HEADER VIRAL PROTEIN 05-FEB-13 2M4H TITLE SOLUTION STRUCTURE OF THE CORE DOMAIN (10-76) OF THE FELINE TITLE 2 CALICIVIRUS VPG PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FELINE CALICIVIRUS VPG PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CORE DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELINE CALICIVIRUS; SOURCE 3 ORGANISM_COMMON: FCV; SOURCE 4 ORGANISM_TAXID: 11981; SOURCE 5 STRAIN: F9; SOURCE 6 GENE: ORF1, VPG; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS VIRAL PROTEIN, NS5, VPG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.N.KWOK,E.N.LEEN,J.R.BIRTLEY,S.N.PRATER,P.J.SIMPSON,S.CURRY, AUTHOR 2 S.MATTHEWS,J.MARCHANT REVDAT 4 14-JUN-23 2M4H 1 REMARK REVDAT 3 05-OCT-16 2M4H 1 SEQRES REVDAT 2 08-MAY-13 2M4H 1 JRNL REVDAT 1 27-MAR-13 2M4H 0 JRNL AUTH E.N.LEEN,K.Y.KWOK,J.R.BIRTLEY,P.J.SIMPSON,C.V.SUBBA-REDDY, JRNL AUTH 2 Y.CHAUDHRY,S.V.SOSNOVTSEV,K.Y.GREEN,S.N.PRATER,M.TONG, JRNL AUTH 3 J.C.YOUNG,L.M.CHUNG,J.MARCHANT,L.O.ROBERTS,C.C.KAO, JRNL AUTH 4 S.MATTHEWS,I.G.GOODFELLOW,S.CURRY JRNL TITL STRUCTURES OF THE COMPACT HELICAL CORE DOMAINS OF FELINE JRNL TITL 2 CALICIVIRUS AND MURINE NOROVIRUS VPG PROTEINS. JRNL REF J.VIROL. V. 87 5318 2013 JRNL REFN ISSN 0022-538X JRNL PMID 23487472 JRNL DOI 10.1128/JVI.03151-12 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TALOS, CNS REMARK 3 AUTHORS : CORNILESCU, DELAGLIO AND BAX (TALOS), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M4H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000103197. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 283; 280 REMARK 210 PH : 7.0; 7.0; 7.0 REMARK 210 IONIC STRENGTH : 300; 300; 300 REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 100-200 UM [U-99% 13C; U-99% REMARK 210 15N] FCV VPG 7-76, 300 MM SODIUM REMARK 210 CHLORIDE, 20 MM HEPES, 1 MM REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 100-200 UM [U-99% 13C; U-99% 15N] REMARK 210 FCV VPG 7-76, 300 MM SODIUM REMARK 210 CHLORIDE, 1 MM SODIUM AZIDE, 20 REMARK 210 MM HEPES, 100% D2O; 100-200 UM REMARK 210 [U-99% 13C; U-99% 15N] FCV VPG 7- REMARK 210 76, 300 MM SODIUM CHLORIDE, 1 MM REMARK 210 SODIUM AZIDE, 20 MM HEPES, 15 MG/ REMARK 210 ML PF1 PHAGE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D REMARK 210 HBHA(CBCACO)NH; 3D 1H-15N NOESY; REMARK 210 3D HCCH-TOCSY; 3D 1H-13C NOESY; REMARK 210 2D 1H-13C HSQC AROMATIC; 2D 1H- REMARK 210 13C HSQC ALIPHATIC; 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA, NMRVIEW, MARS, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ILE A 9 REMARK 465 GLU A 77 REMARK 465 ASP A 78 REMARK 465 VAL A 79 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 3 TYR A 24 CE1 TYR A 24 CZ -0.096 REMARK 500 3 TYR A 24 CZ TYR A 24 CE2 0.094 REMARK 500 7 TYR A 24 CE1 TYR A 24 CZ -0.083 REMARK 500 8 TYR A 24 CE1 TYR A 24 CZ -0.102 REMARK 500 8 TYR A 24 CZ TYR A 24 CE2 0.102 REMARK 500 18 TYR A 24 CE1 TYR A 24 CZ -0.080 REMARK 500 18 TYR A 24 CZ TYR A 24 CE2 0.078 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 11 -111.62 -70.70 REMARK 500 1 TYR A 12 -161.70 -162.32 REMARK 500 1 ARG A 15 44.83 -80.21 REMARK 500 1 LEU A 19 171.02 63.33 REMARK 500 1 LEU A 52 -72.41 -77.90 REMARK 500 1 THR A 70 -60.73 -106.07 REMARK 500 1 MET A 72 -166.19 48.94 REMARK 500 1 ASN A 74 80.21 -41.34 REMARK 500 2 THR A 11 -143.09 -141.76 REMARK 500 2 ARG A 15 47.68 -78.33 REMARK 500 2 LEU A 19 -179.44 58.74 REMARK 500 2 LEU A 52 -71.79 -80.59 REMARK 500 2 THR A 70 -64.80 -96.61 REMARK 500 2 MET A 72 -166.04 47.52 REMARK 500 2 ASN A 74 -87.65 43.84 REMARK 500 2 ASP A 75 34.61 -150.44 REMARK 500 3 THR A 11 -143.36 -150.61 REMARK 500 3 ARG A 15 37.91 -162.44 REMARK 500 3 LEU A 19 177.24 59.47 REMARK 500 3 ASP A 55 43.84 -108.48 REMARK 500 3 MET A 72 -165.37 43.67 REMARK 500 3 ALA A 73 80.55 -166.12 REMARK 500 3 ASN A 74 -69.16 -19.10 REMARK 500 3 ASP A 75 39.59 -149.87 REMARK 500 4 THR A 11 -148.66 -130.62 REMARK 500 4 TYR A 12 -156.66 -144.87 REMARK 500 4 ARG A 15 33.45 -179.31 REMARK 500 4 LEU A 19 -172.35 60.86 REMARK 500 4 LEU A 52 -73.16 -89.22 REMARK 500 4 MET A 72 -163.60 44.68 REMARK 500 4 ALA A 73 84.80 -157.53 REMARK 500 4 ASN A 74 -55.82 -25.81 REMARK 500 4 ASP A 75 30.62 -159.14 REMARK 500 5 THR A 11 -155.50 -111.88 REMARK 500 5 TYR A 12 -155.34 -132.99 REMARK 500 5 ARG A 13 115.84 -169.48 REMARK 500 5 LEU A 19 178.27 62.77 REMARK 500 5 LEU A 36 -169.22 -109.32 REMARK 500 5 LEU A 52 -77.04 -82.99 REMARK 500 5 ASP A 55 47.83 -109.41 REMARK 500 5 MET A 72 -165.90 43.87 REMARK 500 5 ALA A 73 50.06 -145.55 REMARK 500 5 ASN A 74 -95.71 18.38 REMARK 500 6 THR A 11 -143.70 -141.56 REMARK 500 6 ARG A 13 141.55 -176.51 REMARK 500 6 ARG A 15 -166.83 -173.34 REMARK 500 6 LEU A 19 179.80 59.51 REMARK 500 6 THR A 20 -177.16 -67.67 REMARK 500 6 LEU A 36 -168.29 -101.90 REMARK 500 6 LEU A 52 -70.02 -80.67 REMARK 500 REMARK 500 THIS ENTRY HAS 177 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19003 RELATED DB: BMRB DBREF 2M4H A 9 79 UNP P27409 POLG_FCVF9 969 1039 SEQRES 1 A 71 ILE GLY THR TYR ARG GLY ARG GLY VAL ALA LEU THR ASP SEQRES 2 A 71 ASP GLU TYR ASP GLU TRP ARG GLU HIS ASN ALA SER ARG SEQRES 3 A 71 LYS LEU ASP LEU SER VAL GLU ASP PHE LEU MET LEU ARG SEQRES 4 A 71 HIS ARG ALA ALA LEU GLY ALA ASP ASP ASN ASP ALA VAL SEQRES 5 A 71 LYS PHE ARG SER TRP TRP ASN SER ARG THR LYS MET ALA SEQRES 6 A 71 ASN ASP TYR GLU ASP VAL HELIX 1 1 THR A 20 ARG A 34 1 15 HELIX 2 2 SER A 39 GLY A 53 1 15 HELIX 3 3 ASP A 56 THR A 70 1 15 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1