HEADER HYDROLASE 29-JAN-13 2M45 TITLE NMR SOLUTION STRUCTURE OF THE C-TERMINUS OF THE MINICHROMOSOME TITLE 2 MAINTENANCE PROTEIN MCM FROM SULFOLOBUS SOLFATARICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINICHROMOSOME MAINTENANCE PROTEIN MCM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 605-686; COMPND 5 EC: 3.6.4.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: ATCC 35092; SOURCE 5 GENE: MCM, SSO0774; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET-15B KEYWDS MINICHROMOSOME MAINTENANCE PROTEIN, MCM, WINGED HELIX, HYDROLASE, KEYWDS 2 HELIX-TURN-HELIX, WINGED HELIX TURN, DNA HELICASE, THERMOPHILE KEYWDS 3 PROTEINS, PRE-REPLICATIVE COMPLEX, REPLICATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.WIEDEMANN,O.OHLENSCHLAGER,B.MEDAGLI,S.ONESTI,M.GORLACH REVDAT 3 14-JUN-23 2M45 1 REMARK SEQADV REVDAT 2 20-MAY-15 2M45 1 JRNL REVDAT 1 29-JAN-14 2M45 0 JRNL AUTH C.WIEDEMANN,A.SZAMBOWSKA,S.HAFNER,O.OHLENSCHLAGER,K.H.GUHRS, JRNL AUTH 2 M.GORLACH JRNL TITL STRUCTURE AND REGULATORY ROLE OF THE C-TERMINAL WINGED HELIX JRNL TITL 2 DOMAIN OF THE ARCHAEAL MINICHROMOSOME MAINTENANCE COMPLEX JRNL REF NUCLEIC ACIDS RES. V. 43 2958 2015 JRNL REFN ISSN 0305-1048 JRNL PMID 25712103 JRNL DOI 10.1093/NAR/GKV120 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3, OPAL, CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-13. REMARK 100 THE DEPOSITION ID IS D_1000103185. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.2 REMARK 210 IONIC STRENGTH : 160 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 700 UM [U-100% 13C; U-100% 15N] REMARK 210 C-TERMINUS OF THE MINICHROMOSOME REMARK 210 MAINTENANCE PROTEIN MCM-1, 10 MM REMARK 210 POTASSIUM PHOSPHATE-2, 150 MM REMARK 210 SODIUM CHLORIDE-3, 0.05 W/V REMARK 210 SODIUM AZIDE-4, 90% H2O/10% D2O; REMARK 210 700 UM [U-100% 13C; U-100% 15N] REMARK 210 C-TERMINUS OF THE MINICHROMOSOME REMARK 210 MAINTENANCE PROTEIN MCM-5, 10 MM REMARK 210 POTASSIUM PHOSPHATE-6, 150 MM REMARK 210 SODIUM CHLORIDE-7, 0.05 W/V REMARK 210 SODIUM AZIDE-8, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCACB; 3D HNCO; 3D REMARK 210 HCACO; 3D HNHA; 3D HCCH-COSY; 3D REMARK 210 1H-15N TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, CCPNMR REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH TYR A 676 O VAL A 686 1.40 REMARK 500 HG SER A 606 OD1 ASP A 610 1.44 REMARK 500 O GLU A 631 HG SER A 635 1.51 REMARK 500 HG SER A 640 O CYS A 642 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 5 TYR A 676 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 7 ARG A 623 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 15 ARG A 623 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 614 -61.36 -90.74 REMARK 500 1 SER A 639 37.96 -149.73 REMARK 500 1 GLU A 677 -80.78 -85.11 REMARK 500 1 ALA A 678 -9.41 61.35 REMARK 500 2 LYS A 608 27.01 -144.98 REMARK 500 2 ILE A 614 -63.34 -93.35 REMARK 500 3 LYS A 608 93.12 -66.86 REMARK 500 3 ILE A 614 -66.96 -92.00 REMARK 500 3 ALA A 678 -32.57 -143.91 REMARK 500 3 PRO A 680 108.51 -50.95 REMARK 500 3 GLU A 681 -4.83 114.70 REMARK 500 4 ILE A 614 -65.55 -94.71 REMARK 500 4 SER A 640 12.58 -165.37 REMARK 500 4 GLU A 641 -13.02 65.50 REMARK 500 4 LYS A 659 -68.22 -27.52 REMARK 500 4 GLU A 677 -70.39 -70.72 REMARK 500 4 ALA A 678 -19.54 56.18 REMARK 500 5 LYS A 659 -69.15 -29.31 REMARK 500 5 ALA A 678 -41.61 -142.50 REMARK 500 6 SER A 606 -168.94 -171.72 REMARK 500 6 ILE A 609 84.24 49.18 REMARK 500 7 SER A 639 -24.35 -150.50 REMARK 500 8 SER A 621 -38.21 -39.13 REMARK 500 8 SER A 639 33.08 -152.96 REMARK 500 8 GLU A 677 -68.43 -98.35 REMARK 500 8 ALA A 678 -24.83 62.81 REMARK 500 8 GLU A 681 -7.92 62.17 REMARK 500 9 SER A 606 86.15 -152.17 REMARK 500 9 LYS A 608 68.78 28.42 REMARK 500 9 ALA A 622 -71.90 -52.61 REMARK 500 9 LYS A 659 -69.47 -18.99 REMARK 500 10 LYS A 608 27.00 -142.83 REMARK 500 10 ILE A 614 -65.30 -93.07 REMARK 500 10 LYS A 659 -66.69 -27.32 REMARK 500 10 PRO A 680 24.12 -66.63 REMARK 500 10 GLU A 681 15.39 -152.01 REMARK 500 11 ASP A 610 -161.99 -77.14 REMARK 500 11 ILE A 614 -60.17 -107.08 REMARK 500 11 SER A 639 34.04 -152.21 REMARK 500 11 LYS A 659 -63.16 -25.69 REMARK 500 11 GLU A 681 -3.46 66.46 REMARK 500 12 HIS A 602 -8.48 48.95 REMARK 500 12 LYS A 659 -65.70 -29.90 REMARK 500 12 PRO A 680 23.93 -65.92 REMARK 500 12 GLU A 681 0.62 -152.38 REMARK 500 13 ILE A 609 122.18 80.01 REMARK 500 13 LYS A 625 -71.50 -77.22 REMARK 500 13 SER A 639 -26.72 -156.81 REMARK 500 13 LYS A 659 -61.66 -27.00 REMARK 500 13 GLU A 677 -77.53 -84.85 REMARK 500 REMARK 500 THIS ENTRY HAS 82 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 600 SER A 601 7 138.95 REMARK 500 GLY A 600 SER A 601 8 137.95 REMARK 500 GLY A 600 SER A 601 16 137.23 REMARK 500 GLY A 600 SER A 601 17 148.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 623 0.10 SIDE CHAIN REMARK 500 1 ARG A 670 0.10 SIDE CHAIN REMARK 500 2 ARG A 623 0.12 SIDE CHAIN REMARK 500 2 TYR A 676 0.07 SIDE CHAIN REMARK 500 2 TYR A 683 0.08 SIDE CHAIN REMARK 500 3 ARG A 623 0.09 SIDE CHAIN REMARK 500 3 ARG A 670 0.13 SIDE CHAIN REMARK 500 5 ARG A 670 0.10 SIDE CHAIN REMARK 500 5 TYR A 676 0.08 SIDE CHAIN REMARK 500 6 ARG A 670 0.13 SIDE CHAIN REMARK 500 7 ARG A 623 0.12 SIDE CHAIN REMARK 500 7 ARG A 670 0.14 SIDE CHAIN REMARK 500 7 TYR A 683 0.09 SIDE CHAIN REMARK 500 8 ARG A 623 0.18 SIDE CHAIN REMARK 500 8 ARG A 670 0.12 SIDE CHAIN REMARK 500 8 TYR A 676 0.07 SIDE CHAIN REMARK 500 8 TYR A 683 0.09 SIDE CHAIN REMARK 500 10 ARG A 670 0.11 SIDE CHAIN REMARK 500 11 ARG A 670 0.08 SIDE CHAIN REMARK 500 11 TYR A 683 0.08 SIDE CHAIN REMARK 500 13 ARG A 670 0.15 SIDE CHAIN REMARK 500 15 ARG A 670 0.10 SIDE CHAIN REMARK 500 15 TYR A 676 0.08 SIDE CHAIN REMARK 500 16 ARG A 623 0.09 SIDE CHAIN REMARK 500 16 TYR A 676 0.10 SIDE CHAIN REMARK 500 17 ARG A 670 0.09 SIDE CHAIN REMARK 500 17 TYR A 676 0.08 SIDE CHAIN REMARK 500 17 TYR A 683 0.07 SIDE CHAIN REMARK 500 18 ARG A 623 0.15 SIDE CHAIN REMARK 500 19 ARG A 670 0.10 SIDE CHAIN REMARK 500 19 TYR A 676 0.07 SIDE CHAIN REMARK 500 20 TYR A 683 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 18986 RELATED DB: BMRB DBREF 2M45 A 605 686 UNP Q9UXG1 MCM_SULSO 605 686 SEQADV 2M45 GLY A 600 UNP Q9UXG1 EXPRESSION TAG SEQADV 2M45 SER A 601 UNP Q9UXG1 EXPRESSION TAG SEQADV 2M45 HIS A 602 UNP Q9UXG1 EXPRESSION TAG SEQADV 2M45 MET A 603 UNP Q9UXG1 EXPRESSION TAG SEQADV 2M45 GLY A 604 UNP Q9UXG1 EXPRESSION TAG SEQRES 1 A 87 GLY SER HIS MET GLY GLU SER GLY LYS ILE ASP ILE ASP SEQRES 2 A 87 THR ILE MET THR GLY LYS PRO LYS SER ALA ARG GLU LYS SEQRES 3 A 87 MET MET LYS ILE ILE GLU ILE ILE ASP SER LEU ALA VAL SEQRES 4 A 87 SER SER GLU CYS ALA LYS VAL LYS ASP ILE LEU LYS GLU SEQRES 5 A 87 ALA GLN GLN VAL GLY ILE GLU LYS SER ASN ILE GLU LYS SEQRES 6 A 87 LEU LEU THR ASP MET ARG LYS SER GLY ILE ILE TYR GLU SEQRES 7 A 87 ALA LYS PRO GLU CYS TYR LYS LYS VAL HELIX 1 1 ILE A 611 THR A 616 1 6 HELIX 2 2 LYS A 620 VAL A 638 1 19 HELIX 3 3 VAL A 645 GLY A 656 1 12 HELIX 4 4 GLU A 658 GLY A 673 1 16 SHEET 1 A 3 ALA A 643 LYS A 644 0 SHEET 2 A 3 CYS A 682 LYS A 685 -1 O TYR A 683 N ALA A 643 SHEET 3 A 3 ILE A 675 LYS A 679 -1 N TYR A 676 O LYS A 684 SSBOND 1 CYS A 642 CYS A 682 1555 1555 2.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1