data_2M5M # _entry.id 2M5M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.390 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2M5M pdb_00002m5m 10.2210/pdb2m5m/pdb RCSB RCSB103238 ? ? BMRB 19060 ? ? WWPDB D_1000103238 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-12-04 2 'Structure model' 1 1 2018-07-18 3 'Structure model' 1 2 2020-02-26 4 'Structure model' 1 3 2023-06-14 5 'Structure model' 1 4 2024-04-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Data collection' 3 3 'Structure model' Other 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 5 'Structure model' 'Data collection' 8 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' em_single_particle_entity 2 2 'Structure model' em_software 3 3 'Structure model' pdbx_database_status 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_database_status 6 4 'Structure model' pdbx_struct_oper_list 7 5 'Structure model' chem_comp_atom 8 5 'Structure model' chem_comp_bond 9 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_em_software.image_processing_id' 2 3 'Structure model' '_pdbx_database_status.status_code_cs' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_database_status.status_code_nmr_data' 6 4 'Structure model' '_pdbx_struct_oper_list.name' 7 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 8 4 'Structure model' '_pdbx_struct_oper_list.type' 9 5 'Structure model' '_pdbx_database_status.status_code_mr' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2M5M _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-02-27 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 19060 BMRB unspecified . EMD-2323 EMDB 'associated EM volume' . EMD-5590 EMDB 'other EM volume' . EMD-2324 EMDB 'other EM volume' . 3ZPK PDB unspecified . 2M5K PDB unspecified . 2M5N PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fitzpatrick, A.W.P.' 1 'Debelouchina, G.T.' 2 'Bayro, M.J.' 3 'Clare, D.K.' 4 'Caporini, M.A.' 5 'Bajaj, V.S.' 6 'Jaroniec, C.P.' 7 'Wang, L.' 8 'Ladizhansky, V.' 9 'Muller, S.' 10 'MacPhee, C.E.' 11 'Waudby, C.A.' 12 'Mott, H.R.' 13 'de Simone, A.' 14 'Knowles, T.P.J.' 15 'Saibil, H.R.' 16 'Vendruscolo, M.' 17 'Orlova, E.V.' 18 'Griffin, R.G.' 19 'Dobson, C.M.' 20 # _citation.id primary _citation.title 'Atomic structure and hierarchical assembly of a cross-beta amyloid fibril.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 5468 _citation.page_last 5473 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23513222 _citation.pdbx_database_id_DOI 10.1073/pnas.1219476110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fitzpatrick, A.W.' 1 ? primary 'Debelouchina, G.T.' 2 ? primary 'Bayro, M.J.' 3 ? primary 'Clare, D.K.' 4 ? primary 'Caporini, M.A.' 5 ? primary 'Bajaj, V.S.' 6 ? primary 'Jaroniec, C.P.' 7 ? primary 'Wang, L.' 8 ? primary 'Ladizhansky, V.' 9 ? primary 'Muller, S.A.' 10 ? primary 'MacPhee, C.E.' 11 ? primary 'Waudby, C.A.' 12 ? primary 'Mott, H.R.' 13 ? primary 'De Simone, A.' 14 ? primary 'Knowles, T.P.' 15 ? primary 'Saibil, H.R.' 16 ? primary 'Vendruscolo, M.' 17 ? primary 'Orlova, E.V.' 18 ? primary 'Griffin, R.G.' 19 ? primary 'Dobson, C.M.' 20 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description Transthyretin _entity.formula_weight 1198.366 _entity.pdbx_number_of_molecules 12 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'residues 125-135' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Prealbumin, TBPA' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code YTIAALLSPYS _entity_poly.pdbx_seq_one_letter_code_can YTIAALLSPYS _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I,J,K,L _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 THR n 1 3 ILE n 1 4 ALA n 1 5 ALA n 1 6 LEU n 1 7 LEU n 1 8 SER n 1 9 PRO n 1 10 TYR n 1 11 SER n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Rattus norvegicus' _pdbx_entity_src_syn.organism_common_name rat _pdbx_entity_src_syn.ncbi_taxonomy_id 10116 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 1 1 TYR TYR A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 SER 11 11 11 SER SER A . n B 1 1 TYR 1 1 1 TYR TYR B . n B 1 2 THR 2 2 2 THR THR B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 ALA 4 4 4 ALA ALA B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 LEU 6 6 6 LEU LEU B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 SER 8 8 8 SER SER B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 TYR 10 10 10 TYR TYR B . n B 1 11 SER 11 11 11 SER SER B . n C 1 1 TYR 1 1 1 TYR TYR C . n C 1 2 THR 2 2 2 THR THR C . n C 1 3 ILE 3 3 3 ILE ILE C . n C 1 4 ALA 4 4 4 ALA ALA C . n C 1 5 ALA 5 5 5 ALA ALA C . n C 1 6 LEU 6 6 6 LEU LEU C . n C 1 7 LEU 7 7 7 LEU LEU C . n C 1 8 SER 8 8 8 SER SER C . n C 1 9 PRO 9 9 9 PRO PRO C . n C 1 10 TYR 10 10 10 TYR TYR C . n C 1 11 SER 11 11 11 SER SER C . n D 1 1 TYR 1 1 1 TYR TYR D . n D 1 2 THR 2 2 2 THR THR D . n D 1 3 ILE 3 3 3 ILE ILE D . n D 1 4 ALA 4 4 4 ALA ALA D . n D 1 5 ALA 5 5 5 ALA ALA D . n D 1 6 LEU 6 6 6 LEU LEU D . n D 1 7 LEU 7 7 7 LEU LEU D . n D 1 8 SER 8 8 8 SER SER D . n D 1 9 PRO 9 9 9 PRO PRO D . n D 1 10 TYR 10 10 10 TYR TYR D . n D 1 11 SER 11 11 11 SER SER D . n E 1 1 TYR 1 1 1 TYR TYR E . n E 1 2 THR 2 2 2 THR THR E . n E 1 3 ILE 3 3 3 ILE ILE E . n E 1 4 ALA 4 4 4 ALA ALA E . n E 1 5 ALA 5 5 5 ALA ALA E . n E 1 6 LEU 6 6 6 LEU LEU E . n E 1 7 LEU 7 7 7 LEU LEU E . n E 1 8 SER 8 8 8 SER SER E . n E 1 9 PRO 9 9 9 PRO PRO E . n E 1 10 TYR 10 10 10 TYR TYR E . n E 1 11 SER 11 11 11 SER SER E . n F 1 1 TYR 1 1 1 TYR TYR F . n F 1 2 THR 2 2 2 THR THR F . n F 1 3 ILE 3 3 3 ILE ILE F . n F 1 4 ALA 4 4 4 ALA ALA F . n F 1 5 ALA 5 5 5 ALA ALA F . n F 1 6 LEU 6 6 6 LEU LEU F . n F 1 7 LEU 7 7 7 LEU LEU F . n F 1 8 SER 8 8 8 SER SER F . n F 1 9 PRO 9 9 9 PRO PRO F . n F 1 10 TYR 10 10 10 TYR TYR F . n F 1 11 SER 11 11 11 SER SER F . n G 1 1 TYR 1 1 1 TYR TYR G . n G 1 2 THR 2 2 2 THR THR G . n G 1 3 ILE 3 3 3 ILE ILE G . n G 1 4 ALA 4 4 4 ALA ALA G . n G 1 5 ALA 5 5 5 ALA ALA G . n G 1 6 LEU 6 6 6 LEU LEU G . n G 1 7 LEU 7 7 7 LEU LEU G . n G 1 8 SER 8 8 8 SER SER G . n G 1 9 PRO 9 9 9 PRO PRO G . n G 1 10 TYR 10 10 10 TYR TYR G . n G 1 11 SER 11 11 11 SER SER G . n H 1 1 TYR 1 1 1 TYR TYR H . n H 1 2 THR 2 2 2 THR THR H . n H 1 3 ILE 3 3 3 ILE ILE H . n H 1 4 ALA 4 4 4 ALA ALA H . n H 1 5 ALA 5 5 5 ALA ALA H . n H 1 6 LEU 6 6 6 LEU LEU H . n H 1 7 LEU 7 7 7 LEU LEU H . n H 1 8 SER 8 8 8 SER SER H . n H 1 9 PRO 9 9 9 PRO PRO H . n H 1 10 TYR 10 10 10 TYR TYR H . n H 1 11 SER 11 11 11 SER SER H . n I 1 1 TYR 1 1 1 TYR TYR I . n I 1 2 THR 2 2 2 THR THR I . n I 1 3 ILE 3 3 3 ILE ILE I . n I 1 4 ALA 4 4 4 ALA ALA I . n I 1 5 ALA 5 5 5 ALA ALA I . n I 1 6 LEU 6 6 6 LEU LEU I . n I 1 7 LEU 7 7 7 LEU LEU I . n I 1 8 SER 8 8 8 SER SER I . n I 1 9 PRO 9 9 9 PRO PRO I . n I 1 10 TYR 10 10 10 TYR TYR I . n I 1 11 SER 11 11 11 SER SER I . n J 1 1 TYR 1 1 1 TYR TYR J . n J 1 2 THR 2 2 2 THR THR J . n J 1 3 ILE 3 3 3 ILE ILE J . n J 1 4 ALA 4 4 4 ALA ALA J . n J 1 5 ALA 5 5 5 ALA ALA J . n J 1 6 LEU 6 6 6 LEU LEU J . n J 1 7 LEU 7 7 7 LEU LEU J . n J 1 8 SER 8 8 8 SER SER J . n J 1 9 PRO 9 9 9 PRO PRO J . n J 1 10 TYR 10 10 10 TYR TYR J . n J 1 11 SER 11 11 11 SER SER J . n K 1 1 TYR 1 1 1 TYR TYR K . n K 1 2 THR 2 2 2 THR THR K . n K 1 3 ILE 3 3 3 ILE ILE K . n K 1 4 ALA 4 4 4 ALA ALA K . n K 1 5 ALA 5 5 5 ALA ALA K . n K 1 6 LEU 6 6 6 LEU LEU K . n K 1 7 LEU 7 7 7 LEU LEU K . n K 1 8 SER 8 8 8 SER SER K . n K 1 9 PRO 9 9 9 PRO PRO K . n K 1 10 TYR 10 10 10 TYR TYR K . n K 1 11 SER 11 11 11 SER SER K . n L 1 1 TYR 1 1 1 TYR TYR L . n L 1 2 THR 2 2 2 THR THR L . n L 1 3 ILE 3 3 3 ILE ILE L . n L 1 4 ALA 4 4 4 ALA ALA L . n L 1 5 ALA 5 5 5 ALA ALA L . n L 1 6 LEU 6 6 6 LEU LEU L . n L 1 7 LEU 7 7 7 LEU LEU L . n L 1 8 SER 8 8 8 SER SER L . n L 1 9 PRO 9 9 9 PRO PRO L . n L 1 10 TYR 10 10 10 TYR TYR L . n L 1 11 SER 11 11 11 SER SER L . n # loop_ _exptl.absorpt_coefficient_mu _exptl.absorpt_correction_T_max _exptl.absorpt_correction_T_min _exptl.absorpt_correction_type _exptl.absorpt_process_details _exptl.crystals_number _exptl.details _exptl.entry_id _exptl.method _exptl.method_details ? ? ? ? ? ? ? 2M5M 'SOLID-STATE NMR' ? ? ? ? ? ? ? ? 2M5M 'ELECTRON MICROSCOPY' ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1020 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1020 _refine_hist.d_res_high . _refine_hist.d_res_low . # _struct.entry_id 2M5M _struct.title 'Atomic-resolution structure of a triplet cross-beta amyloid fibril' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2M5M _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' _struct_keywords.text 'Amyloid fibril, Cross-beta structure, PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TTHY_RAT _struct_ref.pdbx_db_accession P02767 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code YTIAALLSPYS _struct_ref.pdbx_align_begin 125 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2M5M A 1 ? 11 ? P02767 125 ? 135 ? 1 11 2 1 2M5M B 1 ? 11 ? P02767 125 ? 135 ? 1 11 3 1 2M5M C 1 ? 11 ? P02767 125 ? 135 ? 1 11 4 1 2M5M D 1 ? 11 ? P02767 125 ? 135 ? 1 11 5 1 2M5M E 1 ? 11 ? P02767 125 ? 135 ? 1 11 6 1 2M5M F 1 ? 11 ? P02767 125 ? 135 ? 1 11 7 1 2M5M G 1 ? 11 ? P02767 125 ? 135 ? 1 11 8 1 2M5M H 1 ? 11 ? P02767 125 ? 135 ? 1 11 9 1 2M5M I 1 ? 11 ? P02767 125 ? 135 ? 1 11 10 1 2M5M J 1 ? 11 ? P02767 125 ? 135 ? 1 11 11 1 2M5M K 1 ? 11 ? P02767 125 ? 135 ? 1 11 12 1 2M5M L 1 ? 11 ? P02767 125 ? 135 ? 1 11 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 'representative helical assembly' ? helical 114 2 'helical asymmetric unit' ? dodecameric 12 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 '(1-114)' A,B,C,D,E,F,G,H,I,J,K,L 2 1 A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.00000000 0.00000000 0.00000000 0.00000 0.00000000 1.00000000 0.00000000 0.00000 0.00000000 0.00000000 1.00000000 0.00000 2 'helical symmetry operation' ? ? 0.99987000 -0.01619000 -0.00002000 0.02837 0.01619000 0.99987000 0.00000000 0.00077 0.00002000 0.00000000 1.00000000 -4.66913 3 'helical symmetry operation' ? ? 0.99948000 -0.03238000 -0.00004000 0.05607 0.03238000 0.99948000 0.00000000 0.00123 0.00004000 -0.00001000 1.00000000 -9.33957 4 'helical symmetry operation' ? ? 0.99882000 -0.04856000 -0.00006000 0.08481 0.04856000 0.99882000 0.00001000 0.00250 0.00006000 -0.00001000 1.00000000 -14.00952 5 'helical symmetry operation' ? ? 0.99790000 -0.06473000 -0.00008000 0.11326 0.06473000 0.99790000 0.00001000 0.00426 0.00008000 -0.00001000 1.00000000 -18.67961 6 'helical symmetry operation' ? ? 0.99672000 -0.08088000 -0.00010000 0.14176 0.08088000 0.99672000 0.00001000 0.00653 0.00010000 -0.00001000 1.00000000 -23.34938 7 'helical symmetry operation' ? ? 0.99528000 -0.09701000 -0.00012000 0.17046 0.09701000 0.99528000 0.00001000 0.00910 0.00012000 -0.00002000 1.00000000 -28.01962 8 'helical symmetry operation' ? ? 0.99358000 -0.11311000 -0.00014000 0.19871 0.11311000 0.99358000 0.00001000 0.01172 0.00014000 -0.00003000 1.00000000 -32.68961 9 'helical symmetry operation' ? ? 0.99162000 -0.12918000 -0.00016000 0.22715 0.12918000 0.99162000 0.00001000 0.01533 0.00015000 -0.00003000 1.00000000 -37.35913 10 'helical symmetry operation' ? ? 0.98940000 -0.14522000 -0.00018000 0.25586 0.14522000 0.98940000 0.00001000 0.01920 0.00017000 -0.00003000 1.00000000 -42.02959 11 'helical symmetry operation' ? ? 0.98692000 -0.16123000 -0.00020000 0.28473 0.16123000 0.98692000 0.00001000 0.02360 0.00019000 -0.00004000 1.00000000 -46.69931 12 'helical symmetry operation' ? ? 0.98418000 -0.17718000 -0.00022000 0.31327 0.17718000 0.98418000 0.00001000 0.02853 0.00021000 -0.00005000 1.00000000 -51.36960 13 'helical symmetry operation' ? ? 0.98118000 -0.19310000 -0.00024000 0.34215 0.19310000 0.98118000 0.00001000 0.03400 0.00023000 -0.00005000 1.00000000 -56.03931 14 'helical symmetry operation' ? ? 0.97792000 -0.20896000 -0.00026000 0.37060 0.20896000 0.97792000 0.00001000 0.03930 0.00025000 -0.00006000 1.00000000 -60.70946 15 'helical symmetry operation' ? ? 0.97441000 -0.22477000 -0.00028000 0.39923 0.22477000 0.97441000 0.00000000 0.04558 0.00027000 -0.00007000 1.00000000 -65.37939 16 'helical symmetry operation' ? ? 0.97065000 -0.24052000 -0.00030000 0.42828 0.24052000 0.97065000 0.00000000 0.05259 0.00029000 -0.00007000 1.00000000 -70.04941 17 'helical symmetry operation' ? ? 0.96662000 -0.25620000 -0.00031000 0.45660 0.25620000 0.96662000 0.00000000 0.05933 0.00030000 -0.00008000 1.00000000 -74.71945 18 'helical symmetry operation' ? ? 0.96235000 -0.27182000 -0.00034000 0.48559 0.27182000 0.96235000 -0.00001000 0.06745 0.00032000 -0.00009000 1.00000000 -79.38939 19 'helical symmetry operation' ? ? 0.95782000 -0.28737000 -0.00036000 0.51418 0.28737000 0.95782000 -0.00001000 0.07555 0.00034000 -0.00009000 1.00000000 -84.05936 20 'helical symmetry operation' ? ? 0.95304000 -0.30284000 -0.00037000 0.54278 0.30284000 0.95304000 -0.00001000 0.08389 0.00036000 -0.00010000 1.00000000 -88.72942 21 'helical symmetry operation' ? ? 0.94801000 -0.31823000 -0.00039000 0.57115 0.31823000 0.94801000 -0.00002000 0.09249 0.00038000 -0.00011000 1.00000000 -93.39932 22 'helical symmetry operation' ? ? 0.94274000 -0.33354000 -0.00041000 0.59962 0.33354000 0.94274000 -0.00002000 0.10198 0.00040000 -0.00012000 1.00000000 -98.06947 23 'helical symmetry operation' ? ? 0.93721000 -0.34876000 -0.00043000 0.62780 0.34876000 0.93721000 -0.00002000 0.11171 0.00041000 -0.00013000 1.00000000 -102.73927 24 'helical symmetry operation' ? ? 0.93144000 -0.36389000 -0.00045000 0.65609 0.36389000 0.93144000 -0.00003000 0.12195 0.00043000 -0.00014000 1.00000000 -107.40921 25 'helical symmetry operation' ? ? 0.92543000 -0.37893000 -0.00047000 0.68455 0.37893000 0.92543000 -0.00003000 0.13268 0.00045000 -0.00015000 1.00000000 -112.07950 26 'helical symmetry operation' ? ? 0.91917000 -0.39386000 -0.00049000 0.71273 0.39386000 0.91917000 -0.00004000 0.14388 0.00047000 -0.00016000 1.00000000 -116.74925 27 'helical symmetry operation' ? ? 0.91267000 -0.40869000 -0.00051000 0.74089 0.40869000 0.91267000 -0.00005000 0.15579 0.00048000 -0.00017000 1.00000000 -121.41946 28 'helical symmetry operation' ? ? 0.90593000 -0.42342000 -0.00053000 0.76866 0.42342000 0.90593000 -0.00005000 0.16759 0.00050000 -0.00018000 1.00000000 -126.08916 29 'helical symmetry operation' ? ? 0.89896000 -0.43803000 -0.00055000 0.79668 0.43803000 0.89896000 -0.00006000 0.18011 0.00052000 -0.00019000 1.00000000 -130.75922 30 'helical symmetry operation' ? ? 0.89175000 -0.45253000 -0.00057000 0.82441 0.45253000 0.89175000 -0.00006000 0.19327 0.00053000 -0.00020000 1.00000000 -135.42908 31 'helical symmetry operation' ? ? 0.88430000 -0.46691000 -0.00058000 0.85202 0.46691000 0.88430000 -0.00007000 0.20672 0.00055000 -0.00021000 1.00000000 -140.09924 32 'helical symmetry operation' ? ? 0.87663000 -0.48117000 -0.00060000 0.87949 0.48117000 0.87663000 -0.00008000 0.22044 0.00057000 -0.00022000 1.00000000 -144.76936 33 'helical symmetry operation' ? ? 0.86872000 -0.49530000 -0.00062000 0.90682 0.49530000 0.86872000 -0.00009000 0.23448 0.00058000 -0.00023000 1.00000000 -149.43933 34 'helical symmetry operation' ? ? 0.86059000 -0.50930000 -0.00064000 0.93403 0.50930000 0.86059000 -0.00009000 0.24912 0.00060000 -0.00025000 1.00000000 -154.10921 35 'helical symmetry operation' ? ? 0.85223000 -0.52317000 -0.00066000 0.96109 0.52317000 0.85223000 -0.00010000 0.26402 0.00061000 -0.00026000 1.00000000 -158.77904 36 'helical symmetry operation' ? ? 0.84364000 -0.53690000 -0.00067000 0.98808 0.53690000 0.84364000 -0.00011000 0.27968 0.00063000 -0.00027000 1.00000000 -163.44910 37 'helical symmetry operation' ? ? 0.83484000 -0.55049000 -0.00069000 1.01490 0.55049000 0.83484000 -0.00012000 0.29571 0.00064000 -0.00028000 1.00000000 -168.11902 38 'helical symmetry operation' ? ? 0.82582000 -0.56394000 -0.00071000 1.04119 0.56394000 0.82582000 -0.00013000 0.31201 0.00066000 -0.00030000 1.00000000 -172.78908 39 'helical symmetry operation' ? ? 0.81658000 -0.57724000 -0.00073000 1.06761 0.57724000 0.81658000 -0.00014000 0.32864 0.00067000 -0.00031000 1.00000000 -177.45898 40 'helical symmetry operation' ? ? 0.80712000 -0.59038000 -0.00074000 1.09387 0.59038000 0.80712000 -0.00015000 0.34604 0.00069000 -0.00032000 1.00000000 -182.12900 41 'helical symmetry operation' ? ? 0.79746000 -0.60338000 -0.00076000 1.11989 0.60338000 0.79746000 -0.00016000 0.36351 0.00070000 -0.00034000 1.00000000 -186.79904 42 'helical symmetry operation' ? ? 0.78758000 -0.61621000 -0.00078000 1.14591 0.61621000 0.78758000 -0.00017000 0.38175 0.00072000 -0.00035000 1.00000000 -191.46902 43 'helical symmetry operation' ? ? 0.77750000 -0.62888000 -0.00080000 1.17142 0.62888000 0.77750000 -0.00018000 0.40002 0.00073000 -0.00036000 1.00000000 -196.13901 44 'helical symmetry operation' ? ? 0.76722000 -0.64139000 -0.00081000 1.19699 0.64139000 0.76722000 -0.00019000 0.41907 0.00074000 -0.00038000 1.00000000 -200.80899 45 'helical symmetry operation' ? ? 0.75673000 -0.65373000 -0.00083000 1.22201 0.65373000 0.75673000 -0.00020000 0.43803 0.00076000 -0.00039000 1.00000000 -205.47888 46 'helical symmetry operation' ? ? 0.74605000 -0.66589000 -0.00085000 1.24709 0.66589000 0.74605000 -0.00021000 0.45745 0.00077000 -0.00041000 1.00000000 -210.14893 47 'helical symmetry operation' ? ? 0.73517000 -0.67789000 -0.00086000 1.27166 0.67789000 0.73517000 -0.00022000 0.47747 0.00078000 -0.00042000 1.00000000 -214.81889 48 'helical symmetry operation' ? ? 0.72409000 -0.68970000 -0.00088000 1.29629 0.68970000 0.72409000 -0.00023000 0.49827 0.00080000 -0.00044000 1.00000000 -219.48885 49 'helical symmetry operation' ? ? 0.71283000 -0.70134000 -0.00089000 1.32049 0.70134000 0.71283000 -0.00024000 0.51891 0.00081000 -0.00045000 1.00000000 -224.15883 50 'helical symmetry operation' ? ? 0.70138000 -0.71279000 -0.00091000 1.34473 0.71279000 0.70138000 -0.00026000 0.54017 0.00082000 -0.00047000 1.00000000 -228.82880 51 'helical symmetry operation' ? ? 0.68975000 -0.72405000 -0.00093000 1.36858 0.72405000 0.68975000 -0.00027000 0.56165 0.00083000 -0.00048000 1.00000000 -233.49879 52 'helical symmetry operation' ? ? 0.67793000 -0.73512000 -0.00094000 1.39199 0.73512000 0.67793000 -0.00028000 0.58332 0.00084000 -0.00050000 1.00000000 -238.16875 53 'helical symmetry operation' ? ? 0.66594000 -0.74601000 -0.00096000 1.41529 0.74601000 0.66594000 -0.00029000 0.60596 0.00086000 -0.00052000 1.00000000 -242.83878 54 'helical symmetry operation' ? ? 0.65377000 -0.75669000 -0.00097000 1.43818 0.75669000 0.65377000 -0.00031000 0.62854 0.00087000 -0.00053000 1.00000000 -247.50868 55 'helical symmetry operation' ? ? 0.64143000 -0.76718000 -0.00098000 1.46074 0.76718000 0.64143000 -0.00032000 0.65164 0.00088000 -0.00055000 1.00000000 -252.17865 56 'helical symmetry operation' ? ? 0.62893000 -0.77746000 -0.00100000 1.48317 0.77746000 0.62893000 -0.00034000 0.67500 0.00089000 -0.00057000 1.00000000 -256.84863 57 'helical symmetry operation' ? ? 0.61626000 -0.78755000 -0.00101000 1.50544 0.78755000 0.61626000 -0.00035000 0.69853 0.00090000 -0.00058000 1.00000000 -261.51862 58 'helical symmetry operation' ? ? 0.60342000 -0.79742000 -0.00103000 1.52721 0.79742000 0.60342000 -0.00036000 0.72238 0.00091000 -0.00060000 1.00000000 -266.18860 59 'helical symmetry operation' ? ? 0.59043000 -0.80709000 -0.00104000 1.54891 0.80709000 0.59043000 -0.00038000 0.74665 0.00092000 -0.00062000 1.00000000 -270.85858 60 'helical symmetry operation' ? ? 0.57729000 -0.81654000 -0.00105000 1.56995 0.81654000 0.57729000 -0.00039000 0.77151 0.00093000 -0.00063000 1.00000000 -275.52853 61 'helical symmetry operation' ? ? 0.56399000 -0.82578000 -0.00107000 1.59092 0.82578000 0.56399000 -0.00041000 0.79661 0.00094000 -0.00065000 1.00000000 -280.19849 62 'helical symmetry operation' ? ? 0.55054000 -0.83481000 -0.00108000 1.61143 0.83481000 0.55054000 -0.00042000 0.82207 0.00095000 -0.00067000 1.00000000 -284.86847 63 'helical symmetry operation' ? ? 0.53695000 -0.84361000 -0.00109000 1.63173 0.84361000 0.53695000 -0.00044000 0.84766 0.00095000 -0.00069000 1.00000000 -289.53845 64 'helical symmetry operation' ? ? 0.52322000 -0.85220000 -0.00111000 1.65169 0.85220000 0.52322000 -0.00045000 0.87375 0.00096000 -0.00071000 1.00000000 -294.20837 65 'helical symmetry operation' ? ? 0.50935000 -0.86056000 -0.00112000 1.67126 0.86056000 0.50935000 -0.00047000 0.89986 0.00097000 -0.00072000 1.00000000 -298.87839 66 'helical symmetry operation' ? ? 0.49535000 -0.86869000 -0.00113000 1.69059 0.86869000 0.49535000 -0.00048000 0.92662 0.00098000 -0.00074000 1.00000000 -303.54834 67 'helical symmetry operation' ? ? 0.48122000 -0.87660000 -0.00114000 1.70950 0.87660000 0.48122000 -0.00050000 0.95363 0.00099000 -0.00076000 1.00000000 -308.21832 68 'helical symmetry operation' ? ? 0.46696000 -0.88428000 -0.00115000 1.72811 0.88428000 0.46696000 -0.00051000 0.98074 0.00099000 -0.00078000 1.00000000 -312.88834 69 'helical symmetry operation' ? ? 0.45258000 -0.89172000 -0.00116000 1.74630 0.89172000 0.45259000 -0.00053000 1.00829 0.00100000 -0.00080000 1.00000000 -317.55820 70 'helical symmetry operation' ? ? 0.43809000 -0.89893000 -0.00117000 1.76426 0.89893000 0.43809000 -0.00055000 1.03567 0.00101000 -0.00082000 1.00000000 -322.22821 71 'helical symmetry operation' ? ? 0.42347000 -0.90591000 -0.00119000 1.78184 0.90591000 0.42347000 -0.00056000 1.06390 0.00101000 -0.00084000 1.00000000 -326.89819 72 'helical symmetry operation' ? ? 0.40875000 -0.91265000 -0.00120000 1.79885 0.91265000 0.40875000 -0.00058000 1.09232 0.00102000 -0.00085000 1.00000000 -331.56812 73 'helical symmetry operation' ? ? 0.39392000 -0.91915000 -0.00121000 1.81572 0.91915000 0.39392000 -0.00060000 1.12071 0.00102000 -0.00087000 1.00000000 -336.23810 74 'helical symmetry operation' ? ? 0.37898000 -0.92540000 -0.00122000 1.83208 0.92540000 0.37898000 -0.00062000 1.14982 0.00103000 -0.00089000 1.00000000 -340.90802 75 'helical symmetry operation' ? ? 0.36395000 -0.93142000 -0.00122000 1.84810 0.93142000 0.36395000 -0.00063000 1.17880 0.00103000 -0.00091000 1.00000000 -345.57797 76 'helical symmetry operation' ? ? 0.34882000 -0.93719000 -0.00123000 1.86386 0.93719000 0.34882000 -0.00065000 1.20790 0.00104000 -0.00093000 1.00000000 -350.24802 77 'helical symmetry operation' ? ? 0.33360000 -0.94272000 -0.00124000 1.87910 0.94272000 0.33360000 -0.00067000 1.23794 0.00104000 -0.00095000 1.00000000 -354.91797 78 'helical symmetry operation' ? ? 0.31829000 -0.94799000 -0.00125000 1.89393 0.94799000 0.31829000 -0.00069000 1.26751 0.00105000 -0.00097000 1.00000000 -359.58801 79 'helical symmetry operation' ? ? 0.30290000 -0.95302000 -0.00126000 1.90839 0.95302000 0.30290000 -0.00070000 1.29781 0.00105000 -0.00099000 1.00000000 -364.25787 80 'helical symmetry operation' ? ? 0.28742000 -0.95780000 -0.00127000 1.92261 0.95780000 0.28743000 -0.00072000 1.32784 0.00106000 -0.00101000 1.00000000 -368.92780 81 'helical symmetry operation' ? ? 0.27188000 -0.96233000 -0.00128000 1.93605 0.96233000 0.27188000 -0.00074000 1.35871 0.00106000 -0.00103000 1.00000000 -373.59775 82 'helical symmetry operation' ? ? 0.25626000 -0.96661000 -0.00128000 1.94974 0.96661000 0.25626000 -0.00076000 1.38895 0.00106000 -0.00105000 1.00000000 -378.26770 83 'helical symmetry operation' ? ? 0.24057000 -0.97063000 -0.00129000 1.96240 0.97063000 0.24057000 -0.00078000 1.42005 0.00106000 -0.00107000 1.00000000 -382.93768 84 'helical symmetry operation' ? ? 0.22483000 -0.97440000 -0.00130000 1.97498 0.97440000 0.22483000 -0.00079000 1.45068 0.00107000 -0.00109000 1.00000000 -387.60776 85 'helical symmetry operation' ? ? 0.20902000 -0.97791000 -0.00130000 1.98700 0.97791000 0.20902000 -0.00081000 1.48234 0.00107000 -0.00111000 1.00000000 -392.27765 86 'helical symmetry operation' ? ? 0.19316000 -0.98117000 -0.00131000 1.99873 0.98117000 0.19316000 -0.00083000 1.51363 0.00107000 -0.00113000 1.00000000 -396.94775 87 'helical symmetry operation' ? ? 0.17724000 -0.98417000 -0.00132000 2.01013 0.98417000 0.17724000 -0.00085000 1.54506 0.00107000 -0.00115000 1.00000000 -401.61780 88 'helical symmetry operation' ? ? 0.16128000 -0.98691000 -0.00132000 2.02079 0.98691000 0.16129000 -0.00087000 1.57704 0.00107000 -0.00117000 1.00000000 -406.28741 89 'helical symmetry operation' ? ? 0.14528000 -0.98939000 -0.00133000 2.03129 0.98939000 0.14528000 -0.00089000 1.60893 0.00107000 -0.00119000 1.00000000 -410.95764 90 'helical symmetry operation' ? ? 0.12924000 -0.99161000 -0.00133000 2.04096 0.99161000 0.12924000 -0.00091000 1.64118 0.00107000 -0.00120000 1.00000000 -415.62762 91 'helical symmetry operation' ? ? 0.11317000 -0.99357000 -0.00134000 2.05060 0.99358000 0.11317000 -0.00093000 1.67329 0.00107000 -0.00122000 1.00000000 -420.29730 92 'helical symmetry operation' ? ? 0.09707000 -0.99528000 -0.00134000 2.05968 0.99528000 0.09707000 -0.00095000 1.70589 0.00107000 -0.00124000 1.00000000 -424.96729 93 'helical symmetry operation' ? ? 0.08094000 -0.99672000 -0.00135000 2.06854 0.99672000 0.08094000 -0.00097000 1.73808 0.00107000 -0.00127000 1.00000000 -429.63739 94 'helical symmetry operation' ? ? 0.06479000 -0.99790000 -0.00135000 2.07644 0.99790000 0.06479000 -0.00099000 1.77106 0.00107000 -0.00128000 1.00000000 -434.30731 95 'helical symmetry operation' ? ? 0.04862000 -0.99882000 -0.00135000 2.08426 0.99882000 0.04862000 -0.00100000 1.80364 0.00107000 -0.00130000 1.00000000 -438.97723 96 'helical symmetry operation' ? ? 0.03244000 -0.99947000 -0.00136000 2.09165 0.99947000 0.03244000 -0.00102000 1.83653 0.00107000 -0.00132000 1.00000000 -443.64722 97 'helical symmetry operation' ? ? 0.01625000 -0.99987000 -0.00136000 2.09849 0.99987000 0.01625000 -0.00104000 1.86951 0.00107000 -0.00134000 1.00000000 -448.31714 98 'helical symmetry operation' ? ? 0.00006000 -1.00000000 -0.00136000 2.10475 1.00000000 0.00006000 -0.00106000 1.90278 0.00106000 -0.00136000 1.00000000 -452.98718 99 'helical symmetry operation' ? ? -0.01613000 -0.99987000 -0.00136000 2.11099 0.99987000 -0.01613000 -0.00108000 1.93572 0.00106000 -0.00138000 1.00000000 -457.65717 100 'helical symmetry operation' ? ? -0.03232000 -0.99948000 -0.00137000 2.11667 0.99948000 -0.03232000 -0.00110000 1.96895 0.00106000 -0.00140000 1.00000000 -462.32727 101 'helical symmetry operation' ? ? -0.04850000 -0.99882000 -0.00137000 2.12164 0.99882000 -0.04850000 -0.00112000 2.00234 0.00106000 -0.00142000 1.00000000 -466.99710 102 'helical symmetry operation' ? ? -0.06467000 -0.99791000 -0.00137000 2.12629 0.99791000 -0.06467000 -0.00114000 2.03571 0.00105000 -0.00144000 1.00000000 -471.66724 103 'helical symmetry operation' ? ? -0.08082000 -0.99673000 -0.00137000 2.13062 0.99673000 -0.08082000 -0.00116000 2.06912 0.00105000 -0.00146000 1.00000000 -476.33698 104 'helical symmetry operation' ? ? -0.09695000 -0.99529000 -0.00137000 2.13438 0.99529000 -0.09695000 -0.00118000 2.10266 0.00104000 -0.00148000 1.00000000 -481.00696 105 'helical symmetry operation' ? ? -0.11305000 -0.99359000 -0.00137000 2.13778 0.99359000 -0.11305000 -0.00120000 2.13617 0.00104000 -0.00150000 1.00000000 -485.67694 106 'helical symmetry operation' ? ? -0.12912000 -0.99163000 -0.00137000 2.14078 0.99163000 -0.12912000 -0.00122000 2.16974 0.00103000 -0.00152000 1.00000000 -490.34662 107 'helical symmetry operation' ? ? -0.14516000 -0.98941000 -0.00137000 2.14320 0.98941000 -0.14516000 -0.00124000 2.20347 0.00103000 -0.00154000 1.00000000 -495.01685 108 'helical symmetry operation' ? ? -0.16117000 -0.98693000 -0.00137000 2.14529 0.98693000 -0.16116000 -0.00126000 2.23666 0.00102000 -0.00156000 1.00000000 -499.68683 109 'helical symmetry operation' ? ? -0.17713000 -0.98419000 -0.00137000 2.14660 0.98419000 -0.17712000 -0.00128000 2.27075 0.00102000 -0.00158000 1.00000000 -504.35693 110 'helical symmetry operation' ? ? -0.19304000 -0.98119000 -0.00137000 2.14755 0.98119000 -0.19304000 -0.00130000 2.30440 0.00101000 -0.00159000 1.00000000 -509.02692 111 'helical symmetry operation' ? ? -0.20890000 -0.97794000 -0.00137000 2.14812 0.97794000 -0.20890000 -0.00132000 2.33815 0.00101000 -0.00161000 1.00000000 -513.69678 112 'helical symmetry operation' ? ? -0.22471000 -0.97442000 -0.00137000 2.14827 0.97443000 -0.22471000 -0.00134000 2.37172 0.00100000 -0.00163000 1.00000000 -518.36658 113 'helical symmetry operation' ? ? -0.24046000 -0.97066000 -0.00136000 2.14801 0.97066000 -0.24046000 -0.00136000 2.40542 0.00099000 -0.00165000 1.00000000 -523.03656 114 'helical symmetry operation' ? ? -0.25614000 -0.96664000 -0.00136000 2.14710 0.96664000 -0.25614000 -0.00138000 2.43910 0.00099000 -0.00167000 1.00000000 -527.70660 # _struct_biol.id 1 _struct_biol.details ? # _pdbx_helical_symmetry.entry_id 2M5M _pdbx_helical_symmetry.number_of_operations 114 _pdbx_helical_symmetry.rotation_per_n_subunits -0.93 _pdbx_helical_symmetry.rise_per_n_subunits 4.67 _pdbx_helical_symmetry.n_subunits_divisor 1 _pdbx_helical_symmetry.dyad_axis no _pdbx_helical_symmetry.circular_symmetry 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2M5M _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2M5M _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.contents '15 mg/mL [U-100% 13C; U-100% 15N] TTR(105-115), 10% acetonitrile/H2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '10% acetonitrile/H2O' # _pdbx_nmr_exptl_sample.component 'TTR(105-115)-1' _pdbx_nmr_exptl_sample.concentration 15 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mg/mL _pdbx_nmr_exptl_sample.isotopic_labeling '[U-100% 13C; U-100% 15N]' _pdbx_nmr_exptl_sample.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 2 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '1D DQ-DRAWS' 1 2 1 REDOR 1 3 1 ZF-TEDOR 1 4 1 '2D PDSD' # _pdbx_nmr_refine.entry_id 2M5M _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNSSOLVE ? 1 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNSSOLVE ? 2 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 2M5M _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 2M5M _em_3d_reconstruction.id 1 _em_3d_reconstruction.resolution_method 'FSC 0.5 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.method 'Common crossovers' _em_3d_reconstruction.nominal_pixel_size 1.8 _em_3d_reconstruction.actual_pixel_size 1.8 _em_3d_reconstruction.resolution 12.2 _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details 'The particles were selected using an automatic selection program.' _em_3d_reconstruction.num_particles 152 _em_3d_reconstruction.num_class_averages 28 _em_3d_reconstruction.algorithm ? # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name '10% acetonitrile/water' _em_buffer.pH 2 _em_buffer.details '10% acetonitrile/water' # _em_entity_assembly.id 1 _em_entity_assembly.name 'Triplet cross-beta amyloid fibril polymorph' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 2M5M _em_image_scans.id 1 _em_image_scans.image_recording_id 1 _em_image_scans.number_digital_images 250 _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.details ? # _em_imaging.entry_id 2M5M _em_imaging.id 1 _em_imaging.date 2006-03-03 _em_imaging.specimen_id 1 _em_imaging.temperature 99 _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.nominal_defocus_min 900 _em_imaging.nominal_defocus_max 3000 _em_imaging.tilt_angle_min 0 _em_imaging.tilt_angle_max 0 _em_imaging.nominal_cs ? _em_imaging.mode 'BRIGHT FIELD' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.nominal_magnification 40000 _em_imaging.calibrated_magnification 40000 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.accelerating_voltage 200 _em_imaging.details ? _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'GATAN LIQUID NITROGEN' _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params 0 _em_imaging.astigmatism 'Objective lens astigmatism was corrected at 100,000 times magnification.' _em_imaging.citation_id ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details 'holey carbon films (R2/2, QuantifoilMicro Tools GmbH, Jena, Germany)' _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? # _em_vitrification.entry_id 2M5M _em_vitrification.id 1 _em_vitrification.details 'Fibrils were applied to holey carbon films that were immediately plunge-frozen at liquid nitrogen temperature.' _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 95 _em_vitrification.temp 99 _em_vitrification.instrument 'HOMEMADE PLUNGER' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.specimen_id 1 # _em_experiment.entry_id 2M5M _em_experiment.id 1 _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ILE N N N N 14 ILE CA C N S 15 ILE C C N N 16 ILE O O N N 17 ILE CB C N S 18 ILE CG1 C N N 19 ILE CG2 C N N 20 ILE CD1 C N N 21 ILE OXT O N N 22 ILE H H N N 23 ILE H2 H N N 24 ILE HA H N N 25 ILE HB H N N 26 ILE HG12 H N N 27 ILE HG13 H N N 28 ILE HG21 H N N 29 ILE HG22 H N N 30 ILE HG23 H N N 31 ILE HD11 H N N 32 ILE HD12 H N N 33 ILE HD13 H N N 34 ILE HXT H N N 35 LEU N N N N 36 LEU CA C N S 37 LEU C C N N 38 LEU O O N N 39 LEU CB C N N 40 LEU CG C N N 41 LEU CD1 C N N 42 LEU CD2 C N N 43 LEU OXT O N N 44 LEU H H N N 45 LEU H2 H N N 46 LEU HA H N N 47 LEU HB2 H N N 48 LEU HB3 H N N 49 LEU HG H N N 50 LEU HD11 H N N 51 LEU HD12 H N N 52 LEU HD13 H N N 53 LEU HD21 H N N 54 LEU HD22 H N N 55 LEU HD23 H N N 56 LEU HXT H N N 57 PRO N N N N 58 PRO CA C N S 59 PRO C C N N 60 PRO O O N N 61 PRO CB C N N 62 PRO CG C N N 63 PRO CD C N N 64 PRO OXT O N N 65 PRO H H N N 66 PRO HA H N N 67 PRO HB2 H N N 68 PRO HB3 H N N 69 PRO HG2 H N N 70 PRO HG3 H N N 71 PRO HD2 H N N 72 PRO HD3 H N N 73 PRO HXT H N N 74 SER N N N N 75 SER CA C N S 76 SER C C N N 77 SER O O N N 78 SER CB C N N 79 SER OG O N N 80 SER OXT O N N 81 SER H H N N 82 SER H2 H N N 83 SER HA H N N 84 SER HB2 H N N 85 SER HB3 H N N 86 SER HG H N N 87 SER HXT H N N 88 THR N N N N 89 THR CA C N S 90 THR C C N N 91 THR O O N N 92 THR CB C N R 93 THR OG1 O N N 94 THR CG2 C N N 95 THR OXT O N N 96 THR H H N N 97 THR H2 H N N 98 THR HA H N N 99 THR HB H N N 100 THR HG1 H N N 101 THR HG21 H N N 102 THR HG22 H N N 103 THR HG23 H N N 104 THR HXT H N N 105 TYR N N N N 106 TYR CA C N S 107 TYR C C N N 108 TYR O O N N 109 TYR CB C N N 110 TYR CG C Y N 111 TYR CD1 C Y N 112 TYR CD2 C Y N 113 TYR CE1 C Y N 114 TYR CE2 C Y N 115 TYR CZ C Y N 116 TYR OH O N N 117 TYR OXT O N N 118 TYR H H N N 119 TYR H2 H N N 120 TYR HA H N N 121 TYR HB2 H N N 122 TYR HB3 H N N 123 TYR HD1 H N N 124 TYR HD2 H N N 125 TYR HE1 H N N 126 TYR HE2 H N N 127 TYR HH H N N 128 TYR HXT H N N 129 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ILE N CA sing N N 13 ILE N H sing N N 14 ILE N H2 sing N N 15 ILE CA C sing N N 16 ILE CA CB sing N N 17 ILE CA HA sing N N 18 ILE C O doub N N 19 ILE C OXT sing N N 20 ILE CB CG1 sing N N 21 ILE CB CG2 sing N N 22 ILE CB HB sing N N 23 ILE CG1 CD1 sing N N 24 ILE CG1 HG12 sing N N 25 ILE CG1 HG13 sing N N 26 ILE CG2 HG21 sing N N 27 ILE CG2 HG22 sing N N 28 ILE CG2 HG23 sing N N 29 ILE CD1 HD11 sing N N 30 ILE CD1 HD12 sing N N 31 ILE CD1 HD13 sing N N 32 ILE OXT HXT sing N N 33 LEU N CA sing N N 34 LEU N H sing N N 35 LEU N H2 sing N N 36 LEU CA C sing N N 37 LEU CA CB sing N N 38 LEU CA HA sing N N 39 LEU C O doub N N 40 LEU C OXT sing N N 41 LEU CB CG sing N N 42 LEU CB HB2 sing N N 43 LEU CB HB3 sing N N 44 LEU CG CD1 sing N N 45 LEU CG CD2 sing N N 46 LEU CG HG sing N N 47 LEU CD1 HD11 sing N N 48 LEU CD1 HD12 sing N N 49 LEU CD1 HD13 sing N N 50 LEU CD2 HD21 sing N N 51 LEU CD2 HD22 sing N N 52 LEU CD2 HD23 sing N N 53 LEU OXT HXT sing N N 54 PRO N CA sing N N 55 PRO N CD sing N N 56 PRO N H sing N N 57 PRO CA C sing N N 58 PRO CA CB sing N N 59 PRO CA HA sing N N 60 PRO C O doub N N 61 PRO C OXT sing N N 62 PRO CB CG sing N N 63 PRO CB HB2 sing N N 64 PRO CB HB3 sing N N 65 PRO CG CD sing N N 66 PRO CG HG2 sing N N 67 PRO CG HG3 sing N N 68 PRO CD HD2 sing N N 69 PRO CD HD3 sing N N 70 PRO OXT HXT sing N N 71 SER N CA sing N N 72 SER N H sing N N 73 SER N H2 sing N N 74 SER CA C sing N N 75 SER CA CB sing N N 76 SER CA HA sing N N 77 SER C O doub N N 78 SER C OXT sing N N 79 SER CB OG sing N N 80 SER CB HB2 sing N N 81 SER CB HB3 sing N N 82 SER OG HG sing N N 83 SER OXT HXT sing N N 84 THR N CA sing N N 85 THR N H sing N N 86 THR N H2 sing N N 87 THR CA C sing N N 88 THR CA CB sing N N 89 THR CA HA sing N N 90 THR C O doub N N 91 THR C OXT sing N N 92 THR CB OG1 sing N N 93 THR CB CG2 sing N N 94 THR CB HB sing N N 95 THR OG1 HG1 sing N N 96 THR CG2 HG21 sing N N 97 THR CG2 HG22 sing N N 98 THR CG2 HG23 sing N N 99 THR OXT HXT sing N N 100 TYR N CA sing N N 101 TYR N H sing N N 102 TYR N H2 sing N N 103 TYR CA C sing N N 104 TYR CA CB sing N N 105 TYR CA HA sing N N 106 TYR C O doub N N 107 TYR C OXT sing N N 108 TYR CB CG sing N N 109 TYR CB HB2 sing N N 110 TYR CB HB3 sing N N 111 TYR CG CD1 doub Y N 112 TYR CG CD2 sing Y N 113 TYR CD1 CE1 sing Y N 114 TYR CD1 HD1 sing N N 115 TYR CD2 CE2 doub Y N 116 TYR CD2 HD2 sing N N 117 TYR CE1 CZ doub Y N 118 TYR CE1 HE1 sing N N 119 TYR CE2 CZ sing Y N 120 TYR CE2 HE2 sing N N 121 TYR CZ OH sing N N 122 TYR OH HH sing N N 123 TYR OXT HXT sing N N 124 # _em_ctf_correction.id 1 _em_ctf_correction.details CTFFIND3 _em_ctf_correction.type . # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.avg_electron_dose_per_image . _em_image_recording.details ? _em_image_recording.id 1 _em_image_recording.film_or_detector_model 'KODAK SO-163 FILM' _em_image_recording.imaging_id 1 _em_image_recording.detector_mode ? _em_image_recording.average_exposure_time ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.name _em_software.version _em_software.category _em_software.details _em_software.image_processing_id 1 BKRP ? RECONSTRUCTION ? 1 2 IMAGIC ? RECONSTRUCTION ? 1 3 SPIDER ? RECONSTRUCTION ? 1 # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration 1 _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.details ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 900 Bruker ? 1 Bruker 750 . ? 2 ? 500 . ? 3 ? # _atom_sites.entry_id 2M5M _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_