data_2M5A # _entry.id 2M5A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2M5A RCSB RCSB103226 BMRB 19043 WWPDB D_1000103226 # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 1H0T PDB . unspecified 19043 BMRB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M5A _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-02-19 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Hard, T.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'High-affinity binding to staphylococcal protein A by an engineered dimeric Affibody molecule.' _citation.journal_abbrev 'Protein Eng.Des.Sel.' _citation.journal_volume 26 _citation.page_first 635 _citation.page_last 644 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1741-0126 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23924760 _citation.pdbx_database_id_DOI 10.1093/protein/gzt038 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lindborg, M.' 1 primary 'Dubnovitsky, A.' 2 primary 'Olesen, K.' 3 primary 'Bjorkman, T.' 4 primary 'Abrahmsen, L.' 5 primary 'Feldwisch, J.' 6 primary 'Hard, T.' 7 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Immunoglobulin G-binding protein A' 6648.316 1 ? ? ? ? 2 polymer man ZpA963 6394.071 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'IgG-binding protein A, Staphylococcal protein A' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK VDNKFNKEQQNAFYEILHLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKKLNDAQAPK A ? 2 'polypeptide(L)' no no VDNKFNKETQEASWEIFTLPNLNGRQVAAFISSLLDDPSQSANLLAEAKKLNDAQAPK VDNKFNKETQEASWEIFTLPNLNGRQVAAFISSLLDDPSQSANLLAEAKKLNDAQAPK B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ASP n 1 3 ASN n 1 4 LYS n 1 5 PHE n 1 6 ASN n 1 7 LYS n 1 8 GLU n 1 9 GLN n 1 10 GLN n 1 11 ASN n 1 12 ALA n 1 13 PHE n 1 14 TYR n 1 15 GLU n 1 16 ILE n 1 17 LEU n 1 18 HIS n 1 19 LEU n 1 20 PRO n 1 21 ASN n 1 22 LEU n 1 23 ASN n 1 24 GLU n 1 25 GLU n 1 26 GLN n 1 27 ARG n 1 28 ASN n 1 29 ALA n 1 30 PHE n 1 31 ILE n 1 32 GLN n 1 33 SER n 1 34 LEU n 1 35 LYS n 1 36 ASP n 1 37 ASP n 1 38 PRO n 1 39 SER n 1 40 GLN n 1 41 SER n 1 42 ALA n 1 43 ASN n 1 44 LEU n 1 45 LEU n 1 46 ALA n 1 47 GLU n 1 48 ALA n 1 49 LYS n 1 50 LYS n 1 51 LEU n 1 52 ASN n 1 53 ASP n 1 54 ALA n 1 55 GLN n 1 56 ALA n 1 57 PRO n 1 58 LYS n 2 1 VAL n 2 2 ASP n 2 3 ASN n 2 4 LYS n 2 5 PHE n 2 6 ASN n 2 7 LYS n 2 8 GLU n 2 9 THR n 2 10 GLN n 2 11 GLU n 2 12 ALA n 2 13 SER n 2 14 TRP n 2 15 GLU n 2 16 ILE n 2 17 PHE n 2 18 THR n 2 19 LEU n 2 20 PRO n 2 21 ASN n 2 22 LEU n 2 23 ASN n 2 24 GLY n 2 25 ARG n 2 26 GLN n 2 27 VAL n 2 28 ALA n 2 29 ALA n 2 30 PHE n 2 31 ILE n 2 32 SER n 2 33 SER n 2 34 LEU n 2 35 LEU n 2 36 ASP n 2 37 ASP n 2 38 PRO n 2 39 SER n 2 40 GLN n 2 41 SER n 2 42 ALA n 2 43 ASN n 2 44 LEU n 2 45 LEU n 2 46 ALA n 2 47 GLU n 2 48 ALA n 2 49 LYS n 2 50 LYS n 2 51 LEU n 2 52 ASN n 2 53 ASP n 2 54 ALA n 2 55 GLN n 2 56 ALA n 2 57 PRO n 2 58 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? ? spa ? ? ? ? ? ? 'Staphylococcus aureus' 1280 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 'In-house standard expression vector with T7 promoter' 2 1 sample ? ? ? ? ? ? ? ? ? ? ? ? 'artificial gene' 32630 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 'In-house standard expression vector with T7 promoter' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP SPA_STAAU P38507 1 DNKFNKEQQNAFYEILHLPNLNEEQRNGFIQSLKDDPSQSANLLAEAKKLNDAQAPK 213 ? 2 PDB 2M5A 2M5A 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2M5A A 2 ? 58 ? P38507 213 ? 269 ? 2 58 2 2 2M5A B 1 ? 58 ? 2M5A 101 ? 158 ? 101 158 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2M5A VAL A 1 ? UNP P38507 ? ? 'EXPRESSION TAG' 1 1 1 2M5A ALA A 29 ? UNP P38507 GLY 240 CONFLICT 29 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D HNCO' 1 2 1 '3D HNCA' 1 3 1 '3D HN(CO)CA' 1 4 1 '3D HNCACB' 1 5 1 '3D HN(COCA)CB' 1 6 1 '3D 1H-15N TOCSY' 1 7 1 '3D HCCH-COSY' 1 8 1 '3D HCCH-TOCSY' 1 9 1 '2D 1H-15N HSQC' 1 10 1 '2D 1H-13C HSQC aliphatic' 1 11 1 '2D (HB)CB(CGCDCE)HE' 1 12 1 '3D 1H-15N NOESY' 1 13 1 '3D 1H-13C NOESY aliphatic' 1 14 1 '3D 1H-13C NOESY aromatic' 1 15 1 '2D F1(13C,15N)-filtered, F2(13C)-edited NOESY' 1 16 2 '3D HNCO' 1 17 2 '3D HNCA' 1 18 2 '3D HN(CO)CA' 1 19 2 '3D HNCACB' 1 20 2 '3D HN(COCA)CB' 1 21 2 '3D 1H-15N TOCSY' 1 22 2 '3D HCCH-COSY' 1 23 2 '3D HCCH-TOCSY' 1 24 2 '2D 1H-15N HSQC' 1 25 2 '2D 1H-13C HSQC aliphatic' 1 26 2 '2D (HB)CB(CGCDCE)HE' 1 27 2 '3D 1H-15N NOESY' 1 28 2 '3D 1H-13C NOESY aliphatic' 1 29 2 '3D 1H-13C NOESY aromatic' 1 30 2 '2D F1(13C,15N)-filtered, F2(13C)-edited NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.095 _pdbx_nmr_exptl_sample_conditions.pH 5.6 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.5 to 1 mM [U-99% 13C; U-99% 15N] Z domain, 25% molar excess mM ZpA963, 93% H2O/7% D2O' 1 '93% H2O/7% D2O' '0.5 to 1.0 mM [U-99% 13C; U-99% 15N] ZpA963, 25 5 molar excess mM Z domain, 93% H2O/7% D2O' 2 '93% H2O/7% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Varian INOVA 1 'Varian INOVA' 800 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2M5A _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'back calculated data agree with experimental NOESY spectrum' _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M5A _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M5A _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Varian collection VNMR ? 1 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 2 CCPN 'peak picking' CcPNMR ? 3 CCPN 'chemical shift assignment' CcPNMR ? 4 CCPN 'data analysis' CcPNMR ? 5 'Cheung MS, Maguire ML, Stevens TJ & Broadhurst RW (2010) J Magn Reson 202, 223-233.' 'data analysis' DANGLE ? 6 ;Linge, O'Donoghue and Nilges ; 'structure solution' ARIA ? 7 ;Linge, O'Donoghue and Nilges ; refinement ARIA ? 8 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2M5A _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2M5A _struct.title 'Protein A binding by an engineered Affibody molecule' _struct.pdbx_descriptor 'Immunoglobulin G-binding protein A, ZpA963' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M5A _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'binding protein, protein engineering, protein A, Z domain, Affibody molecule, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 6 ? LEU A 19 ? ASN A 6 LEU A 19 1 ? 14 HELX_P HELX_P2 2 ASN A 23 ? ASP A 37 ? ASN A 23 ASP A 37 1 ? 15 HELX_P HELX_P3 3 PRO A 38 ? SER A 41 ? PRO A 38 SER A 41 5 ? 4 HELX_P HELX_P4 4 ALA A 42 ? ASP A 53 ? ALA A 42 ASP A 53 1 ? 12 HELX_P HELX_P5 5 LYS B 7 ? THR B 18 ? LYS B 107 THR B 118 1 ? 12 HELX_P HELX_P6 6 ASN B 23 ? ASP B 37 ? ASN B 123 ASP B 137 1 ? 15 HELX_P HELX_P7 7 GLN B 40 ? ALA B 56 ? GLN B 140 ALA B 156 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 2M5A _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 ASP 2 2 2 ASP ASP A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 GLN 9 9 9 GLN GLN A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 PHE 13 13 13 PHE PHE A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 PRO 20 20 20 PRO PRO A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 GLN 26 26 26 GLN GLN A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ASN 28 28 28 ASN ASN A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 PHE 30 30 30 PHE PHE A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 SER 33 33 33 SER SER A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 ASP 36 36 36 ASP ASP A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 PRO 38 38 38 PRO PRO A . n A 1 39 SER 39 39 39 SER SER A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 LYS 58 58 58 LYS LYS A . n B 2 1 VAL 1 101 101 VAL VAL B . n B 2 2 ASP 2 102 102 ASP ASP B . n B 2 3 ASN 3 103 103 ASN ASN B . n B 2 4 LYS 4 104 104 LYS LYS B . n B 2 5 PHE 5 105 105 PHE PHE B . n B 2 6 ASN 6 106 106 ASN ASN B . n B 2 7 LYS 7 107 107 LYS LYS B . n B 2 8 GLU 8 108 108 GLU GLU B . n B 2 9 THR 9 109 109 THR THR B . n B 2 10 GLN 10 110 110 GLN GLN B . n B 2 11 GLU 11 111 111 GLU GLU B . n B 2 12 ALA 12 112 112 ALA ALA B . n B 2 13 SER 13 113 113 SER SER B . n B 2 14 TRP 14 114 114 TRP TRP B . n B 2 15 GLU 15 115 115 GLU GLU B . n B 2 16 ILE 16 116 116 ILE ILE B . n B 2 17 PHE 17 117 117 PHE PHE B . n B 2 18 THR 18 118 118 THR THR B . n B 2 19 LEU 19 119 119 LEU LEU B . n B 2 20 PRO 20 120 120 PRO PRO B . n B 2 21 ASN 21 121 121 ASN ASN B . n B 2 22 LEU 22 122 122 LEU LEU B . n B 2 23 ASN 23 123 123 ASN ASN B . n B 2 24 GLY 24 124 124 GLY GLY B . n B 2 25 ARG 25 125 125 ARG ARG B . n B 2 26 GLN 26 126 126 GLN GLN B . n B 2 27 VAL 27 127 127 VAL VAL B . n B 2 28 ALA 28 128 128 ALA ALA B . n B 2 29 ALA 29 129 129 ALA ALA B . n B 2 30 PHE 30 130 130 PHE PHE B . n B 2 31 ILE 31 131 131 ILE ILE B . n B 2 32 SER 32 132 132 SER SER B . n B 2 33 SER 33 133 133 SER SER B . n B 2 34 LEU 34 134 134 LEU LEU B . n B 2 35 LEU 35 135 135 LEU LEU B . n B 2 36 ASP 36 136 136 ASP ASP B . n B 2 37 ASP 37 137 137 ASP ASP B . n B 2 38 PRO 38 138 138 PRO PRO B . n B 2 39 SER 39 139 139 SER SER B . n B 2 40 GLN 40 140 140 GLN GLN B . n B 2 41 SER 41 141 141 SER SER B . n B 2 42 ALA 42 142 142 ALA ALA B . n B 2 43 ASN 43 143 143 ASN ASN B . n B 2 44 LEU 44 144 144 LEU LEU B . n B 2 45 LEU 45 145 145 LEU LEU B . n B 2 46 ALA 46 146 146 ALA ALA B . n B 2 47 GLU 47 147 147 GLU GLU B . n B 2 48 ALA 48 148 148 ALA ALA B . n B 2 49 LYS 49 149 149 LYS LYS B . n B 2 50 LYS 50 150 150 LYS LYS B . n B 2 51 LEU 51 151 151 LEU LEU B . n B 2 52 ASN 52 152 152 ASN ASN B . n B 2 53 ASP 53 153 153 ASP ASP B . n B 2 54 ALA 54 154 154 ALA ALA B . n B 2 55 GLN 55 155 155 GLN GLN B . n B 2 56 ALA 56 156 156 ALA ALA B . n B 2 57 PRO 57 157 157 PRO PRO B . n B 2 58 LYS 58 158 158 LYS LYS B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1640 ? 1 MORE -11 ? 1 'SSA (A^2)' 6840 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-21 2 'Structure model' 1 1 2013-10-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'Z domain-1' 0.5 ? mM '[U-99% 13C; U-99% 15N]' 1 ZpA963-2 0.25 ? mM ? 1 ZpA963-3 0.5 ? mM '[U-99% 13C; U-99% 15N]' 2 'Z domain-4' 0.25 ? mM ? 2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 HH21 A ARG 27 ? ? HD22 A ASN 28 ? ? 1.34 2 3 HH A TYR 14 ? ? HB2 B TRP 114 ? ? 1.32 3 5 HH21 A ARG 27 ? ? HD22 A ASN 28 ? ? 1.32 4 6 HH21 A ARG 27 ? ? HD22 A ASN 28 ? ? 1.35 5 12 HH21 A ARG 27 ? ? HD22 A ASN 28 ? ? 1.33 6 14 HH A TYR 14 ? ? HB2 B TRP 114 ? ? 1.32 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 5 ? ? 65.73 74.39 2 1 ASN A 6 ? ? -62.96 -173.75 3 1 PRO A 57 ? ? -71.36 -164.63 4 1 ASN B 106 ? ? -124.58 -67.91 5 1 LYS B 107 ? ? -135.27 -60.12 6 1 PRO B 138 ? ? -58.68 -5.16 7 2 ASN A 6 ? ? -61.75 -169.60 8 2 PRO A 57 ? ? -90.66 -156.31 9 2 ASN B 106 ? ? -114.01 -79.22 10 2 LYS B 107 ? ? -125.09 -60.28 11 2 ASP B 137 ? ? -151.18 70.55 12 3 ASN A 3 ? ? -164.79 101.83 13 3 LYS A 4 ? ? -59.62 -3.41 14 3 PHE A 5 ? ? 67.88 82.48 15 3 ASN A 6 ? ? -69.83 -173.57 16 3 PRO A 57 ? ? -72.59 -166.46 17 3 LYS B 104 ? ? -95.20 -75.44 18 3 ASN B 106 ? ? -139.05 -69.26 19 3 LYS B 107 ? ? -142.06 -62.68 20 3 ASN B 123 ? ? -77.09 -169.60 21 3 ASP B 137 ? ? -166.23 76.94 22 3 PRO B 138 ? ? -58.85 -8.46 23 4 PHE A 5 ? ? 67.69 80.24 24 4 ASN A 6 ? ? -74.80 -169.43 25 4 ASN B 106 ? ? -140.60 -68.14 26 4 LYS B 107 ? ? -137.98 -65.32 27 4 LEU B 119 ? ? -44.49 103.10 28 4 ASP B 137 ? ? -154.46 71.73 29 5 ASP A 2 ? ? 57.85 -164.73 30 5 ASN A 3 ? ? 59.07 15.87 31 5 ASN A 6 ? ? -66.37 -170.68 32 5 LYS B 104 ? ? -76.17 -72.32 33 5 ASN B 106 ? ? -137.42 -72.74 34 5 LYS B 107 ? ? -121.47 -68.14 35 5 ASP B 137 ? ? -161.63 75.60 36 5 PRO B 138 ? ? -59.74 1.50 37 5 PRO B 157 ? ? -55.46 -73.52 38 6 ASP A 2 ? ? -95.57 45.94 39 6 PHE A 5 ? ? 65.99 74.62 40 6 ASN A 6 ? ? -69.44 -171.26 41 6 PRO A 57 ? ? -76.69 -165.01 42 6 ASN B 106 ? ? -47.36 -71.74 43 6 LYS B 107 ? ? -137.69 -58.76 44 6 GLU B 108 ? ? -38.17 -37.21 45 6 PRO B 138 ? ? -58.98 -2.25 46 6 PRO B 157 ? ? -73.56 -75.47 47 7 ASN A 3 ? ? -140.90 -73.61 48 7 PHE A 5 ? ? -91.49 48.64 49 7 ASN A 6 ? ? -61.98 -170.42 50 7 PRO A 57 ? ? -68.84 -162.98 51 7 LYS B 104 ? ? -87.72 -72.91 52 7 ASN B 106 ? ? -138.09 -69.85 53 7 LYS B 107 ? ? -136.64 -68.72 54 7 ASN B 123 ? ? -74.53 -168.98 55 7 ASP B 137 ? ? -151.96 71.01 56 7 PRO B 138 ? ? -58.79 -7.65 57 8 ASP A 2 ? ? -148.98 42.99 58 8 ASN A 3 ? ? -161.13 -61.08 59 8 ASN A 6 ? ? -63.23 -172.04 60 8 ASP A 37 ? ? -154.52 84.11 61 8 PRO A 57 ? ? -54.04 -81.03 62 8 ASN B 106 ? ? -54.01 -76.98 63 8 LYS B 107 ? ? -124.25 -66.12 64 8 GLU B 108 ? ? -38.37 -29.74 65 8 ASP B 137 ? ? -165.55 77.75 66 8 PRO B 138 ? ? -56.70 -7.30 67 9 ASP A 2 ? ? -89.06 36.33 68 9 PHE A 5 ? ? 65.38 70.74 69 9 ASN A 6 ? ? -65.23 -170.84 70 9 PRO A 57 ? ? -63.86 -160.49 71 9 PHE B 105 ? ? -148.40 -146.83 72 9 ASN B 106 ? ? -151.13 -81.61 73 9 LYS B 107 ? ? -137.82 -62.64 74 9 LEU B 119 ? ? -45.13 102.76 75 9 ASP B 137 ? ? -165.23 76.72 76 10 ASP A 2 ? ? -111.25 54.60 77 10 LYS A 4 ? ? -47.86 -14.52 78 10 PHE A 5 ? ? 66.25 73.00 79 10 PRO A 57 ? ? -71.45 -163.61 80 10 ASN B 106 ? ? -46.65 -77.56 81 10 LYS B 107 ? ? -132.51 -57.44 82 10 GLU B 108 ? ? -38.54 -38.52 83 10 ASP B 137 ? ? -168.46 78.43 84 10 PRO B 138 ? ? -59.50 1.54 85 10 PRO B 157 ? ? -74.95 -109.67 86 11 ASN A 3 ? ? -174.41 78.82 87 11 ASN A 6 ? ? -64.23 -167.63 88 11 LYS A 7 ? ? -60.94 -70.18 89 11 PRO A 57 ? ? -67.19 -159.43 90 11 LYS B 104 ? ? -74.60 -71.78 91 11 ASN B 106 ? ? -131.42 -77.14 92 11 LYS B 107 ? ? -127.33 -68.35 93 11 ASP B 137 ? ? -164.79 76.84 94 12 ASN A 3 ? ? -169.77 -57.64 95 12 ASN A 6 ? ? -68.35 -172.47 96 12 PRO A 57 ? ? -66.40 -162.75 97 12 ASN B 106 ? ? -122.94 -71.31 98 12 LYS B 107 ? ? -130.12 -61.84 99 12 ASP B 137 ? ? -160.30 75.06 100 12 PRO B 138 ? ? -55.13 -9.30 101 12 PRO B 157 ? ? -56.95 -70.92 102 13 ASP A 2 ? ? -160.08 -45.21 103 13 ASN A 3 ? ? -162.13 112.42 104 13 LYS A 4 ? ? -65.69 0.48 105 13 PHE A 5 ? ? 67.81 93.95 106 13 ASN A 6 ? ? -64.43 -177.57 107 13 PRO A 57 ? ? -64.25 -164.79 108 13 ASN B 106 ? ? -133.08 -67.13 109 13 LYS B 107 ? ? -136.39 -64.63 110 14 ASP A 2 ? ? -142.63 -66.07 111 14 PHE A 5 ? ? 60.07 72.17 112 14 ASN A 6 ? ? -61.83 -177.76 113 14 PRO A 57 ? ? -68.30 -162.64 114 14 ASN B 106 ? ? -120.42 -68.28 115 14 LYS B 107 ? ? -131.44 -60.22 116 14 ASP B 137 ? ? -151.31 71.07 117 14 PRO B 138 ? ? -57.40 -6.90 118 15 PHE A 5 ? ? 55.56 76.19 119 15 ASN A 6 ? ? -59.70 -171.18 120 15 PRO A 57 ? ? -72.74 -163.78 121 15 LYS B 104 ? ? -78.70 -74.97 122 15 ASN B 106 ? ? -143.31 -71.84 123 15 LYS B 107 ? ? -136.78 -65.57 124 15 PRO B 157 ? ? -55.28 -78.61 125 16 PHE A 5 ? ? 63.43 84.59 126 16 ASN A 6 ? ? -76.52 -168.65 127 16 ASN B 106 ? ? -143.02 -67.58 128 16 LYS B 107 ? ? -139.92 -65.51 129 16 ASP B 137 ? ? -164.54 76.22 130 16 PRO B 138 ? ? -59.18 -7.18 131 17 ASN A 3 ? ? 57.85 16.54 132 17 ASN A 6 ? ? -67.23 -169.61 133 17 PRO A 57 ? ? -65.26 -163.13 134 17 ASN B 106 ? ? -119.16 -70.03 135 17 LYS B 107 ? ? -129.48 -64.71 136 17 LEU B 119 ? ? -46.86 103.80 137 17 ASP B 137 ? ? -151.74 70.30 138 18 ASN A 3 ? ? -168.91 -54.29 139 18 PHE A 5 ? ? -108.77 78.43 140 18 ASN A 6 ? ? -71.84 -167.38 141 18 PRO A 57 ? ? -67.69 -161.40 142 18 ASN B 106 ? ? -94.37 -114.86 143 18 GLU B 108 ? ? -38.81 -38.64 144 18 ASP B 137 ? ? -161.92 75.76 145 18 PRO B 157 ? ? -73.38 -109.48 146 19 PHE A 5 ? ? 64.17 64.56 147 19 ASN A 6 ? ? -68.33 -170.03 148 19 PRO A 57 ? ? -78.36 -164.57 149 19 LYS B 104 ? ? -60.13 -70.94 150 19 LYS B 107 ? ? -135.54 -63.55 151 19 PRO B 138 ? ? -58.29 -4.08 152 19 ALA B 156 ? ? -49.52 155.65 153 19 PRO B 157 ? ? -54.72 -72.89 154 20 ASN A 3 ? ? -163.37 -111.23 155 20 PHE A 5 ? ? 63.16 74.97 156 20 ASN A 6 ? ? -58.34 179.53 157 20 ASP A 37 ? ? -154.47 81.50 158 20 PRO A 57 ? ? -70.47 -165.98 159 20 LYS B 104 ? ? -70.51 -74.20 160 20 ASN B 106 ? ? -135.53 -71.14 161 20 LYS B 107 ? ? -133.57 -65.65 162 20 ASN B 123 ? ? -76.02 -169.39 163 20 ASP B 137 ? ? -161.14 75.47 164 20 PRO B 157 ? ? -53.38 -71.17 #