HEADER MEMBRANE PROTEIN 25-FEB-13 2M5I TITLE NMR STRUCTURES OF HUMAN APOPTOTIC PROTEIN TBID IN LPPG MICELLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BH3-INTERACTING DOMAIN DEATH AGONIST; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P22 BID, BID, BH3-INTERACTING DOMAIN DEATH AGONIST P15, P15 COMPND 5 BID, BH3-INTERACTING DOMAIN DEATH AGONIST P13, P13 BID, BH3- COMPND 6 INTERACTING DOMAIN DEATH AGONIST P11, P11 BID; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TBID, APOPTOSIS, MEMBRANE PROTEIN, LPPG MICELLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.WANG,N.TJANDRA REVDAT 3 14-JUN-23 2M5I 1 REMARK REVDAT 2 01-JAN-14 2M5I 1 JRNL REVDAT 1 13-NOV-13 2M5I 0 JRNL AUTH Y.WANG,N.TJANDRA JRNL TITL STRUCTURAL INSIGHTS OF TBID, THE CASPASE-8-ACTIVATED BID, JRNL TITL 2 AND ITS BH3 DOMAIN. JRNL REF J.BIOL.CHEM. V. 288 35840 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24158446 JRNL DOI 10.1074/JBC.M113.503680 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2M5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-13. REMARK 100 THE DEPOSITION ID IS D_1000103234. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-15N] TBID IN LPPG REMARK 210 MICELLE, 0.8 MM [U-13C; U-15N] REMARK 210 TBID IN LPPG MICELLE, 0.8 MM [U- REMARK 210 100% 15N; U-80% 2H] TBID IN LPPG REMARK 210 MICELLE, 90% H2O/10% D2O; 1.0 MM REMARK 210 [U-100% 13C; U-100% 15N] TBID IN REMARK 210 LPPG MICELLE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HNCO; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D 1H-15N NOESY; REMARK 210 4D HCHC-NOESY; T1; T2 REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 147 H LEU A 151 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 64 -87.79 49.11 REMARK 500 1 SER A 65 134.39 59.76 REMARK 500 1 ARG A 68 42.51 -80.78 REMARK 500 1 GLU A 73 90.80 -41.49 REMARK 500 1 ALA A 74 -31.46 -175.21 REMARK 500 1 SER A 78 86.50 60.38 REMARK 500 1 ARG A 99 38.44 -155.79 REMARK 500 1 SER A 100 -24.48 -144.22 REMARK 500 1 LEU A 105 3.45 54.93 REMARK 500 1 ARG A 118 70.27 -64.54 REMARK 500 1 GLU A 120 -158.98 -141.16 REMARK 500 1 GLU A 121 165.86 55.58 REMARK 500 1 ASP A 122 -38.49 69.34 REMARK 500 1 ASP A 126 -71.23 -64.30 REMARK 500 1 ALA A 137 72.12 -107.21 REMARK 500 1 ARG A 140 157.00 55.80 REMARK 500 1 MET A 142 -20.10 65.32 REMARK 500 1 THR A 163 93.55 -29.39 REMARK 500 1 LEU A 166 -59.24 67.48 REMARK 500 1 ASN A 181 -55.59 70.97 REMARK 500 2 SER A 64 89.77 53.55 REMARK 500 2 SER A 67 46.60 -141.96 REMARK 500 2 ARG A 68 87.01 -156.14 REMARK 500 2 ILE A 72 33.44 35.56 REMARK 500 2 GLU A 73 -59.07 -143.42 REMARK 500 2 ASP A 75 -130.04 -58.87 REMARK 500 2 SER A 76 -67.53 63.38 REMARK 500 2 GLN A 79 -60.16 68.22 REMARK 500 2 MET A 97 60.20 -69.04 REMARK 500 2 ASP A 98 42.53 -169.72 REMARK 500 2 ARG A 99 -38.38 -131.84 REMARK 500 2 PRO A 102 98.53 -36.72 REMARK 500 2 PRO A 103 -82.22 -83.67 REMARK 500 2 ASN A 115 -17.55 -44.92 REMARK 500 2 SER A 117 -137.56 -163.64 REMARK 500 2 ARG A 118 -78.93 57.17 REMARK 500 2 GLU A 120 9.06 59.44 REMARK 500 2 ASP A 122 -16.49 -47.03 REMARK 500 2 ASN A 124 -73.24 -120.41 REMARK 500 2 ARG A 125 85.23 -51.84 REMARK 500 2 ASP A 126 -102.15 -173.43 REMARK 500 2 PRO A 139 81.69 -52.70 REMARK 500 2 MET A 142 -71.48 -160.46 REMARK 500 2 SER A 161 -165.57 -72.04 REMARK 500 2 HIS A 162 89.10 167.38 REMARK 500 2 ASN A 181 -57.95 62.16 REMARK 500 2 ALA A 190 112.44 54.61 REMARK 500 3 SER A 67 76.11 -102.25 REMARK 500 3 ILE A 72 166.04 54.34 REMARK 500 3 GLU A 73 -34.18 79.77 REMARK 500 REMARK 500 THIS ENTRY HAS 416 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19054 RELATED DB: BMRB DBREF 2M5I A 61 195 UNP P55957 BID_HUMAN 61 195 SEQRES 1 A 135 GLY ASN ARG SER SER HIS SER ARG LEU GLY ARG ILE GLU SEQRES 2 A 135 ALA ASP SER GLU SER GLN GLU ASP ILE ILE ARG ASN ILE SEQRES 3 A 135 ALA ARG HIS LEU ALA GLN VAL GLY ASP SER MET ASP ARG SEQRES 4 A 135 SER ILE PRO PRO GLY LEU VAL ASN GLY LEU ALA LEU GLN SEQRES 5 A 135 LEU ARG ASN THR SER ARG SER GLU GLU ASP ARG ASN ARG SEQRES 6 A 135 ASP LEU ALA THR ALA LEU GLU GLN LEU LEU GLN ALA TYR SEQRES 7 A 135 PRO ARG ASP MET GLU LYS GLU LYS THR MET LEU VAL LEU SEQRES 8 A 135 ALA LEU LEU LEU ALA LYS LYS VAL ALA SER HIS THR PRO SEQRES 9 A 135 SER LEU LEU ARG ASP VAL PHE HIS THR THR VAL ASN PHE SEQRES 10 A 135 ILE ASN GLN ASN LEU ARG THR TYR VAL ARG SER LEU ALA SEQRES 11 A 135 ARG ASN GLY MET ASP HELIX 1 1 SER A 78 SER A 96 1 19 HELIX 2 2 MET A 97 ARG A 99 5 3 HELIX 3 3 LEU A 105 SER A 117 1 13 HELIX 4 4 ASN A 124 ALA A 137 1 14 HELIX 5 5 MET A 142 SER A 161 1 20 HELIX 6 6 LEU A 166 ALA A 190 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1