data_2M5K # _entry.id 2M5K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.390 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2M5K pdb_00002m5k 10.2210/pdb2m5k/pdb RCSB RCSB103236 ? ? BMRB 19058 ? ? WWPDB D_1000103236 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-04 2 'Structure model' 1 1 2018-07-18 3 'Structure model' 1 2 2020-02-26 4 'Structure model' 1 3 2023-06-14 5 'Structure model' 1 4 2024-04-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Data collection' 3 3 'Structure model' Other 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' 8 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' em_single_particle_entity 2 2 'Structure model' em_software 3 3 'Structure model' pdbx_database_status 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_struct_oper_list 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_em_software.image_processing_id' 2 3 'Structure model' '_pdbx_database_status.status_code_cs' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 6 4 'Structure model' '_pdbx_struct_oper_list.name' 7 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 8 4 'Structure model' '_pdbx_struct_oper_list.type' 9 5 'Structure model' '_pdbx_database_status.status_code_mr' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M5K _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-02-27 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19058 BMRB unspecified . EMD-5590 EMDB 'associated EM volume' . EMD-2323 EMDB 'other EM volume' . EMD-2324 EMDB 'other EM volume' . 3ZPK PDB unspecified . 2M5M PDB unspecified . 2M5N PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fitzpatrick, A.W.P.' 1 'Debelouchina, G.T.' 2 'Bayro, M.J.' 3 'Clare, D.K.' 4 'Caporini, M.A.' 5 'Bajaj, V.S.' 6 'Jaroniec, C.P.' 7 'Wang, L.' 8 'Ladizhansky, V.' 9 'Muller, S.' 10 'MacPhee, C.E.' 11 'Waudby, C.A.' 12 'Mott, H.R.' 13 'de Simone, A.' 14 'Knowles, T.P.J.' 15 'Saibil, H.R.' 16 'Vendruscolo, M.' 17 'Orlova, E.V.' 18 'Griffin, R.G.' 19 'Dobson, C.M.' 20 # _citation.id primary _citation.title 'Atomic structure and hierarchical assembly of a cross-beta amyloid fibril.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 5468 _citation.page_last 5473 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23513222 _citation.pdbx_database_id_DOI 10.1073/pnas.1219476110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fitzpatrick, A.W.' 1 ? primary 'Debelouchina, G.T.' 2 ? primary 'Bayro, M.J.' 3 ? primary 'Clare, D.K.' 4 ? primary 'Caporini, M.A.' 5 ? primary 'Bajaj, V.S.' 6 ? primary 'Jaroniec, C.P.' 7 ? primary 'Wang, L.' 8 ? primary 'Ladizhansky, V.' 9 ? primary 'Muller, S.A.' 10 ? primary 'MacPhee, C.E.' 11 ? primary 'Waudby, C.A.' 12 ? primary 'Mott, H.R.' 13 ? primary 'De Simone, A.' 14 ? primary 'Knowles, T.P.' 15 ? primary 'Saibil, H.R.' 16 ? primary 'Vendruscolo, M.' 17 ? primary 'Orlova, E.V.' 18 ? primary 'Griffin, R.G.' 19 ? primary 'Dobson, C.M.' 20 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Transthyretin _entity.formula_weight 1198.366 _entity.pdbx_number_of_molecules 8 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residues 125-135' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Prealbumin, TBPA' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code YTIAALLSPYS _entity_poly.pdbx_seq_one_letter_code_can YTIAALLSPYS _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 THR n 1 3 ILE n 1 4 ALA n 1 5 ALA n 1 6 LEU n 1 7 LEU n 1 8 SER n 1 9 PRO n 1 10 TYR n 1 11 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Rattus norvegicus' _pdbx_entity_src_syn.organism_common_name rat _pdbx_entity_src_syn.ncbi_taxonomy_id 10116 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 1 1 TYR TYR A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 SER 11 11 11 SER SER A . n B 1 1 TYR 1 1 1 TYR TYR B . n B 1 2 THR 2 2 2 THR THR B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 SER 8 8 8 SER SER B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 TYR 10 10 10 TYR TYR B . n B 1 11 SER 11 11 11 SER SER B . n C 1 1 TYR 1 1 1 TYR TYR C . n C 1 2 THR 2 2 2 THR THR C . n C 1 3 ILE 3 3 3 ILE ILE C . n C 1 4 ALA 4 4 4 ALA ALA C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 LEU 6 6 6 LEU LEU C . n C 1 7 LEU 7 7 7 LEU LEU C . n C 1 8 SER 8 8 8 SER SER C . n C 1 9 PRO 9 9 9 PRO PRO C . n C 1 10 TYR 10 10 10 TYR TYR C . n C 1 11 SER 11 11 11 SER SER C . n D 1 1 TYR 1 1 1 TYR TYR D . n D 1 2 THR 2 2 2 THR THR D . n D 1 3 ILE 3 3 3 ILE ILE D . n D 1 4 ALA 4 4 4 ALA ALA D . n D 1 5 ALA 5 5 5 ALA ALA D . n D 1 6 LEU 6 6 6 LEU LEU D . n D 1 7 LEU 7 7 7 LEU LEU D . n D 1 8 SER 8 8 8 SER SER D . n D 1 9 PRO 9 9 9 PRO PRO D . n D 1 10 TYR 10 10 10 TYR TYR D . n D 1 11 SER 11 11 11 SER SER D . n E 1 1 TYR 1 1 1 TYR TYR E . n E 1 2 THR 2 2 2 THR THR E . n E 1 3 ILE 3 3 3 ILE ILE E . n E 1 4 ALA 4 4 4 ALA ALA E . n E 1 5 ALA 5 5 5 ALA ALA E . n E 1 6 LEU 6 6 6 LEU LEU E . n E 1 7 LEU 7 7 7 LEU LEU E . n E 1 8 SER 8 8 8 SER SER E . n E 1 9 PRO 9 9 9 PRO PRO E . n E 1 10 TYR 10 10 10 TYR TYR E . n E 1 11 SER 11 11 11 SER SER E . n F 1 1 TYR 1 1 1 TYR TYR F . n F 1 2 THR 2 2 2 THR THR F . n F 1 3 ILE 3 3 3 ILE ILE F . n F 1 4 ALA 4 4 4 ALA ALA F . n F 1 5 ALA 5 5 5 ALA ALA F . n F 1 6 LEU 6 6 6 LEU LEU F . n F 1 7 LEU 7 7 7 LEU LEU F . n F 1 8 SER 8 8 8 SER SER F . n F 1 9 PRO 9 9 9 PRO PRO F . n F 1 10 TYR 10 10 10 TYR TYR F . n F 1 11 SER 11 11 11 SER SER F . n G 1 1 TYR 1 1 1 TYR TYR G . n G 1 2 THR 2 2 2 THR THR G . n G 1 3 ILE 3 3 3 ILE ILE G . n G 1 4 ALA 4 4 4 ALA ALA G . n G 1 5 ALA 5 5 5 ALA ALA G . n G 1 6 LEU 6 6 6 LEU LEU G . n G 1 7 LEU 7 7 7 LEU LEU G . n G 1 8 SER 8 8 8 SER SER G . n G 1 9 PRO 9 9 9 PRO PRO G . n G 1 10 TYR 10 10 10 TYR TYR G . n G 1 11 SER 11 11 11 SER SER G . n H 1 1 TYR 1 1 1 TYR TYR H . n H 1 2 THR 2 2 2 THR THR H . n H 1 3 ILE 3 3 3 ILE ILE H . n H 1 4 ALA 4 4 4 ALA ALA H . n H 1 5 ALA 5 5 5 ALA ALA H . n H 1 6 LEU 6 6 6 LEU LEU H . n H 1 7 LEU 7 7 7 LEU LEU H . n H 1 8 SER 8 8 8 SER SER H . n H 1 9 PRO 9 9 9 PRO PRO H . n H 1 10 TYR 10 10 10 TYR TYR H . n H 1 11 SER 11 11 11 SER SER H . n # loop_ _exptl.absorpt_coefficient_mu _exptl.absorpt_correction_T_max _exptl.absorpt_correction_T_min _exptl.absorpt_correction_type _exptl.absorpt_process_details _exptl.crystals_number _exptl.details _exptl.entry_id _exptl.method _exptl.method_details ? ? ? ? ? ? ? 2M5K 'SOLID-STATE NMR' ? ? ? ? ? ? ? ? 2M5K 'ELECTRON MICROSCOPY' ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 680 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 680 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 2M5K _struct.title 'Atomic-resolution structure of a doublet cross-beta amyloid fibril' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M5K _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' _struct_keywords.text 'amyloid fibril, cross-beta structure, PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TTHY_RAT _struct_ref.pdbx_db_accession P02767 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code YTIAALLSPYS _struct_ref.pdbx_align_begin 125 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2M5K A 1 ? 11 ? P02767 125 ? 135 ? 1 11 2 1 2M5K B 1 ? 11 ? P02767 125 ? 135 ? 1 11 3 1 2M5K C 1 ? 11 ? P02767 125 ? 135 ? 1 11 4 1 2M5K D 1 ? 11 ? P02767 125 ? 135 ? 1 11 5 1 2M5K E 1 ? 11 ? P02767 125 ? 135 ? 1 11 6 1 2M5K F 1 ? 11 ? P02767 125 ? 135 ? 1 11 7 1 2M5K G 1 ? 11 ? P02767 125 ? 135 ? 1 11 8 1 2M5K H 1 ? 11 ? P02767 125 ? 135 ? 1 11 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? helical 114 2 'helical asymmetric unit' ? octameric 8 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-114)' A,B,C,D,E,F,G,H 2 1 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'helical symmetry operation' ? ? 0.99989000 0.01482000 0.00002000 -0.02575 -0.01482000 0.99989000 0.00000000 0.00037 -0.00002000 0.00000000 1.00000000 4.66992 3 'helical symmetry operation' ? ? 0.99956000 0.02963000 0.00005000 -0.05127 -0.02963000 0.99956000 0.00000000 0.00085 -0.00005000 -0.00001000 1.00000000 9.33995 4 'helical symmetry operation' ? ? 0.99901000 0.04444000 0.00007000 -0.07658 -0.04444000 0.99901000 0.00001000 0.00169 -0.00007000 -0.00001000 1.00000000 14.00984 5 'helical symmetry operation' ? ? 0.99824000 0.05924000 0.00009000 -0.10211 -0.05924000 0.99824000 0.00001000 0.00302 -0.00009000 -0.00001000 1.00000000 18.68005 6 'helical symmetry operation' ? ? 0.99726000 0.07402000 0.00012000 -0.12686 -0.07402000 0.99726000 0.00001000 0.00469 -0.00011000 -0.00001000 1.00000000 23.35008 7 'helical symmetry operation' ? ? 0.99605000 0.08879000 0.00014000 -0.15232 -0.08879000 0.99605000 0.00001000 0.00721 -0.00014000 -0.00002000 1.00000000 28.02016 8 'helical symmetry operation' ? ? 0.99463000 0.10354000 0.00016000 -0.17731 -0.10354000 0.99463000 0.00001000 0.00969 -0.00016000 -0.00002000 1.00000000 32.69011 9 'helical symmetry operation' ? ? 0.99298000 0.11827000 0.00018000 -0.20195 -0.11827000 0.99298000 0.00001000 0.01246 -0.00018000 -0.00003000 1.00000000 37.36003 10 'helical symmetry operation' ? ? 0.99112000 0.13297000 0.00020000 -0.22671 -0.13297000 0.99112000 0.00001000 0.01572 -0.00020000 -0.00003000 1.00000000 42.03017 11 'helical symmetry operation' ? ? 0.98904000 0.14764000 0.00023000 -0.25107 -0.14764000 0.98904000 0.00001000 0.01914 -0.00022000 -0.00004000 1.00000000 46.70016 12 'helical symmetry operation' ? ? 0.98675000 0.16228000 0.00025000 -0.27524 -0.16228000 0.98675000 0.00000000 0.02317 -0.00025000 -0.00004000 1.00000000 51.37007 13 'helical symmetry operation' ? ? 0.98423000 0.17688000 0.00027000 -0.29943 -0.17688000 0.98423000 0.00000000 0.02793 -0.00027000 -0.00005000 1.00000000 56.04016 14 'helical symmetry operation' ? ? 0.98150000 0.19144000 0.00030000 -0.32327 -0.19144000 0.98150000 0.00000000 0.03238 -0.00029000 -0.00006000 1.00000000 60.71011 15 'helical symmetry operation' ? ? 0.97856000 0.20597000 0.00032000 -0.34723 -0.20597000 0.97856000 0.00000000 0.03726 -0.00031000 -0.00006000 1.00000000 65.38011 16 'helical symmetry operation' ? ? 0.97540000 0.22044000 0.00034000 -0.37072 -0.22044000 0.97540000 0.00000000 0.04284 -0.00033000 -0.00007000 1.00000000 70.05002 17 'helical symmetry operation' ? ? 0.97203000 0.23487000 0.00036000 -0.39432 -0.23487000 0.97203000 -0.00001000 0.04893 -0.00036000 -0.00008000 1.00000000 74.72005 18 'helical symmetry operation' ? ? 0.96844000 0.24925000 0.00039000 -0.41740 -0.24925000 0.96844000 -0.00001000 0.05498 -0.00038000 -0.00009000 1.00000000 79.39017 19 'helical symmetry operation' ? ? 0.96464000 0.26357000 0.00041000 -0.44015 -0.26357000 0.96464000 -0.00001000 0.06135 -0.00040000 -0.00009000 1.00000000 84.06023 20 'helical symmetry operation' ? ? 0.96063000 0.27783000 0.00043000 -0.46304 -0.27783000 0.96063000 -0.00002000 0.06792 -0.00042000 -0.00010000 1.00000000 88.73029 21 'helical symmetry operation' ? ? 0.95641000 0.29204000 0.00046000 -0.48563 -0.29204000 0.95641000 -0.00002000 0.07519 -0.00044000 -0.00011000 1.00000000 93.40042 22 'helical symmetry operation' ? ? 0.95197000 0.30618000 0.00048000 -0.50794 -0.30618000 0.95197000 -0.00003000 0.08295 -0.00046000 -0.00012000 1.00000000 98.07043 23 'helical symmetry operation' ? ? 0.94733000 0.32025000 0.00050000 -0.52997 -0.32025000 0.94733000 -0.00003000 0.09085 -0.00048000 -0.00013000 1.00000000 102.74022 24 'helical symmetry operation' ? ? 0.94248000 0.33425000 0.00052000 -0.55237 -0.33425000 0.94248000 -0.00004000 0.09909 -0.00050000 -0.00014000 1.00000000 107.41017 25 'helical symmetry operation' ? ? 0.93743000 0.34818000 0.00054000 -0.57373 -0.34818000 0.93743000 -0.00004000 0.10757 -0.00053000 -0.00015000 1.00000000 112.08015 26 'helical symmetry operation' ? ? 0.93217000 0.36203000 0.00057000 -0.59528 -0.36203000 0.93217000 -0.00005000 0.11653 -0.00055000 -0.00016000 1.00000000 116.75044 27 'helical symmetry operation' ? ? 0.92670000 0.37580000 0.00059000 -0.61632 -0.37580000 0.92670000 -0.00006000 0.12544 -0.00057000 -0.00017000 1.00000000 121.42029 28 'helical symmetry operation' ? ? 0.92103000 0.38949000 0.00061000 -0.63729 -0.38949000 0.92103000 -0.00006000 0.13506 -0.00059000 -0.00018000 1.00000000 126.09050 29 'helical symmetry operation' ? ? 0.91516000 0.40310000 0.00063000 -0.65805 -0.40310000 0.91516000 -0.00007000 0.14501 -0.00061000 -0.00019000 1.00000000 130.76045 30 'helical symmetry operation' ? ? 0.90908000 0.41661000 0.00065000 -0.67845 -0.41661000 0.90908000 -0.00008000 0.15507 -0.00063000 -0.00020000 1.00000000 135.43047 31 'helical symmetry operation' ? ? 0.90281000 0.43004000 0.00068000 -0.69869 -0.43004000 0.90281000 -0.00008000 0.16590 -0.00065000 -0.00021000 1.00000000 140.10056 32 'helical symmetry operation' ? ? 0.89634000 0.44337000 0.00070000 -0.71863 -0.44337000 0.89634000 -0.00009000 0.17645 -0.00067000 -0.00022000 1.00000000 144.77069 33 'helical symmetry operation' ? ? 0.88967000 0.45660000 0.00072000 -0.73824 -0.45660000 0.88967000 -0.00010000 0.18744 -0.00069000 -0.00024000 1.00000000 149.44046 34 'helical symmetry operation' ? ? 0.88281000 0.46973000 0.00074000 -0.75762 -0.46973000 0.88281000 -0.00011000 0.19859 -0.00071000 -0.00025000 1.00000000 154.11035 35 'helical symmetry operation' ? ? 0.87575000 0.48276000 0.00076000 -0.77681 -0.48276000 0.87575000 -0.00012000 0.21033 -0.00072000 -0.00026000 1.00000000 158.78062 36 'helical symmetry operation' ? ? 0.86850000 0.49569000 0.00078000 -0.79553 -0.49569000 0.86850000 -0.00013000 0.22229 -0.00074000 -0.00027000 1.00000000 163.45056 37 'helical symmetry operation' ? ? 0.86106000 0.50850000 0.00080000 -0.81416 -0.50850000 0.86106000 -0.00014000 0.23484 -0.00076000 -0.00029000 1.00000000 168.12054 38 'helical symmetry operation' ? ? 0.85343000 0.52120000 0.00082000 -0.83240 -0.52120000 0.85343000 -0.00015000 0.24674 -0.00078000 -0.00030000 1.00000000 172.79066 39 'helical symmetry operation' ? ? 0.84562000 0.53379000 0.00084000 -0.85038 -0.53379000 0.84562000 -0.00016000 0.25966 -0.00080000 -0.00031000 1.00000000 177.46075 40 'helical symmetry operation' ? ? 0.83761000 0.54626000 0.00086000 -0.86797 -0.54626000 0.83761000 -0.00017000 0.27325 -0.00082000 -0.00033000 1.00000000 182.13071 41 'helical symmetry operation' ? ? 0.82943000 0.55861000 0.00088000 -0.88547 -0.55861000 0.82943000 -0.00018000 0.28642 -0.00083000 -0.00034000 1.00000000 186.80072 42 'helical symmetry operation' ? ? 0.82106000 0.57084000 0.00090000 -0.90246 -0.57084000 0.82106000 -0.00019000 0.30022 -0.00085000 -0.00036000 1.00000000 191.47076 43 'helical symmetry operation' ? ? 0.81251000 0.58294000 0.00092000 -0.91910 -0.58294000 0.81251000 -0.00020000 0.31415 -0.00087000 -0.00037000 1.00000000 196.14081 44 'helical symmetry operation' ? ? 0.80378000 0.59492000 0.00094000 -0.93581 -0.59492000 0.80378000 -0.00022000 0.32774 -0.00089000 -0.00039000 1.00000000 200.81081 45 'helical symmetry operation' ? ? 0.79488000 0.60677000 0.00096000 -0.95177 -0.60677000 0.79488000 -0.00023000 0.34260 -0.00090000 -0.00040000 1.00000000 205.48085 46 'helical symmetry operation' ? ? 0.78580000 0.61848000 0.00098000 -0.96759 -0.61848000 0.78580000 -0.00024000 0.35711 -0.00092000 -0.00042000 1.00000000 210.15086 47 'helical symmetry operation' ? ? 0.77655000 0.63005000 0.00100000 -0.98295 -0.63005000 0.77655000 -0.00025000 0.37239 -0.00094000 -0.00044000 1.00000000 214.82095 48 'helical symmetry operation' ? ? 0.76713000 0.64149000 0.00102000 -0.99817 -0.64149000 0.76713000 -0.00026000 0.38740 -0.00095000 -0.00045000 1.00000000 219.49094 49 'helical symmetry operation' ? ? 0.75754000 0.65279000 0.00104000 -1.01306 -0.65279000 0.75754000 -0.00028000 0.40253 -0.00097000 -0.00047000 1.00000000 224.16101 50 'helical symmetry operation' ? ? 0.74779000 0.66394000 0.00106000 -1.02760 -0.66394000 0.74779000 -0.00029000 0.41792 -0.00098000 -0.00048000 1.00000000 228.83102 51 'helical symmetry operation' ? ? 0.73787000 0.67495000 0.00108000 -1.04155 -0.67495000 0.73787000 -0.00030000 0.43388 -0.00100000 -0.00050000 1.00000000 233.50108 52 'helical symmetry operation' ? ? 0.72778000 0.68581000 0.00109000 -1.05540 -0.68581000 0.72778000 -0.00032000 0.45035 -0.00101000 -0.00052000 1.00000000 238.17107 53 'helical symmetry operation' ? ? 0.71754000 0.69651000 0.00111000 -1.06902 -0.69651000 0.71754000 -0.00033000 0.46614 -0.00103000 -0.00054000 1.00000000 242.84113 54 'helical symmetry operation' ? ? 0.70714000 0.70707000 0.00113000 -1.08200 -0.70707000 0.70714000 -0.00035000 0.48237 -0.00105000 -0.00055000 1.00000000 247.51117 55 'helical symmetry operation' ? ? 0.69659000 0.71747000 0.00115000 -1.09464 -0.71747000 0.69659000 -0.00036000 0.49910 -0.00106000 -0.00057000 1.00000000 252.18121 56 'helical symmetry operation' ? ? 0.68588000 0.72771000 0.00116000 -1.10725 -0.72771000 0.68588000 -0.00038000 0.51566 -0.00107000 -0.00059000 1.00000000 256.85123 57 'helical symmetry operation' ? ? 0.67502000 0.73780000 0.00118000 -1.11905 -0.73780000 0.67502000 -0.00039000 0.53343 -0.00109000 -0.00061000 1.00000000 261.52127 58 'helical symmetry operation' ? ? 0.66402000 0.74772000 0.00120000 -1.13124 -0.74772000 0.66402000 -0.00041000 0.55023 -0.00110000 -0.00062000 1.00000000 266.19128 59 'helical symmetry operation' ? ? 0.65286000 0.75747000 0.00122000 -1.14195 -0.75747000 0.65287000 -0.00042000 0.56781 -0.00111000 -0.00065000 1.00000000 270.86133 60 'helical symmetry operation' ? ? 0.64157000 0.76706000 0.00123000 -1.15305 -0.76706000 0.64157000 -0.00044000 0.58578 -0.00113000 -0.00066000 1.00000000 275.53134 61 'helical symmetry operation' ? ? 0.63013000 0.77649000 0.00125000 -1.16366 -0.77649000 0.63013000 -0.00046000 0.60290 -0.00114000 -0.00068000 1.00000000 280.20135 62 'helical symmetry operation' ? ? 0.61856000 0.78574000 0.00126000 -1.17395 -0.78574000 0.61856000 -0.00047000 0.62046 -0.00115000 -0.00070000 1.00000000 284.87140 63 'helical symmetry operation' ? ? 0.60685000 0.79482000 0.00128000 -1.18375 -0.79482000 0.60685000 -0.00049000 0.63911 -0.00116000 -0.00072000 1.00000000 289.54147 64 'helical symmetry operation' ? ? 0.59500000 0.80372000 0.00130000 -1.19311 -0.80372000 0.59501000 -0.00050000 0.65741 -0.00118000 -0.00074000 1.00000000 294.21152 65 'helical symmetry operation' ? ? 0.58303000 0.81245000 0.00131000 -1.20226 -0.81245000 0.58303000 -0.00052000 0.67536 -0.00119000 -0.00076000 1.00000000 298.88150 66 'helical symmetry operation' ? ? 0.57093000 0.82100000 0.00133000 -1.21080 -0.82100000 0.57093000 -0.00054000 0.69424 -0.00120000 -0.00078000 1.00000000 303.55161 67 'helical symmetry operation' ? ? 0.55870000 0.82937000 0.00134000 -1.21940 -0.82937000 0.55870000 -0.00056000 0.71266 -0.00121000 -0.00080000 1.00000000 308.22162 68 'helical symmetry operation' ? ? 0.54635000 0.83756000 0.00135000 -1.22737 -0.83756000 0.54635000 -0.00057000 0.73163 -0.00122000 -0.00082000 1.00000000 312.89163 69 'helical symmetry operation' ? ? 0.53388000 0.84556000 0.00137000 -1.23460 -0.84556000 0.53388000 -0.00059000 0.75034 -0.00123000 -0.00084000 1.00000000 317.56168 70 'helical symmetry operation' ? ? 0.52129000 0.85338000 0.00138000 -1.24173 -0.85338000 0.52129000 -0.00061000 0.76950 -0.00124000 -0.00086000 1.00000000 322.23175 71 'helical symmetry operation' ? ? 0.50859000 0.86101000 0.00140000 -1.24889 -0.86101000 0.50859000 -0.00063000 0.78840 -0.00125000 -0.00088000 1.00000000 326.90173 72 'helical symmetry operation' ? ? 0.49578000 0.86845000 0.00141000 -1.25487 -0.86845000 0.49578000 -0.00065000 0.80810 -0.00126000 -0.00090000 1.00000000 331.57175 73 'helical symmetry operation' ? ? 0.48285000 0.87570000 0.00142000 -1.26083 -0.87570000 0.48286000 -0.00067000 0.82746 -0.00127000 -0.00092000 1.00000000 336.24179 74 'helical symmetry operation' ? ? 0.46983000 0.88276000 0.00143000 -1.26675 -0.88276000 0.46983000 -0.00069000 0.84651 -0.00128000 -0.00094000 1.00000000 340.91187 75 'helical symmetry operation' ? ? 0.45669000 0.88962000 0.00145000 -1.27180 -0.88962000 0.45670000 -0.00071000 0.86594 -0.00129000 -0.00097000 1.00000000 345.58191 76 'helical symmetry operation' ? ? 0.44346000 0.89629000 0.00146000 -1.27638 -0.89629000 0.44346000 -0.00072000 0.88585 -0.00130000 -0.00099000 1.00000000 350.25192 77 'helical symmetry operation' ? ? 0.43013000 0.90276000 0.00147000 -1.28106 -0.90276000 0.43013000 -0.00075000 0.90469 -0.00131000 -0.00101000 1.00000000 354.92197 78 'helical symmetry operation' ? ? 0.41671000 0.90904000 0.00148000 -1.28515 -0.90904000 0.41671000 -0.00076000 0.92498 -0.00131000 -0.00103000 1.00000000 359.59198 79 'helical symmetry operation' ? ? 0.40319000 0.91511000 0.00149000 -1.28864 -0.91511000 0.40319000 -0.00078000 0.94508 -0.00132000 -0.00105000 1.00000000 364.26208 80 'helical symmetry operation' ? ? 0.38959000 0.92099000 0.00151000 -1.29191 -0.92099000 0.38959000 -0.00080000 0.96472 -0.00133000 -0.00107000 1.00000000 368.93210 81 'helical symmetry operation' ? ? 0.37590000 0.92666000 0.00152000 -1.29487 -0.92666000 0.37590000 -0.00083000 0.98454 -0.00133000 -0.00109000 1.00000000 373.60217 82 'helical symmetry operation' ? ? 0.36213000 0.93213000 0.00153000 -1.29723 -0.93213000 0.36213000 -0.00085000 1.00452 -0.00134000 -0.00112000 1.00000000 378.27209 83 'helical symmetry operation' ? ? 0.34828000 0.93739000 0.00154000 -1.29930 -0.93739000 0.34828000 -0.00087000 1.02454 -0.00135000 -0.00114000 1.00000000 382.94217 84 'helical symmetry operation' ? ? 0.33435000 0.94245000 0.00155000 -1.30075 -0.94245000 0.33435000 -0.00089000 1.04455 -0.00135000 -0.00116000 1.00000000 387.61212 85 'helical symmetry operation' ? ? 0.32035000 0.94730000 0.00156000 -1.30198 -0.94730000 0.32035000 -0.00091000 1.06517 -0.00136000 -0.00118000 1.00000000 392.28223 86 'helical symmetry operation' ? ? 0.30628000 0.95194000 0.00157000 -1.30245 -0.95194000 0.30628000 -0.00093000 1.08521 -0.00136000 -0.00121000 1.00000000 396.95227 87 'helical symmetry operation' ? ? 0.29214000 0.95637000 0.00157000 -1.30321 -0.95638000 0.29214000 -0.00095000 1.10522 -0.00137000 -0.00123000 1.00000000 401.62219 88 'helical symmetry operation' ? ? 0.27793000 0.96060000 0.00158000 -1.30305 -0.96060000 0.27794000 -0.00097000 1.12516 -0.00137000 -0.00125000 1.00000000 406.29236 89 'helical symmetry operation' ? ? 0.26367000 0.96461000 0.00159000 -1.30286 -0.96461000 0.26367000 -0.00099000 1.14510 -0.00138000 -0.00127000 1.00000000 410.96237 90 'helical symmetry operation' ? ? 0.24935000 0.96841000 0.00160000 -1.30200 -0.96841000 0.24935000 -0.00101000 1.16585 -0.00138000 -0.00130000 1.00000000 415.63239 91 'helical symmetry operation' ? ? 0.23497000 0.97200000 0.00161000 -1.30075 -0.97200000 0.23497000 -0.00104000 1.18560 -0.00138000 -0.00132000 1.00000000 420.30231 92 'helical symmetry operation' ? ? 0.22054000 0.97538000 0.00161000 -1.29892 -0.97538000 0.22055000 -0.00106000 1.20619 -0.00139000 -0.00134000 1.00000000 424.97244 93 'helical symmetry operation' ? ? 0.20607000 0.97854000 0.00162000 -1.29686 -0.97854000 0.20607000 -0.00108000 1.22625 -0.00139000 -0.00136000 1.00000000 429.64270 94 'helical symmetry operation' ? ? 0.19154000 0.98148000 0.00163000 -1.29452 -0.98148000 0.19155000 -0.00110000 1.24608 -0.00139000 -0.00139000 1.00000000 434.31253 95 'helical symmetry operation' ? ? 0.17698000 0.98421000 0.00163000 -1.29177 -0.98421000 0.17698000 -0.00112000 1.26619 -0.00139000 -0.00141000 1.00000000 438.98270 96 'helical symmetry operation' ? ? 0.16238000 0.98673000 0.00164000 -1.28843 -0.98673000 0.16238000 -0.00114000 1.28608 -0.00140000 -0.00143000 1.00000000 443.65265 97 'helical symmetry operation' ? ? 0.14774000 0.98902000 0.00165000 -1.28474 -0.98903000 0.14774000 -0.00117000 1.30632 -0.00140000 -0.00146000 1.00000000 448.32254 98 'helical symmetry operation' ? ? 0.13307000 0.99111000 0.00165000 -1.28080 -0.99111000 0.13307000 -0.00119000 1.32622 -0.00140000 -0.00148000 1.00000000 452.99268 99 'helical symmetry operation' ? ? 0.11837000 0.99297000 0.00166000 -1.27594 -0.99297000 0.11837000 -0.00121000 1.34616 -0.00140000 -0.00150000 1.00000000 457.66287 100 'helical symmetry operation' ? ? 0.10364000 0.99461000 0.00166000 -1.27113 -0.99461000 0.10364000 -0.00123000 1.36619 -0.00140000 -0.00152000 1.00000000 462.33270 101 'helical symmetry operation' ? ? 0.08889000 0.99604000 0.00166000 -1.26633 -0.99604000 0.08890000 -0.00126000 1.38557 -0.00140000 -0.00155000 1.00000000 467.00281 102 'helical symmetry operation' ? ? 0.07412000 0.99725000 0.00167000 -1.26040 -0.99725000 0.07413000 -0.00128000 1.40540 -0.00140000 -0.00157000 1.00000000 471.67291 103 'helical symmetry operation' ? ? 0.05934000 0.99824000 0.00167000 -1.25426 -0.99824000 0.05934000 -0.00130000 1.42512 -0.00140000 -0.00159000 1.00000000 476.34302 104 'helical symmetry operation' ? ? 0.04454000 0.99901000 0.00168000 -1.24802 -0.99901000 0.04455000 -0.00132000 1.44441 -0.00140000 -0.00161000 1.00000000 481.01297 105 'helical symmetry operation' ? ? 0.02974000 0.99956000 0.00168000 -1.24122 -0.99956000 0.02974000 -0.00135000 1.46396 -0.00140000 -0.00164000 1.00000000 485.68289 106 'helical symmetry operation' ? ? 0.01492000 0.99989000 0.00168000 -1.23398 -0.99989000 0.01492000 -0.00137000 1.48343 -0.00139000 -0.00166000 1.00000000 490.35294 107 'helical symmetry operation' ? ? 0.00010000 1.00000000 0.00168000 -1.22611 -1.00000000 0.00011000 -0.00139000 1.50271 -0.00139000 -0.00168000 1.00000000 495.02295 108 'helical symmetry operation' ? ? -0.01471000 0.99989000 0.00169000 -1.21776 -0.99989000 -0.01471000 -0.00141000 1.52227 -0.00139000 -0.00171000 1.00000000 499.69305 109 'helical symmetry operation' ? ? -0.02953000 0.99956000 0.00169000 -1.20945 -0.99956000 -0.02952000 -0.00144000 1.54123 -0.00139000 -0.00173000 1.00000000 504.36304 110 'helical symmetry operation' ? ? -0.04433000 0.99902000 0.00169000 -1.20093 -0.99902000 -0.04433000 -0.00146000 1.55971 -0.00138000 -0.00175000 1.00000000 509.03326 111 'helical symmetry operation' ? ? -0.05913000 0.99825000 0.00169000 -1.19236 -0.99825000 -0.05913000 -0.00148000 1.57847 -0.00138000 -0.00177000 1.00000000 513.70325 112 'helical symmetry operation' ? ? -0.07392000 0.99726000 0.00169000 -1.18241 -0.99726000 -0.07392000 -0.00151000 1.59690 -0.00138000 -0.00180000 1.00000000 518.37329 113 'helical symmetry operation' ? ? -0.08869000 0.99606000 0.00169000 -1.17247 -0.99606000 -0.08868000 -0.00153000 1.61544 -0.00137000 -0.00182000 1.00000000 523.04315 114 'helical symmetry operation' ? ? -0.10344000 0.99463000 0.00169000 -1.16182 -0.99464000 -0.10343000 -0.00155000 1.63422 -0.00137000 -0.00184000 1.00000000 527.71313 # _struct_biol.id 1 _struct_biol.details ? # _pdbx_helical_symmetry.entry_id 2M5K _pdbx_helical_symmetry.number_of_operations 114 _pdbx_helical_symmetry.rotation_per_n_subunits -0.85 _pdbx_helical_symmetry.rise_per_n_subunits 4.67 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M5K _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M5K _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '15 mg/mL [U-100% 13C; U-100% 15N] TTR(105-115), 10% acetonitrile/water solution' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '10% acetonitrile/water solution' # _pdbx_nmr_exptl_sample.component 'TTR(105-115)-1' _pdbx_nmr_exptl_sample.concentration 15 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mg/mL _pdbx_nmr_exptl_sample.isotopic_labeling '[U-100% 13C; U-100% 15N]' _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '1D DQ-DRAWS' 1 2 1 REDOR 1 3 1 ZF-TEDOR 1 4 1 '2D PDSD' # _pdbx_nmr_refine.entry_id 2M5K _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNSSOLVE ? 1 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNSSOLVE ? 2 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 2M5K _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 2M5K _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'Common crossovers' _em_3d_reconstruction.nominal_pixel_size 1.8 _em_3d_reconstruction.actual_pixel_size 1.8 _em_3d_reconstruction.resolution 12.7 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details 'The particles were selected using an automatic selection program.' _em_3d_reconstruction.num_particles 82 _em_3d_reconstruction.num_class_averages 18 _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '10% acetonitrile/water' _em_buffer.pH 2 _em_buffer.details '10% acetonitrile/water' # _em_entity_assembly.id 1 _em_entity_assembly.name 'Doublet cross-beta amyloid fibril polymorph' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 2M5K _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 250 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 2M5K _em_imaging.id 1 _em_imaging.date 2006-03-03 _em_imaging.specimen_id 1 _em_imaging.temperature 99 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min 900 _em_imaging.nominal_defocus_max 3000 _em_imaging.tilt_angle_min 0 _em_imaging.tilt_angle_max 0 _em_imaging.nominal_cs ? _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 40000 _em_imaging.calibrated_magnification 40000 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'GATAN LIQUID NITROGEN' _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params 0 _em_imaging.astigmatism 'Objective lens astigmatism was corrected at 100,000 times magnification.' _em_imaging.citation_id ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'holey carbon films (R2/2, QuantifoilMicro Tools GmbH, Jena, Germany)' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 2M5K _em_vitrification.id 1 _em_vitrification.details 'Fibrils were applied to holey carbon films that were immediately plunge-frozen at liquid nitrogen temperature.' _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 95 _em_vitrification.temp 99 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.specimen_id 1 # _em_experiment.entry_id 2M5K _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ILE N N N N 14 ILE CA C N S 15 ILE C C N N 16 ILE O O N N 17 ILE CB C N S 18 ILE CG1 C N N 19 ILE CG2 C N N 20 ILE CD1 C N N 21 ILE OXT O N N 22 ILE H H N N 23 ILE H2 H N N 24 ILE HA H N N 25 ILE HB H N N 26 ILE HG12 H N N 27 ILE HG13 H N N 28 ILE HG21 H N N 29 ILE HG22 H N N 30 ILE HG23 H N N 31 ILE HD11 H N N 32 ILE HD12 H N N 33 ILE HD13 H N N 34 ILE HXT H N N 35 LEU N N N N 36 LEU CA C N S 37 LEU C C N N 38 LEU O O N N 39 LEU CB C N N 40 LEU CG C N N 41 LEU CD1 C N N 42 LEU CD2 C N N 43 LEU OXT O N N 44 LEU H H N N 45 LEU H2 H N N 46 LEU HA H N N 47 LEU HB2 H N N 48 LEU HB3 H N N 49 LEU HG H N N 50 LEU HD11 H N N 51 LEU HD12 H N N 52 LEU HD13 H N N 53 LEU HD21 H N N 54 LEU HD22 H N N 55 LEU HD23 H N N 56 LEU HXT H N N 57 PRO N N N N 58 PRO CA C N S 59 PRO C C N N 60 PRO O O N N 61 PRO CB C N N 62 PRO CG C N N 63 PRO CD C N N 64 PRO OXT O N N 65 PRO H H N N 66 PRO HA H N N 67 PRO HB2 H N N 68 PRO HB3 H N N 69 PRO HG2 H N N 70 PRO HG3 H N N 71 PRO HD2 H N N 72 PRO HD3 H N N 73 PRO HXT H N N 74 SER N N N N 75 SER CA C N S 76 SER C C N N 77 SER O O N N 78 SER CB C N N 79 SER OG O N N 80 SER OXT O N N 81 SER H H N N 82 SER H2 H N N 83 SER HA H N N 84 SER HB2 H N N 85 SER HB3 H N N 86 SER HG H N N 87 SER HXT H N N 88 THR N N N N 89 THR CA C N S 90 THR C C N N 91 THR O O N N 92 THR CB C N R 93 THR OG1 O N N 94 THR CG2 C N N 95 THR OXT O N N 96 THR H H N N 97 THR H2 H N N 98 THR HA H N N 99 THR HB H N N 100 THR HG1 H N N 101 THR HG21 H N N 102 THR HG22 H N N 103 THR HG23 H N N 104 THR HXT H N N 105 TYR N N N N 106 TYR CA C N S 107 TYR C C N N 108 TYR O O N N 109 TYR CB C N N 110 TYR CG C Y N 111 TYR CD1 C Y N 112 TYR CD2 C Y N 113 TYR CE1 C Y N 114 TYR CE2 C Y N 115 TYR CZ C Y N 116 TYR OH O N N 117 TYR OXT O N N 118 TYR H H N N 119 TYR H2 H N N 120 TYR HA H N N 121 TYR HB2 H N N 122 TYR HB3 H N N 123 TYR HD1 H N N 124 TYR HD2 H N N 125 TYR HE1 H N N 126 TYR HE2 H N N 127 TYR HH H N N 128 TYR HXT H N N 129 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ILE N CA sing N N 13 ILE N H sing N N 14 ILE N H2 sing N N 15 ILE CA C sing N N 16 ILE CA CB sing N N 17 ILE CA HA sing N N 18 ILE C O doub N N 19 ILE C OXT sing N N 20 ILE CB CG1 sing N N 21 ILE CB CG2 sing N N 22 ILE CB HB sing N N 23 ILE CG1 CD1 sing N N 24 ILE CG1 HG12 sing N N 25 ILE CG1 HG13 sing N N 26 ILE CG2 HG21 sing N N 27 ILE CG2 HG22 sing N N 28 ILE CG2 HG23 sing N N 29 ILE CD1 HD11 sing N N 30 ILE CD1 HD12 sing N N 31 ILE CD1 HD13 sing N N 32 ILE OXT HXT sing N N 33 LEU N CA sing N N 34 LEU N H sing N N 35 LEU N H2 sing N N 36 LEU CA C sing N N 37 LEU CA CB sing N N 38 LEU CA HA sing N N 39 LEU C O doub N N 40 LEU C OXT sing N N 41 LEU CB CG sing N N 42 LEU CB HB2 sing N N 43 LEU CB HB3 sing N N 44 LEU CG CD1 sing N N 45 LEU CG CD2 sing N N 46 LEU CG HG sing N N 47 LEU CD1 HD11 sing N N 48 LEU CD1 HD12 sing N N 49 LEU CD1 HD13 sing N N 50 LEU CD2 HD21 sing N N 51 LEU CD2 HD22 sing N N 52 LEU CD2 HD23 sing N N 53 LEU OXT HXT sing N N 54 PRO N CA sing N N 55 PRO N CD sing N N 56 PRO N H sing N N 57 PRO CA C sing N N 58 PRO CA CB sing N N 59 PRO CA HA sing N N 60 PRO C O doub N N 61 PRO C OXT sing N N 62 PRO CB CG sing N N 63 PRO CB HB2 sing N N 64 PRO CB HB3 sing N N 65 PRO CG CD sing N N 66 PRO CG HG2 sing N N 67 PRO CG HG3 sing N N 68 PRO CD HD2 sing N N 69 PRO CD HD3 sing N N 70 PRO OXT HXT sing N N 71 SER N CA sing N N 72 SER N H sing N N 73 SER N H2 sing N N 74 SER CA C sing N N 75 SER CA CB sing N N 76 SER CA HA sing N N 77 SER C O doub N N 78 SER C OXT sing N N 79 SER CB OG sing N N 80 SER CB HB2 sing N N 81 SER CB HB3 sing N N 82 SER OG HG sing N N 83 SER OXT HXT sing N N 84 THR N CA sing N N 85 THR N H sing N N 86 THR N H2 sing N N 87 THR CA C sing N N 88 THR CA CB sing N N 89 THR CA HA sing N N 90 THR C O doub N N 91 THR C OXT sing N N 92 THR CB OG1 sing N N 93 THR CB CG2 sing N N 94 THR CB HB sing N N 95 THR OG1 HG1 sing N N 96 THR CG2 HG21 sing N N 97 THR CG2 HG22 sing N N 98 THR CG2 HG23 sing N N 99 THR OXT HXT sing N N 100 TYR N CA sing N N 101 TYR N H sing N N 102 TYR N H2 sing N N 103 TYR CA C sing N N 104 TYR CA CB sing N N 105 TYR CA HA sing N N 106 TYR C O doub N N 107 TYR C OXT sing N N 108 TYR CB CG sing N N 109 TYR CB HB2 sing N N 110 TYR CB HB3 sing N N 111 TYR CG CD1 doub Y N 112 TYR CG CD2 sing Y N 113 TYR CD1 CE1 sing Y N 114 TYR CD1 HD1 sing N N 115 TYR CD2 CE2 doub Y N 116 TYR CD2 HD2 sing N N 117 TYR CE1 CZ doub Y N 118 TYR CE1 HE1 sing N N 119 TYR CE2 CZ sing Y N 120 TYR CE2 HE2 sing N N 121 TYR CZ OH sing N N 122 TYR OH HH sing N N 123 TYR OXT HXT sing N N 124 # _em_ctf_correction.id 1 _em_ctf_correction.details CTFFIND3 _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image . _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 BKRP ? RECONSTRUCTION ? 1 2 IMAGIC ? RECONSTRUCTION ? 1 3 SPIDER ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 1 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Bruker ? 1 Bruker 750 . ? 2 ? 500 . ? 3 ? # _atom_sites.entry_id 2M5K _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_