HEADER HYDROLASE 26-JAN-13 2M3V TITLE SOLUTION STRUCTURE OF TYROSINE PHOSPHATASE RELATED TO BIOFILM TITLE 2 FORMATION A (TPBA) FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208963; SOURCE 4 STRAIN: UCBPP-PA14; SOURCE 5 GENE: PA14_13660; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PRP1B KEYWDS DUAL SPECIFICITY PHOSPHATASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.KOVEAL,W.PETI,R.PAGE REVDAT 5 15-MAY-24 2M3V 1 REMARK REVDAT 4 14-JUN-23 2M3V 1 REMARK SEQADV REVDAT 3 12-JUN-13 2M3V 1 JRNL REVDAT 2 22-MAY-13 2M3V 1 JRNL REVDAT 1 03-APR-13 2M3V 0 JRNL AUTH D.KOVEAL,M.W.CLARKSON,T.K.WOOD,R.PAGE,W.PETI JRNL TITL LIGAND BINDING REDUCES CONFORMATIONAL FLEXIBILITY IN THE JRNL TITL 2 ACTIVE SITE OF TYROSINE PHOSPHATASE RELATED TO BIOFILM JRNL TITL 3 FORMATION A (TPBA) FROM PSEUDOMONASAERUGINOSA. JRNL REF J.MOL.BIOL. V. 425 2219 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23524133 JRNL DOI 10.1016/J.JMB.2013.03.023 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CNS_1.3 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS_1.3) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RECOORD SCRIPTS WERE USED (NEDERVEEN ET REMARK 3 AL. PROTEINS. 2005.) REMARK 4 REMARK 4 2M3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000103175. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.8 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-99% 15N] TPBA, 10 MM REMARK 210 TRIS, 100 MM SODIUM CHLORIDE, REMARK 210 0.5 MM TCEP, 90% H2O/10% D2O; REMARK 210 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 TPBA, 10 MM TRIS, 100 MM SODIUM REMARK 210 CHLORIDE, 0.5 MM TCEP-8, 90% H2O/ REMARK 210 10% D2O; 1.0 MM TPBA-9, 10 MM REMARK 210 TRIS, 100 MM SODIUM CHLORIDE, REMARK 210 0.5 MM TCEP, 100% D2O; 1.0 MM [U- REMARK 210 99% 13C; U-99% 15N; U-48% 2H] REMARK 210 TPBA, 10 MM TRIS, 100 MM SODIUM REMARK 210 CHLORIDE, 0.5 MM TCEP, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCA; 3D HNCACB; REMARK 210 3D HBHA(CO)NH; 3D 1H-15N NOESY; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H NOESY; REMARK 210 3D HCCH-TOCSY; 3D HCCH-COSY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CARA, CYANA_2.1, TALOS+ REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 31 26.43 -162.83 REMARK 500 1 ALA A 33 164.69 69.25 REMARK 500 1 PRO A 34 -176.92 -65.73 REMARK 500 1 SER A 36 104.40 -31.76 REMARK 500 1 TRP A 39 -74.00 -78.08 REMARK 500 1 MET A 52 -169.59 -125.25 REMARK 500 1 PRO A 54 28.11 -60.35 REMARK 500 1 ALA A 60 -53.22 -138.51 REMARK 500 1 PRO A 94 42.18 -78.48 REMARK 500 1 ASP A 105 81.26 -152.33 REMARK 500 1 VAL A 107 101.42 -57.13 REMARK 500 1 ASP A 172 58.37 -99.31 REMARK 500 1 CYS A 205 -73.59 -65.42 REMARK 500 1 HIS A 206 -33.28 -154.07 REMARK 500 1 VAL A 207 20.01 -76.54 REMARK 500 1 GLU A 209 39.24 70.80 REMARK 500 1 ARG A 217 129.08 71.36 REMARK 500 2 HIS A 27 102.11 69.97 REMARK 500 2 SER A 36 108.60 -34.38 REMARK 500 2 MET A 52 -163.37 -105.54 REMARK 500 2 PRO A 54 21.52 -57.37 REMARK 500 2 LYS A 133 -86.99 58.47 REMARK 500 2 HIS A 134 16.17 -161.06 REMARK 500 2 ASP A 169 -168.68 -167.70 REMARK 500 2 ALA A 212 93.08 66.90 REMARK 500 2 ALA A 214 106.82 70.78 REMARK 500 3 TRP A 39 -78.60 -75.39 REMARK 500 3 MET A 52 -166.55 -110.67 REMARK 500 3 PRO A 54 23.59 -59.91 REMARK 500 3 ALA A 60 -36.10 -139.66 REMARK 500 3 PRO A 94 40.69 -86.89 REMARK 500 3 ASP A 105 43.89 -148.05 REMARK 500 3 VAL A 107 110.01 -39.97 REMARK 500 3 HIS A 134 -38.85 75.80 REMARK 500 3 ASP A 169 158.26 73.97 REMARK 500 3 MET A 173 80.84 50.41 REMARK 500 3 CYS A 197 81.25 175.54 REMARK 500 3 ARG A 201 -63.10 -133.65 REMARK 500 3 ALA A 203 -36.88 -132.17 REMARK 500 4 ALA A 29 -145.22 -125.59 REMARK 500 4 SER A 36 108.55 -47.54 REMARK 500 4 PRO A 37 106.21 -56.43 REMARK 500 4 MET A 52 -163.11 -100.58 REMARK 500 4 PRO A 54 23.00 -59.84 REMARK 500 4 ALA A 60 -52.51 -139.91 REMARK 500 4 VAL A 107 100.83 -43.10 REMARK 500 4 LYS A 133 -54.02 -143.35 REMARK 500 4 ASP A 172 -86.29 -168.00 REMARK 500 4 ASP A 216 -162.18 -123.87 REMARK 500 5 HIS A 27 81.33 63.04 REMARK 500 REMARK 500 THIS ENTRY HAS 241 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 147 0.08 SIDE CHAIN REMARK 500 3 ARG A 201 0.13 SIDE CHAIN REMARK 500 5 ARG A 58 0.08 SIDE CHAIN REMARK 500 5 ARG A 147 0.08 SIDE CHAIN REMARK 500 6 ARG A 174 0.09 SIDE CHAIN REMARK 500 7 ARG A 58 0.09 SIDE CHAIN REMARK 500 8 ARG A 87 0.09 SIDE CHAIN REMARK 500 8 ARG A 106 0.12 SIDE CHAIN REMARK 500 10 ARG A 58 0.07 SIDE CHAIN REMARK 500 10 ARG A 96 0.09 SIDE CHAIN REMARK 500 11 ARG A 201 0.10 SIDE CHAIN REMARK 500 15 ARG A 201 0.08 SIDE CHAIN REMARK 500 15 ARG A 208 0.09 SIDE CHAIN REMARK 500 16 ARG A 87 0.08 SIDE CHAIN REMARK 500 16 ARG A 164 0.08 SIDE CHAIN REMARK 500 18 ARG A 147 0.11 SIDE CHAIN REMARK 500 19 ARG A 58 0.10 SIDE CHAIN REMARK 500 20 ARG A 217 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18228 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT ASSIGNMENT, TPBA DBREF 2M3V A 29 218 UNP Q02S50 Q02S50_PSEAB 29 218 SEQADV 2M3V GLY A 26 UNP Q02S50 EXPRESSION TAG SEQADV 2M3V HIS A 27 UNP Q02S50 EXPRESSION TAG SEQADV 2M3V MET A 28 UNP Q02S50 EXPRESSION TAG SEQRES 1 A 193 GLY HIS MET ALA GLU THR ALA ALA PRO ARG SER PRO ALA SEQRES 2 A 193 TRP ALA GLN ALA VAL ASP PRO SER ILE ASN LEU TYR ARG SEQRES 3 A 193 MET SER PRO THR LEU TYR ARG SER ALA LEU PRO ASN ALA SEQRES 4 A 193 GLN SER VAL ALA LEU LEU GLN ARG LEU GLN VAL LYS THR SEQRES 5 A 193 VAL VAL SER PHE ILE LYS ASP ASP ASP ARG ALA TRP LEU SEQRES 6 A 193 GLY GLN ALA PRO VAL ARG VAL VAL SER LEU PRO THR HIS SEQRES 7 A 193 ALA ASP ARG VAL ASP ASP ALA GLU VAL LEU SER VAL LEU SEQRES 8 A 193 ARG GLN LEU GLN ALA ALA GLU ARG GLU GLY PRO VAL LEU SEQRES 9 A 193 MET HIS CYS LYS HIS GLY ASN ASN ARG THR GLY LEU PHE SEQRES 10 A 193 ALA ALA MET TYR ARG ILE VAL VAL GLN GLY TRP ASP LYS SEQRES 11 A 193 GLN ALA ALA LEU GLU GLU MET GLN ARG GLY GLY PHE GLY SEQRES 12 A 193 ASP GLU ASP ASP MET ARG ASP ALA SER ALA TYR VAL ARG SEQRES 13 A 193 GLY ALA ASP VAL ASP GLY LEU ARG LEU ALA MET ALA ASN SEQRES 14 A 193 GLY GLU CYS SER PRO SER ARG PHE ALA LEU CYS HIS VAL SEQRES 15 A 193 ARG GLU TRP MET ALA GLN ALA LEU ASP ARG PRO HELIX 1 1 ASN A 63 GLN A 65 5 3 HELIX 2 2 SER A 66 GLN A 74 1 9 HELIX 3 3 ASP A 86 GLY A 91 1 6 HELIX 4 4 ASP A 108 GLU A 123 1 16 HELIX 5 5 GLY A 135 GLY A 152 1 18 HELIX 6 6 ASP A 154 ALA A 157 5 4 HELIX 7 7 ALA A 158 GLN A 163 1 6 HELIX 8 8 ASP A 175 ALA A 183 1 9 HELIX 9 9 ASP A 184 ASN A 194 1 11 SHEET 1 A 2 GLN A 41 ASP A 44 0 SHEET 2 A 2 LEU A 49 ARG A 51 -1 O LEU A 49 N ASP A 44 SHEET 1 B 2 TYR A 57 SER A 59 0 SHEET 2 B 2 LEU A 129 HIS A 131 1 O MET A 130 N TYR A 57 SHEET 1 C 2 THR A 77 VAL A 78 0 SHEET 2 C 2 ARG A 96 VAL A 97 1 O ARG A 96 N VAL A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1