 5 TYR A 147 -34.33 -134.38 REMARK 500 5 LEU A 157 44.75 -172.26 REMARK 500 5 TYR A 159 43.54 -104.55 REMARK 500 5 MET A 160 67.08 62.89 REMARK 500 5 THR A 162 -99.86 -47.53 REMARK 500 5 GLU A 163 -30.67 -173.51 REMARK 500 5 HIS A 172 -9.90 -52.14 REMARK 500 5 MET A 175 107.41 53.16 REMARK 500 5 ARG A 176 24.80 -172.76 REMARK 500 5 MET A 177 105.36 54.84 REMARK 500 6 GLU A 121 -75.13 -81.23 REMARK 500 6 ASP A 138 58.97 -90.17 REMARK 500 6 THR A 156 -4.39 -59.36 REMARK 500 6 THR A 162 -89.57 -69.13 REMARK 500 6 GLU A 163 -37.55 -174.99 REMARK 500 6 ARG A 176 -54.39 -120.25 REMARK 500 6 ASP A 182 -179.18 -69.59 REMARK 500 REMARK 500 THIS ENTRY HAS 114 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD1 REMARK 620 2 ASP A 140 OD1 67.8 REMARK 620 3 ASP A 140 OD2 93.3 42.7 REMARK 620 4 ASP A 142 OD1 72.1 98.2 74.0 REMARK 620 5 ASP A 142 OD2 111.3 94.6 52.8 44.2 REMARK 620 6 TYR A 144 O 116.9 147.9 106.1 57.9 53.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18877 RELATED DB: BMRB REMARK 900 RELATED ID: 2M28 RELATED DB: PDB DBREF 2M29 A 101 271 UNP Q8VHC5 CABP4_MOUSE 101 271 SEQRES 1 A 171 GLN ASP ALA ALA GLN ARG THR TYR GLY PRO LEU LEU ASN SEQRES 2 A 171 ARG MET PHE GLY LYS ASP ARG GLU LEU GLY PRO GLU GLU SEQRES 3 A 171 LEU GLU GLU LEU GLN ALA ALA PHE GLU GLU PHE ASP THR SEQRES 4 A 171 ASP GLN ASP GLY TYR ILE GLY TYR ARG GLU LEU GLY ASP SEQRES 5 A 171 CYS MET ARG THR LEU GLY TYR MET PRO THR GLU MET GLU SEQRES 6 A 171 LEU LEU GLU VAL SER GLN HIS VAL LYS MET ARG MET GLY SEQRES 7 A 171 GLY PHE VAL ASP PHE GLU GLU PHE VAL GLU LEU ILE SER SEQRES 8 A 171 PRO LYS LEU ARG GLU GLU THR ALA HIS MET LEU GLY VAL SEQRES 9 A 171 ARG GLU LEU ARG ILE ALA PHE ARG GLU PHE ASP LYS ASP SEQRES 10 A 171 ARG ASP GLY ARG ILE THR VAL ALA GLU LEU ARG GLN ALA SEQRES 11 A 171 ALA PRO ALA LEU LEU GLY GLU PRO LEU GLU GLY THR GLU SEQRES 12 A 171 LEU ASP GLU MET LEU ARG GLU MET ASP LEU ASN GLY ASP SEQRES 13 A 171 GLY THR ILE ASP PHE ASP GLU PHE VAL MET MET LEU SER SEQRES 14 A 171 THR GLY HET CA A 401 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ HELIX 1 1 GLY A 123 ASP A 138 1 16 HELIX 2 2 TYR A 147 GLU A 149 5 3 HELIX 3 3 LEU A 150 THR A 156 1 7 HELIX 4 4 GLU A 163 HIS A 172 1 10 HELIX 5 5 ASP A 182 SER A 191 1 10 LINK OD1 ASP A 138 CA CA A 401 1555 1555 2.04 LINK OD1 ASP A 140 CA CA A 401 1555 1555 2.18 LINK OD2 ASP A 140 CA CA A 401 1555 1555 3.17 LINK OD1 ASP A 142 CA CA A 401 1555 1555 2.34 LINK OD2 ASP A 142 CA CA A 401 1555 1555 3.09 LINK O TYR A 144 CA CA A 401 1555 1555 2.85 SITE 1 AC1 4 ASP A 138 ASP A 140 ASP A 142 TYR A 144 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1